CSPI01G19340.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI01G19340.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	FRIGIDA-like protein
Location	Chr1: 14788904 .. 14789253 (+)
Sequence length	350
RNA-Seq Expression	CSPI01G19340.1
Synteny	CSPI01G19340.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAATAAAAAAGATCTTCAAAGTGATGAAAATTATGAGGAAGCAAGGGAGAACAACGATCAGATTGGGAGGTTGGAGAGGAGAAAATAAGCAACAGCCAAATATGTGGAAGGTTTTATGGAGGAAATTAAGAAGAGAAAAGAGGAAGATTTTAGAGTCGTCTAATACAACCACGTTTTATTCGTCAGGCCCCAAGTTGATTCCTTATGATCCCTTCTCTTATTCTCAGAATTTCGATCAAGGCACCGCCGGAGAAGAACTTGACAATCTTTCCCGATCCTTCTCCGCCCGCTTTGCTCTAGCCGATGTCGCTTCCGCAACCTTTCTTCACAAACAACATCTTCAATAA

mRNA sequence

CCCAAATAAAAAAGATCTTCAAAGTGATGAAAATTATGAGGAAGCAAGGGAGAACAACGATCAGATTGGGAGGTTGGAGAGGAGAAAATAAGCAACAGCCAAATATGTGGAAGGTTTTATGGAGGAAATTAAGAAGAGAAAAGAGGAAGATTTTAGAGTCGTCTAATACAACCACGTTTTATTCGTCAGGCCCCAAGTTGATTCCTTATGATCCCTTCTCTTATTCTCAGAATTTCGATCAAGGCACCGCCGGAGAAGAACTTGACAATCTTTCCCGATCCTTCTCCGCCCGCTTTGCTCTAGCCGATGTCGCTTCCGCAACCTTTCTTCACAAACAACATCTTCAATAA

Coding sequence (CDS)

ATGAAAATTATGAGGAAGCAAGGGAGAACAACGATCAGATTGGGAGGTTGGAGAGGAGAAAATAAGCAACAGCCAAATATGTGGAAGGTTTTATGGAGGAAATTAAGAAGAGAAAAGAGGAAGATTTTAGAGTCGTCTAATACAACCACGTTTTATTCGTCAGGCCCCAAGTTGATTCCTTATGATCCCTTCTCTTATTCTCAGAATTTCGATCAAGGCACCGCCGGAGAAGAACTTGACAATCTTTCCCGATCCTTCTCCGCCCGCTTTGCTCTAGCCGATGTCGCTTCCGCAACCTTTCTTCACAAACAACATCTTCAATAA

Protein sequence

MKIMRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHLQ*

Homology

[Close]

BLAST of CSPI01G19340.1 vs. ExPASy TrEMBL
Match: A0A0A0LWX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.6e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MKIMRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIP 60
           MKIMRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIP
Sbjct: 1   MKIMRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIP 60

Query: 61  YDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHL 107
           YDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHL
Sbjct: 61  YDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHL 106

[Close]

BLAST of CSPI01G19340.1 vs. ExPASy TrEMBL
Match: A0A4D6LVT9 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG5g177 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.6e-13
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 28  WKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDNLSRSFS 87
           WKVLW KL++EK+K+ ES+      SS P  +PYDP++YS NFD+GTA +E DNLSRSFS
Sbjct: 38  WKVLWMKLKKEKKKLFESA------SSSPLQLPYDPYTYSLNFDRGTAKDEPDNLSRSFS 97

Query: 88  ARFALADVASATFLHKQHL 107
           A+F  AD +S+  L K+ +
Sbjct: 98  AKF--ADPSSSKLLVKKEV 108

[Close]

BLAST of CSPI01G19340.1 vs. ExPASy TrEMBL
Match: I1KIS1 (Uncharacterized protein OS=Glycine max OX=3847 GN=102669499 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 22  KQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDN 81
           K     WKVLW KL++EK+K+ ES       +S P  +PYDP++YSQNFDQGTA +E DN
Sbjct: 31  KSSKMRWKVLWMKLKKEKKKLFES-------ASSPLQVPYDPYTYSQNFDQGTAKDEPDN 90

Query: 82  LSRSFSARFALADVASATFLHKQHL 107
            SRSFS RF  AD +++  L K+ +
Sbjct: 91  FSRSFSVRF--ADPSTSRVLMKKRV 106

[Close]

BLAST of CSPI01G19340.1 vs. ExPASy TrEMBL
Match: A0A151S3I6 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_028966 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.7e-12
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 28 WKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDNLSRSFS 87
          WKVLW KL++EK+K+ ES++        P  +PYDP+SYSQNFDQGTA +E DNLSRSF 
Sbjct: 35 WKVLWMKLKKEKKKLFESAS--------PLQVPYDPYSYSQNFDQGTAKDEPDNLSRSFC 90

Query: 88 ARFA 92
           RFA
Sbjct: 95 VRFA 90

[Close]

BLAST of CSPI01G19340.1 vs. ExPASy TrEMBL
Match: A0A371GGA5 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_28657 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.8e-12
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 28  WKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDNLSRSFS 87
           WK+LW KL++EK+K+ ES++        P  +PYDP++YSQNFDQGTA +E DNLSRSFS
Sbjct: 45  WKMLWMKLKKEKKKLFESAS--------PVQVPYDPYTYSQNFDQGTAKDEPDNLSRSFS 100

Query: 88  ARFA 92
            RFA
Sbjct: 105 VRFA 100

[Close]

BLAST of CSPI01G19340.1 vs. NCBI nr
Match: KAE8653121.1 (hypothetical protein Csa_019717, partial [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MKIMRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIP 60
           MKIMRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIP
Sbjct: 6   MKIMRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIP 65

Query: 61  YDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHL 107
           YDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHL
Sbjct: 66  YDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHL 111

[Close]

BLAST of CSPI01G19340.1 vs. NCBI nr
Match: KAG6587950.1 (hypothetical protein SDJN03_16515, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 68/100 (68.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 5   RKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPF 64
           +K  + TIRLG WR  +  QPN+WKVLWRKLRREKR      N TT YSSG  LIPYDPF
Sbjct: 154 KKSSKQTIRLGRWR--SGYQPNLWKVLWRKLRREKR------NKTTTYSSG-NLIPYDPF 213

Query: 65  SYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQ 105
           SYS NFDQG A EE D L RSFSARFALAD ASA FL  Q
Sbjct: 214 SYSHNFDQGNAAEEPDILCRSFSARFALADAASAFFLDNQ 244

[Close]

BLAST of CSPI01G19340.1 vs. NCBI nr
Match: KAG7021839.1 (hypothetical protein SDJN02_15567, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 65/100 (65.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 5   RKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPF 64
           +K  + TIRLG WR  +  QPN+WK+LWRKLRR+KR      N TT YSSG  LIPYDPF
Sbjct: 154 KKSSKQTIRLGRWR--SGYQPNLWKLLWRKLRRQKR------NKTTTYSSG-NLIPYDPF 213

Query: 65  SYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQ 105
           SYS NFDQG A E+ D L RSFSARFALAD ASA FL  Q
Sbjct: 214 SYSHNFDQGNAAEDPDILCRSFSARFALADAASAFFLDNQ 244

[Close]

BLAST of CSPI01G19340.1 vs. NCBI nr
Match: QCD92116.1 (hypothetical protein DEO72_LG5g177 [Vigna unguiculata])

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 28  WKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDNLSRSFS 87
           WKVLW KL++EK+K+ ES+      SS P  +PYDP++YS NFD+GTA +E DNLSRSFS
Sbjct: 38  WKVLWMKLKKEKKKLFESA------SSSPLQLPYDPYTYSLNFDRGTAKDEPDNLSRSFS 97

Query: 88  ARFALADVASATFLHKQHL 107
           A+F  AD +S+  L K+ +
Sbjct: 98  AKF--ADPSSSKLLVKKEV 108

[Close]

BLAST of CSPI01G19340.1 vs. NCBI nr
Match: KAG5009349.1 (hypothetical protein JHK87_017864 [Glycine soja] >KAG5022044.1 hypothetical protein JHK85_018386 [Glycine max] >KAG5142226.1 hypothetical protein JHK82_017921 [Glycine max])

HSP 1 Score: 82.0 bits (201), Expect = 3.4e-12
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 22  KQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDN 81
           K     WKVLW KL++EK+K+ ES       +S P  +PYDP++YSQNFDQGTA +E DN
Sbjct: 31  KSSKMRWKVLWMKLKKEKKKLFES-------ASSPLQVPYDPYTYSQNFDQGTAKDEPDN 90

Query: 82  LSRSFSARFALADVASATFLHKQHL 107
            SRSFS RF  AD +++  L K+ +
Sbjct: 91  FSRSFSVRF--ADPSTSRVLMKKRV 106

[Close]

BLAST of CSPI01G19340.1 vs. TAIR 10
Match: AT2G25735.1 (unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.5e-05
Identity = 37/95 (38.95%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 9   RTTIRLGGWRGENKQQPN---------MWKVLWRKLRREKRKILESSNTTTFYSSGPKLI 68
           R TI LG +    ++Q            WKVL  KL     K+L S  ++T      K++
Sbjct: 23  RETIVLGRYSKSCREQKQHQRRERLLPKWKVLLMKL-----KLLPSRASST------KVV 82

Query: 69  PYDPFSYSQNFDQGTA---GEELDNLSRSFSARFA 92
            Y+P  YS NFDQG      +E +NLSRSFS RFA
Sbjct: 83  AYEPCDYSLNFDQGPGWHDHDEPENLSRSFSCRFA 106

The following BLAST results are available for this feature:

BLAST of CSPI01G19340.1 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G19340.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWX3	5.6e-53	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1	[more]
A0A4D6LVT9	9.6e-13	54.43	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG5g177 PE=4 SV=1	[more]
I1KIS1	1.6e-12	50.59	Uncharacterized protein OS=Glycine max OX=3847 GN=102669499 PE=4 SV=1	[more]
A0A151S3I6	3.7e-12	60.94	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_028966 PE=4 SV=1	[more]
A0A371GGA5	4.8e-12	59.38	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_28657 P...	[more]

BLAST of CSPI01G19340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653121.1	1.2e-52	100.00	hypothetical protein Csa_019717, partial [Cucumis sativus]	[more]
KAG6587950.1	1.5e-23	68.00	hypothetical protein SDJN03_16515, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7021839.1	1.6e-22	65.00	hypothetical protein SDJN02_15567, partial [Cucurbita argyrosperma subsp. argyro...	[more]
QCD92116.1	2.0e-12	54.43	hypothetical protein DEO72_LG5g177 [Vigna unguiculata]	[more]
KAG5009349.1	3.4e-12	50.59	hypothetical protein JHK87_017864 [Glycine soja] >KAG5022044.1 hypothetical prot...	[more]

BLAST of CSPI01G19340.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25735.1	1.5e-05	38.95	unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 22..105
None	No IPR available	PANTHER	PTHR33168:SF44	EXPRESSED PROTEIN	coord: 22..105

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G19340	CSPI01G19340	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G19340.1.utr5p1	CSPI01G19340.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G19340.1.cds1	CSPI01G19340.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G19340.1	CSPI01G19340.1-protein	polypeptide