CSPI01G00010.2 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI01G00010.2
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	60S acidic ribosomal protein P1-like
Location	Chr1: 3343 .. 4307 (-)
Sequence length	875
RNA-Seq Expression	CSPI01G00010.2
Synteny	CSPI01G00010.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTGGTAGTGGCATGAAAAACCCTAAATCCTAATCCCTCTTCTCTCAGTATATAATCAGATAGAGTAGTGGCGATCGACGGACGCGAATTTTGCCTCCCAATTGTCTCCTTTCAGCTCTGAGATCATTATTGATTGGTTAATTCGCATTTAGCCATGTCTACCAGTGAACTCGCGTGCGCGTACGCCGCCCTGGCTCTTCACGATGATGGAATCGCAATCACTGTACGAACCATTATCTTTCTTTGTTTTTATCTTTTTTTTTTTCATTCTTTGGATTATTTGATGCCTGATTAATTTGCATATTGTGTATAGGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTGGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCCGAGAAGAGGAACATTGGGGACCTTCTTCTTAATGTTGGCTGTGGAGGTGGCGCTGCGGCTTCTGTGGCTGTAGCTGCTCCTACCGCCAGTGCTGCTGCCGCTCCTGCCATCGAGGAAAAGAGGGTATGCGGATGAATCTTTAACCGTTCTTCATTTTGAAAGTCTCCTTTACTTCTCTGTCTGCTAGCTCTAACTTTCCATTTACGCATGATTTTGAACAAGGGTCTTTTTCGTATATATATACTCACATAACACACATCCTAATACTAGCTAGTTACTGCCAAATTAGTTGACTACGAAAAATTGAACTGTTTAACTGTTGCCAATATAGGTTTTTTTTTTTCTTGCAACCAACCGTTAGGTAGTTCATAATATTCCTTTGAACTTTGGAAGTTAAGGATTTCATGTATCCAAGAGATTCAATAAAAAACTGAAAATTGATGAGGGTAATTTGTACTTTTGGAAATTTTAAGTTATTTTCGTTGATTGAGATATTAGTGACTTAGATCTTTATCGTTGCTTTAGTTTCATTCGCCTCGTTGTTCCTTTTTTGTCATTTGTTCATTTA

mRNA sequence

GTTTTTGGTAGTGGCATGAAAAACCCTAAATCCTAATCCCTCTTCTCTCAGTATATAATCAGATAGAGTAGTGGCGATCGACGGACGCGAATTTTGCCTCCCAATTGTCTCCTTTCAGCTCTGAGATCATTATTGATTGGTTAATTCGCATTTAGCCATGTCTACCAGTGAACTCGCGTGCGCGTACGCCGCCCTGGCTCTTCACGATGATGGAATCGCAATCACTGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTGGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCCGAGAAGAGGAACATTGGGGACCTTCTTCTTAATGTTGGCTGTGGAGGTGGCGCTGCGGCTTCTGTGGCTGTAGCTGCTCCTACCGCCAGTGCTGCTGCCGCTCCTGCCATCGAGGAAAAGAGGGTATGCGGATGAATCTTTAACCGTTCTTCATTTTGAAAGTCTCCTTTACTTCTCTGTCTGCTAGCTCTAACTTTCCATTTACGCATGATTTTGAACAAGGGTCTTTTTCGTATATATATACTCACATAACACACATCCTAATACTAGCTAGTTACTGCCAAATTAGTTGACTACGAAAAATTGAACTGTTTAACTGTTGCCAATATAGGTTTTTTTTTTTCTTGCAACCAACCGTTAGGTAGTTCATAATATTCCTTTGAACTTTGGAAGTTAAGGATTTCATGTATCCAAGAGATTCAATAAAAAACTGAAAATTGATGAGGGTAATTTGTACTTTTGGAAATTTTAAGTTATTTTCGTTGATTGAGATATTAGTGACTTAGATCTTTATCGTTGCTTTAGTTTCATTCGCCTCGTTGTTCCTTTTTTGTCATTTGTTCATTTA

Coding sequence (CDS)

ATGTCTACCAGTGAACTCGCGTGCGCGTACGCCGCCCTGGCTCTTCACGATGATGGAATCGCAATCACTGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTCTGTGTGGAATCTTACTGGCCTAGCTTGTTTGCTAAATTGGCCGAGAAGAGGAACATTGGGGACCTTCTTCTTAATGTTGGCTGTGGAGGTGGCGCTGCGGCTTCTGTGGCTGTAGCTGCTCCTACCGCCAGTGCTGCTGCCGCTCCTGCCATCGAGGAAAAGAGGGTATGCGGATGA

Protein sequence

MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAASVAVAAPTASAAAAPAIEEKRVCG*

Homology

[Close]

BLAST of CSPI01G00010.2 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.7e-24
Identity = 65/93 (69.89%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          M++ ELAC YAAL L DDGIAITAEKIA +V AA + VESYWP+LFAKL EKRN+ DL+L
Sbjct: 1  MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61 NVGCGGGAAASVAVAAPT--ASAAAAPAIEEKR 92
          +VG GGG AA VA AAP   A+AAAAPA+EEK+
Sbjct: 61 SVGSGGG-AAPVAAAAPAGGAAAAAAPAVEEKK 92

[Close]

BLAST of CSPI01G00010.2 vs. ExPASy Swiss-Prot
Match: Q8LCW9 (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 7.9e-24
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
          MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61 LNVGCGGGAAASVAVAAPTA--SAAAAPAIEEKR 92
          +NVG GGG  A VA AAP A   AAAAPA EEK+
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKK 94

[Close]

BLAST of CSPI01G00010.2 vs. ExPASy Swiss-Prot
Match: Q8LEQ0 (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 7.9e-24
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 1  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
          MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61 LNVGCGGGAAASVAVAAPTA---SAAAAPAIEEKR 92
          +NVG GGG  A VA AAP A   +AAAAPA EEK+
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKK 95

[Close]

BLAST of CSPI01G00010.2 vs. ExPASy Swiss-Prot
Match: O23095 (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 3.7e-21
Identity = 60/96 (62.50%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
          MST  ELAC+YA + L D+GIAIT++KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61 LNVGC-GGGAAASVAVAAPTA---SAAAAPAIEEKR 92
          +NVG  GGG  A V+ AAP A   +AAAAPA EEK+
Sbjct: 61 MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKK 96

[Close]

BLAST of CSPI01G00010.2 vs. ExPASy Swiss-Prot
Match: P29763 (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-19
Identity = 57/95 (60.00%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELAC YAAL LHDDG+ ITA+ I  +  AAG+ VE YWP+LFAKL  K+++ DL+ 
Sbjct: 1  MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 61 NVGCGGGAAASVAVAAPTA----SAAAAPAIEEKR 92
          NVG GGGAA   A AAP A    +A AAP  EEK+
Sbjct: 61 NVGAGGGAAP--AAAAPAAGGAPAAGAAPKKEEKK 93

[Close]

BLAST of CSPI01G00010.2 vs. ExPASy TrEMBL
Match: A0A0A0LTV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000010 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.6e-38
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGCGGGAAASVAVAAPTASAAAAPAIEEKR 92
          NVGCGGGAAASVAVAAPTASAAAAPAIEEKR
Sbjct: 61 NVGCGGGAAASVAVAAPTASAAAAPAIEEKR 91

[Close]

BLAST of CSPI01G00010.2 vs. ExPASy TrEMBL
Match: A0A5D3BCT6 (60S acidic ribosomal protein P1-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00430 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.4e-37
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGCGGGAAASVAVAAPTASAAAAPAIEEKRV 93
          NVGCGGGAAA VAVAAPTASAAAA AIEEK+V
Sbjct: 61 NVGCGGGAAAPVAVAAPTASAAAASAIEEKKV 92

[Close]

BLAST of CSPI01G00010.2 vs. ExPASy TrEMBL
Match: A0A1S4E0L6 (60S acidic ribosomal protein P1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495745 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.4e-37
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGCGGGAAASVAVAAPTASAAAAPAIEEKRV 93
          NVGCGGGAAA VAVAAPTASAAAA AIEEK+V
Sbjct: 61 NVGCGGGAAAPVAVAAPTASAAAASAIEEKKV 92

[Close]

BLAST of CSPI01G00010.2 vs. ExPASy TrEMBL
Match: A0A1S3C0X1 (60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495745 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.9e-36
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGCGGGAAASVAVAAPTASAAAAPAIEEKR 92
          NVGCGGGAAA VAVAAPTASAAAA AIEEK+
Sbjct: 61 NVGCGGGAAAPVAVAAPTASAAAASAIEEKK 91

[Close]

BLAST of CSPI01G00010.2 vs. ExPASy TrEMBL
Match: A0A5A7TTB2 (60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001460 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.5e-36
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGCGGGAAASVAVAAPTASAAAAPAIEEKR 92
          NVGCGGGAAA VAVAAPTASAA A AIEEK+
Sbjct: 61 NVGCGGGAAAPVAVAAPTASAAVASAIEEKK 91

[Close]

BLAST of CSPI01G00010.2 vs. NCBI nr
Match: XP_004138012.2 (60S acidic ribosomal protein P1 [Cucumis sativus] >KGN63426.1 hypothetical protein Csa_013711 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 5.4e-38
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGCGGGAAASVAVAAPTASAAAAPAIEEKR 92
          NVGCGGGAAASVAVAAPTASAAAAPAIEEKR
Sbjct: 61 NVGCGGGAAASVAVAAPTASAAAAPAIEEKR 91

[Close]

BLAST of CSPI01G00010.2 vs. NCBI nr
Match: XP_016901771.1 (PREDICTED: 60S acidic ribosomal protein P1-like isoform X2 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGCGGGAAASVAVAAPTASAAAAPAIEEKRV 93
          NVGCGGGAAA VAVAAPTASAAAA AIEEK+V
Sbjct: 61 NVGCGGGAAAPVAVAAPTASAAAASAIEEKKV 92

[Close]

BLAST of CSPI01G00010.2 vs. NCBI nr
Match: TYJ96937.1 (60S acidic ribosomal protein P1-1 [Cucumis melo var. makuwa])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGCGGGAAASVAVAAPTASAAAAPAIEEKRV 93
          NVGCGGGAAA VAVAAPTASAAAA AIEEK+V
Sbjct: 61 NVGCGGGAAAPVAVAAPTASAAAASAIEEKKV 92

[Close]

BLAST of CSPI01G00010.2 vs. NCBI nr
Match: XP_008455614.1 (PREDICTED: 60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 3.9e-36
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGCGGGAAASVAVAAPTASAAAAPAIEEKR 92
          NVGCGGGAAA VAVAAPTASAAAA AIEEK+
Sbjct: 61 NVGCGGGAAAPVAVAAPTASAAAASAIEEKK 91

[Close]

BLAST of CSPI01G00010.2 vs. NCBI nr
Match: XP_038905168.1 (60S acidic ribosomal protein P1-like [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 6.6e-36
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60
          MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL
Sbjct: 1  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLL 60

Query: 61 NVGCGGGAAASVAVAAPTASAAAAPAIEEKR 92
          NVGCGGGAAA VAVAAP  SAAAAPA+EEK+
Sbjct: 61 NVGCGGGAAAPVAVAAPAVSAAAAPAVEEKK 91

[Close]

BLAST of CSPI01G00010.2 vs. TAIR 10
Match: AT1G01100.1 (60S acidic ribosomal protein family )

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-25
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
          MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61 LNVGCGGGAAASVAVAAPTA--SAAAAPAIEEKR 92
          +NVG GGG  A VA AAP A   AAAAPA EEK+
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKK 94

[Close]

BLAST of CSPI01G00010.2 vs. TAIR 10
Match: AT1G01100.2 (60S acidic ribosomal protein family )

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-25
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
          MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61 LNVGCGGGAAASVAVAAPTA--SAAAAPAIEEKR 92
          +NVG GGG  A VA AAP A   AAAAPA EEK+
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKK 94

[Close]

BLAST of CSPI01G00010.2 vs. TAIR 10
Match: AT1G01100.4 (60S acidic ribosomal protein family )

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-25
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
          MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61 LNVGCGGGAAASVAVAAPTA--SAAAAPAIEEKR 92
          +NVG GGG  A VA AAP A   AAAAPA EEK+
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKK 94

[Close]

BLAST of CSPI01G00010.2 vs. TAIR 10
Match: AT5G47700.1 (60S acidic ribosomal protein family )

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-25
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 1  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
          MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61 LNVGCGGGAAASVAVAAPTA---SAAAAPAIEEKR 92
          +NVG GGG  A VA AAP A   +AAAAPA EEK+
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKK 95

[Close]

BLAST of CSPI01G00010.2 vs. TAIR 10
Match: AT5G47700.2 (60S acidic ribosomal protein family )

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-25
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 1  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLL 60
          MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL+
Sbjct: 1  MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61 LNVGCGGGAAASVAVAAPTA---SAAAAPAIEEKR 92
          +NVG GGG  A VA AAP A   +AAAAPA EEK+
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKK 95

The following BLAST results are available for this feature:

BLAST of CSPI01G00010.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52855	2.7e-24	69.89	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]
Q8LCW9	7.9e-24	65.96	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 ...	[more]
Q8LEQ0	7.9e-24	65.26	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 ...	[more]
O23095	3.7e-21	62.50	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 ...	[more]
P29763	2.6e-19	60.00	60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1	[more]

BLAST of CSPI01G00010.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTV1	2.6e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000010 PE=3 SV=1	[more]
A0A5D3BCT6	6.4e-37	96.74	60S acidic ribosomal protein P1-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4E0L6	6.4e-37	96.74	60S acidic ribosomal protein P1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C0X1	1.9e-36	96.70	60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7TTB2	5.5e-36	95.60	60S acidic ribosomal protein P1-like isoform X1 OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of CSPI01G00010.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138012.2	5.4e-38	100.00	60S acidic ribosomal protein P1 [Cucumis sativus] >KGN63426.1 hypothetical prote...	[more]
XP_016901771.1	1.3e-36	96.74	PREDICTED: 60S acidic ribosomal protein P1-like isoform X2 [Cucumis melo]	[more]
TYJ96937.1	1.3e-36	96.74	60S acidic ribosomal protein P1-1 [Cucumis melo var. makuwa]	[more]
XP_008455614.1	3.9e-36	96.70	PREDICTED: 60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo]	[more]
XP_038905168.1	6.6e-36	94.51	60S acidic ribosomal protein P1-like [Benincasa hispida]	[more]

BLAST of CSPI01G00010.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01100.1	5.6e-25	65.96	60S acidic ribosomal protein family	[more]
AT1G01100.2	5.6e-25	65.96	60S acidic ribosomal protein family	[more]
AT1G01100.4	5.6e-25	65.96	60S acidic ribosomal protein family	[more]
AT5G47700.1	5.6e-25	65.26	60S acidic ribosomal protein family	[more]
AT5G47700.2	5.6e-25	65.26	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..63 e-value: 4.7E-30 score: 105.2
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 22..90 e-value: 1.3E-12 score: 48.1
None	No IPR available	PANTHER	PTHR45696	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 1..90
None	No IPR available	CDD	cd05831	Ribosomal_P1	coord: 16..61 e-value: 2.69573E-16 score: 65.8059

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G00010	CSPI01G00010	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G00010.2.utr3p1	CSPI01G00010.2.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G00010.2.cds2	CSPI01G00010.2.cds2	CDS
CSPI01G00010.2.cds1	CSPI01G00010.2.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G00010.2.utr5p1	CSPI01G00010.2.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G00010.2	CSPI01G00010.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032147	activation of protein kinase activity
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0030295	protein kinase activator activity
molecular_function	GO:0043021	ribonucleoprotein complex binding
molecular_function	GO:0003735	structural constituent of ribosome