Bhi09M000413 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi09M000413
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Plant protein of unknown function (DUF247)
Location	chr9: 10751597 .. 10751803 (-)
Sequence length	207
RNA-Seq Expression	Bhi09M000413
Synteny	Bhi09M000413

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCATTGATCCTGATTCCTATACTCCACAGGAAGTGGCAATTGGTCCATACCATCACTGGCGCCAAGAGCTGTATGAGATGGAGAGGTACAAGATTGCTGCAGCCAAAAGAGCTCAAAAACAGCTCCAAAGCCTCAAGTTTCACGATCTCGTTGAGAAGTTGACCAAGTACGAGCAAAAGACCCGGGCGTGCTACCACAGATAG

mRNA sequence

ATGGTCATTGATCCTGATTCCTATACTCCACAGGAAGTGGCAATTGGTCCATACCATCACTGGCGCCAAGAGCTGTATGAGATGGAGAGGTACAAGATTGCTGCAGCCAAAAGAGCTCAAAAACAGCTCCAAAGCCTCAAGTTTCACGATCTCGTTGAGAAGTTGACCAAGTACGAGCAAAAGACCCGGGCGTGCTACCACAGATAG

Coding sequence (CDS)

ATGGTCATTGATCCTGATTCCTATACTCCACAGGAAGTGGCAATTGGTCCATACCATCACTGGCGCCAAGAGCTGTATGAGATGGAGAGGTACAAGATTGCTGCAGCCAAAAGAGCTCAAAAACAGCTCCAAAGCCTCAAGTTTCACGATCTCGTTGAGAAGTTGACCAAGTACGAGCAAAAGACCCGGGCGTGCTACCACAGATAG

Protein sequence

MVIDPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTKYEQKTRACYHR

Homology

[Close]

BLAST of Bhi09M000413 vs. TAIR 10
Match: AT3G02645.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-16
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1   MVIDPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTKYEQ 60
           M   PDSYTP  V+IGPYH  + EL+EMERYK+  A++ + Q  S +FHDLVEKL   E 
Sbjct: 53  MCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFRFHDLVEKLQSMEI 112

Query: 61  KTRACYHR 69
           K RACYH+
Sbjct: 113 KIRACYHK 120

[Close]

BLAST of Bhi09M000413 vs. TAIR 10
Match: AT3G50120.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 49.7 bits (117), Expect = 1.1e-06
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 4   DPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQL-QSLKFHDLVEKLTKYEQKT 63
           D  SY PQ V++GPYHH ++ L  M+R+K  A  R  K+  Q +K +  ++ + + E+K 
Sbjct: 116 DNKSYFPQTVSLGPYHHGKKRLRSMDRHKWRAVNRVLKRTNQGIKMY--IDAMRELEEKA 175

Query: 64  RACY 67
           RACY
Sbjct: 176 RACY 177

[Close]

BLAST of Bhi09M000413 vs. TAIR 10
Match: AT3G50170.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 48.5 bits (114), Expect = 2.4e-06
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 4   DPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTKYEQKTR 63
           D  SY PQ V++GPYHH ++ L  MER+K  A  +  K+L+  +       + + E+K R
Sbjct: 126 DKKSYFPQTVSLGPYHHGKKRLRPMERHKWRALNKVLKRLKQ-RIEMYTNAMRELEEKAR 185

Query: 64  ACY 67
           ACY
Sbjct: 186 ACY 187

[Close]

BLAST of Bhi09M000413 vs. TAIR 10
Match: AT3G50170.2 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 48.5 bits (114), Expect = 2.4e-06
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 4   DPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTKYEQKTR 63
           D  SY PQ V++GPYHH ++ L  MER+K  A  +  K+L+  +       + + E+K R
Sbjct: 126 DKKSYFPQTVSLGPYHHGKKRLRPMERHKWRALNKVLKRLKQ-RIEMYTNAMRELEEKAR 185

Query: 64  ACY 67
           ACY
Sbjct: 186 ACY 187

[Close]

BLAST of Bhi09M000413 vs. TAIR 10
Match: AT3G50160.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 46.6 bits (109), Expect = 9.3e-06
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 4   DPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDL---VEKLTKYEQ 63
           D  SY PQ V+IGPYHH  + L  MER+K     RA   + +   HD+   ++ + + E+
Sbjct: 117 DTKSYMPQIVSIGPYHHGHKHLMPMERHK----WRAVNMVMARAKHDIEMYIDAMKELEE 176

Query: 64  KTRACY 67
           K RACY
Sbjct: 177 KARACY 178

[Close]

BLAST of Bhi09M000413 vs. ExPASy Swiss-Prot
Match: P0C897 (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana OX=3702 GN=At3g02645 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-15
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1   MVIDPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTKYEQ 60
           M   PDSYTP  V+IGPYH  + EL+EMERYK+  A++ + Q  S +FHDLVEKL   E 
Sbjct: 53  MCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFRFHDLVEKLQSMEI 112

Query: 61  KTRACYHR 69
           K RACYH+
Sbjct: 113 KIRACYHK 120

[Close]

BLAST of Bhi09M000413 vs. ExPASy TrEMBL
Match: A0A1S3CDL4 (putative UPF0481 protein At3g02645 OS=Cucumis melo OX=3656 GN=LOC103499824 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.3e-30
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1   MVIDPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTKYEQ 60
           MVIDPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTK+EQ
Sbjct: 60  MVIDPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTKHEQ 119

Query: 61  KTRACYHR 69
           KTRACYH+
Sbjct: 120 KTRACYHK 127

[Close]

BLAST of Bhi09M000413 vs. ExPASy TrEMBL
Match: A0A5A7UU59 (Putative UPF0481 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G001980 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.3e-30
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1   MVIDPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTKYEQ 60
           MVIDPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTK+EQ
Sbjct: 60  MVIDPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTKHEQ 119

Query: 61  KTRACYHR 69
           KTRACYH+
Sbjct: 120 KTRACYHK 127

[Close]

BLAST of Bhi09M000413 vs. ExPASy TrEMBL
Match: A0A0A0KA21 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432180 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.6e-29
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1   MVIDPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTKYEQ 60
           MVIDPDSY PQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTK+EQ
Sbjct: 60  MVIDPDSYIPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTKHEQ 119

Query: 61  KTRACYHR 69
           KTRACYH+
Sbjct: 120 KTRACYHK 127

[Close]

BLAST of Bhi09M000413 vs. ExPASy TrEMBL
Match: A0A6J1D655 (putative UPF0481 protein At3g02645 OS=Momordica charantia OX=3673 GN=LOC111017403 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.8e-26
Identity = 59/68 (86.76%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MVIDPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTKYEQ 60
          M IDPDSYTPQEVAIGPYH+WRQELYEMERYKIAAAKRAQKQLQS KFH++VEKLTKYE+
Sbjct: 1  MAIDPDSYTPQEVAIGPYHYWRQELYEMERYKIAAAKRAQKQLQSPKFHNIVEKLTKYER 60

Query: 61 KTRACYHR 69
          K R+CYH+
Sbjct: 61 KIRSCYHK 68

[Close]

BLAST of Bhi09M000413 vs. ExPASy TrEMBL
Match: A0A0A0K8N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432200 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1   MVIDPDSYTPQEVAIGPYHHWRQELYEMERYKIAAAKRAQKQLQSLKFHDLVEKLTKYEQ 60
           M IDPDSYTPQEVAIGPYHHWRQELY MERYKIAAA++AQKQLQSLKFH+LVEKL KYE+
Sbjct: 59  MAIDPDSYTPQEVAIGPYHHWRQELYVMERYKIAAARKAQKQLQSLKFHNLVEKLAKYER 118

Query: 61  KTRACYHR 69
           KTRA YH+
Sbjct: 119 KTRAFYHK 126

The following BLAST results are available for this feature:

BLAST of Bhi09M000413 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02645.1	1.5e-16	57.35	Plant protein of unknown function (DUF247)	[more]
AT3G50120.1	1.1e-06	40.63	Plant protein of unknown function (DUF247)	[more]
AT3G50170.1	2.4e-06	39.68	Plant protein of unknown function (DUF247)	[more]
AT3G50170.2	2.4e-06	39.68	Plant protein of unknown function (DUF247)	[more]
AT3G50160.1	9.3e-06	40.91	Plant protein of unknown function (DUF247)	[more]

BLAST of Bhi09M000413 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C897	2.1e-15	57.35	Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana OX=3702 GN=At3g02645 ...	[more]

BLAST of Bhi09M000413 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CDL4	9.3e-30	97.06	putative UPF0481 protein At3g02645 OS=Cucumis melo OX=3656 GN=LOC103499824 PE=4 ...	[more]
A0A5A7UU59	9.3e-30	97.06	Putative UPF0481 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A0A0KA21	4.6e-29	95.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432180 PE=4 SV=1	[more]
A0A6J1D655	4.8e-26	86.76	putative UPF0481 protein At3g02645 OS=Momordica charantia OX=3673 GN=LOC11101740...	[more]
A0A0A0K8N9	1.8e-25	86.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432200 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 4..67 e-value: 1.9E-17 score: 63.6
IPR004158	Protein of unknown function DUF247, plant	PANTHER	PTHR31549	PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED	coord: 3..68
None	No IPR available	PANTHER	PTHR31549:SF176	UPF0481 PLANT-LIKE PROTEIN	coord: 3..68

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi09G000413	Bhi09G000413	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi09M000413.exon1	Bhi09M000413.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi09M000413	cds.Bhi09M000413	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi09M000413	Bhi09M000413-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane