Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. GTCTGAAATGGAATCACATATCACATGGTTCATGGTCCGCACTTGATTTGGGCATTTCTGTCGTTGATTGAAGTTAGAAGTAGAACTCTGGAGATCCATAACACAATCCCATCAATGGCAATGACAATGACGCACACCCTTTGCCAAGTTGATCAGTGTCGTCACATGCACACAGCTCAGTTGTTGACAGCACAGCAGCGAGCAGCCCAACCAAACGACAGTGCACTTACCTCAACCAACCAAACGACAGCCCAACATGTTAATTTACTCTTTCACACCAGACCCACCTTCATAGCCACCCCATCCTCAAGCGCCTTAATTCAACAAGTGGTGAACCATTAACCTAACTTACGAAACAAACGGTATATGTGATTCGGTAGGTATGGTTACAATTACCACTGCTGGGTGATTCAGCTTCCATTGTTTAGTTTCCTTCAATAAACAAATGGTTCGACTACAATTTTACCCAAAAACTGAGGTAAATCAAACAACCTACAACCCTATGGTTAAGAAACTCAGACCACCCATGCGACAGTATTTGATAACAAAA mRNA sequence GTCTGAAATGGAATCACATATCACATGGTTCATGGTCCGCACTTGATTTGGGCATTTCTGTCGTTGATTGAAGTTAGAAGTAGAACTCTGGAGATCCATAACACAATCCCATCAATGGCAATGACAATGACGCACACCCTTTGCCAAGTTGATCAGTGTCGTCACATGCACACAGCTCAGTTGTTGACAGCACAGCAGCGAGCAGCCCAACCAAACGACAGTGCACTTACCTCAACCAACCAAACGACAGCCCAACATGTTAATTTACTCTTTCACACCAGACCCACCTTCATAGCCACCCCATCCTCAAGCGCCTTAATTCAACAAGTGGTGAACCATTAACCTAACTTACGAAACAAACGGTATATGTGATTCGGTAGGTATGGTTACAATTACCACTGCTGGGTGATTCAGCTTCCATTGTTTAGTTTCCTTCAATAAACAAATGGTTCGACTACAATTTTACCCAAAAACTGAGGTAAATCAAACAACCTACAACCCTATGGTTAAGAAACTCAGACCACCCATGCGACAGTATTTGATAACAAAA Coding sequence (CDS) ATGGTTCATGGTCCGCACTTGATTTGGGCATTTCTGTCGTTGATTGAAGTTAGAAGTAGAACTCTGGAGATCCATAACACAATCCCATCAATGGCAATGACAATGACGCACACCCTTTGCCAAGTTGATCAGTGTCGTCACATGCACACAGCTCAGTTGTTGACAGCACAGCAGCGAGCAGCCCAACCAAACGACAGTGCACTTACCTCAACCAACCAAACGACAGCCCAACATGTTAATTTACTCTTTCACACCAGACCCACCTTCATAGCCACCCCATCCTCAAGCGCCTTAATTCAACAAGTGGTGAACCATTAA Protein sequence MVHGPHLIWAFLSLIEVRSRTLEIHNTIPSMAMTMTHTLCQVDQCRHMHTAQLLTAQQRAAQPNDSALTSTNQTTAQHVNLLFHTRPTFIATPSSSALIQQVVNH*
Homology
BLAST of CSPI01G23590.1 vs. ExPASy TrEMBL
Match: A0A0A0LVG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G527940 PE=4 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 8.5e-46 Identity = 101/105 (96.19%), Postives = 101/105 (96.19%), Query Frame = 0
Query: 1 MVHGPHLIWAFLSLIEVRSRTLEIHNTIPSMAMTMTHTLCQVDQCRHMHTAQLLTAQQRA 60
MVHGPHLIWAFLSLIEV TLEIHNTIPSMAMTMTHTLCQVDQC HMHTAQLLTAQQRA
Sbjct: 1 MVHGPHLIWAFLSLIEV---TLEIHNTIPSMAMTMTHTLCQVDQC-HMHTAQLLTAQQRA 60
Query: 61 AQPNDSALTSTNQTTAQHVNLLFHTRPTFIATPSSSALIQQVVNH 106
AQPNDSALTSTNQTTAQHVNLLFHTRPTFIATPSSSALIQQVVNH
Sbjct: 61 AQPNDSALTSTNQTTAQHVNLLFHTRPTFIATPSSSALIQQVVNH 101
BLAST of CSPI01G23590.1 vs. NCBI nr
Match: KGN65778.1 (hypothetical protein Csa_023276 [Cucumis sativus]) HSP 1 Score: 192.6 bits (488), Expect = 1.7e-45 Identity = 101/105 (96.19%), Postives = 101/105 (96.19%), Query Frame = 0
Query: 1 MVHGPHLIWAFLSLIEVRSRTLEIHNTIPSMAMTMTHTLCQVDQCRHMHTAQLLTAQQRA 60
MVHGPHLIWAFLSLIEV TLEIHNTIPSMAMTMTHTLCQVDQC HMHTAQLLTAQQRA
Sbjct: 1 MVHGPHLIWAFLSLIEV---TLEIHNTIPSMAMTMTHTLCQVDQC-HMHTAQLLTAQQRA 60
Query: 61 AQPNDSALTSTNQTTAQHVNLLFHTRPTFIATPSSSALIQQVVNH 106
AQPNDSALTSTNQTTAQHVNLLFHTRPTFIATPSSSALIQQVVNH
Sbjct: 61 AQPNDSALTSTNQTTAQHVNLLFHTRPTFIATPSSSALIQQVVNH 101
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LVG5 | 8.5e-46 | 96.19 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G527940 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN65778.1 | 1.7e-45 | 96.19 | hypothetical protein Csa_023276 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CSPI01G23590.1.utr5p1 | CSPI01G23590.1.utr5p1 | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CSPI01G23590.1.cds1 | CSPI01G23590.1.cds1 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CSPI01G23590.1.utr3p1 | CSPI01G23590.1.utr3p1 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CSPI01G23590.1 | CSPI01G23590.1-protein | polypeptide |
|
