Bhi01M001406 (mRNA) Wax gourd (B227) v1

Overview


Name	Bhi01M001406
Type	mRNA
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	ATP synthase subunit a
Location	chr1: 40385360 .. 40385818 (+)
Sequence length	459
RNA-Seq Expression	Bhi01M001406
Synteny	Bhi01M001406

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAATTGATTCCAGTGTCGCAGAGAACATTATGTCTCGCGATCTGGAAATATCTGCGGAGATGGATACTGAACCCCTCCGCGGATGGGTGGAGGAGAGAAAGAAGAACCCTAATCTCTTAAAATCCCTCATTAGGGAGTCTGTCGCTTTCTTTCATAACAGAGCCGAGAATAACAGCTGGCATAGTTGTCTCTCGCATGCAAGCAAGGAGATGCTGCTGCTGGATGTCACGGTTCTGGGGCGCCATGATCCTTTTCTCTGGAACAATCGAGGGCACTGCCTTCCTTCCGCTTTCAGAGGTAGGGACTTCATCAATCATCGCTCAGTGAGCTATTTATTGCCGCCCATAGCGCTTCACTTGCACGGCAGCGCCACGCCTGGTAGAGCTATCGCGCGCGGGCGAAGGAGATGCATTTTTTGTACTGGTAGTACTGGACAAGCTCAGAGGGAATAA

mRNA sequence

ATGGCAGAAATTGATTCCAGTGTCGCAGAGAACATTATGTCTCGCGATCTGGAAATATCTGCGGAGATGGATACTGAACCCCTCCGCGGATGGGTGGAGGAGAGAAAGAAGAACCCTAATCTCTTAAAATCCCTCATTAGGGAGTCTGTCGCTTTCTTTCATAACAGAGCCGAGAATAACAGCTGGCATAGTTGTCTCTCGCATGCAAGCAAGGAGATGCTGCTGCTGGATGTCACGGTTCTGGGGCGCCATGATCCTTTTCTCTGGAACAATCGAGGGCACTGCCTTCCTTCCGCTTTCAGAGGTAGGGACTTCATCAATCATCGCTCAGTGAGCTATTTATTGCCGCCCATAGCGCTTCACTTGCACGGCAGCGCCACGCCTGGTAGAGCTATCGCGCGCGGGCGAAGGAGATGCATTTTTTGTACTGGTAGTACTGGACAAGCTCAGAGGGAATAA

Coding sequence (CDS)

ATGGCAGAAATTGATTCCAGTGTCGCAGAGAACATTATGTCTCGCGATCTGGAAATATCTGCGGAGATGGATACTGAACCCCTCCGCGGATGGGTGGAGGAGAGAAAGAAGAACCCTAATCTCTTAAAATCCCTCATTAGGGAGTCTGTCGCTTTCTTTCATAACAGAGCCGAGAATAACAGCTGGCATAGTTGTCTCTCGCATGCAAGCAAGGAGATGCTGCTGCTGGATGTCACGGTTCTGGGGCGCCATGATCCTTTTCTCTGGAACAATCGAGGGCACTGCCTTCCTTCCGCTTTCAGAGGTAGGGACTTCATCAATCATCGCTCAGTGAGCTATTTATTGCCGCCCATAGCGCTTCACTTGCACGGCAGCGCCACGCCTGGTAGAGCTATCGCGCGCGGGCGAAGGAGATGCATTTTTTGTACTGGTAGTACTGGACAAGCTCAGAGGGAATAA

Protein sequence

MAEIDSSVAENIMSRDLEISAEMDTEPLRGWVEERKKNPNLLKSLIRESVAFFHNRAENNSWHSCLSHASKEMLLLDVTVLGRHDPFLWNNRGHCLPSAFRGRDFINHRSVSYLLPPIALHLHGSATPGRAIARGRRRCIFCTGSTGQAQRE

Homology

[Close]

BLAST of Bhi01M001406 vs. NCBI nr
Match: KAB8468460.1 (hypothetical protein FH972_025294 [Carpinus fangiana])

HSP 1 Score: 104.8 bits (260), Expect = 6.9e-19
Identity = 51/58 (87.93%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 67  SHASKEMLLLDVTVLGR-HDPFLWNNRGHCLPSAFRGRDFINHRSVSYLLPPIALHLH 124
           S A KEMLLLDVTV GR HDPFLWNNRGHCLPSAFRGR  INHRSVSYLLPPIAL LH
Sbjct: 91  SLARKEMLLLDVTVPGRHHDPFLWNNRGHCLPSAFRGRGGINHRSVSYLLPPIALRLH 148

[Close]

BLAST of Bhi01M001406 vs. NCBI nr
Match: KAF3961630.1 (hypothetical protein CMV_013772 [Castanea mollissima])

HSP 1 Score: 102.8 bits (255), Expect = 2.6e-18
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 73  MLLLDVTVLGRHDPFLWNNRGHCLPSAFRGRDFINHRSVSYLLPPIALHLH 124
           MLLLDVTVLGRHDP LWNNRGHCLPSAF+GR  INHRSVSYLLPPIAL LH
Sbjct: 1   MLLLDVTVLGRHDPSLWNNRGHCLPSAFKGRGCINHRSVSYLLPPIALRLH 51

[Close]

BLAST of Bhi01M001406 vs. NCBI nr
Match: TXG46224.1 (hypothetical protein EZV62_028255 [Acer yangbiense])

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-18
Identity = 46/51 (90.20%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 73  MLLLDVTVLGRHDPFLWNNRGHCLPSAFRGRDFINHRSVSYLLPPIALHLH 124
           MLLLDVTVLG HDP LWNNRGHCLPSAFRG  FINHRSVSYLLPPIAL LH
Sbjct: 1   MLLLDVTVLGHHDPSLWNNRGHCLPSAFRGGGFINHRSVSYLLPPIALRLH 51

[Close]

BLAST of Bhi01M001406 vs. NCBI nr
Match: KAF3944854.1 (hypothetical protein CMV_028715 [Castanea mollissima])

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-13
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 76  LDVTVLGRHDPFLWNNRGHCLPSAFRGRDFINHRSVSYLLPPIALHLH 124
           ++VTVLG HDP LWNNRGHCLPSAF  R  INH SVSYLLPPIAL LH
Sbjct: 17  IEVTVLGCHDPSLWNNRGHCLPSAFNVRGCINHHSVSYLLPPIALRLH 64

[Close]

BLAST of Bhi01M001406 vs. NCBI nr
Match: PKI36994.1 (hypothetical protein CRG98_042616 [Punica granatum])

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MAEIDSSVAENIMSRDLEISAEMDTEPLRGWVEERKKNPNLLKSLIRE 49
          MA +DSSVAENIMSRDLEISAEMDTE LRGWVEE K+NPNLLKS+IRE
Sbjct: 1  MAPVDSSVAENIMSRDLEISAEMDTETLRGWVEEIKENPNLLKSIIRE 48

[Close]

BLAST of Bhi01M001406 vs. ExPASy TrEMBL
Match: A0A5N6L0Z7 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025294 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.3e-19
Identity = 51/58 (87.93%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 67  SHASKEMLLLDVTVLGR-HDPFLWNNRGHCLPSAFRGRDFINHRSVSYLLPPIALHLH 124
           S A KEMLLLDVTV GR HDPFLWNNRGHCLPSAFRGR  INHRSVSYLLPPIAL LH
Sbjct: 91  SLARKEMLLLDVTVPGRHHDPFLWNNRGHCLPSAFRGRGGINHRSVSYLLPPIALRLH 148

[Close]

BLAST of Bhi01M001406 vs. ExPASy TrEMBL
Match: A0A5C7GN69 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_028255 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.7e-18
Identity = 46/51 (90.20%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 73  MLLLDVTVLGRHDPFLWNNRGHCLPSAFRGRDFINHRSVSYLLPPIALHLH 124
           MLLLDVTVLG HDP LWNNRGHCLPSAFRG  FINHRSVSYLLPPIAL LH
Sbjct: 1   MLLLDVTVLGHHDPSLWNNRGHCLPSAFRGGGFINHRSVSYLLPPIALRLH 51

[Close]

BLAST of Bhi01M001406 vs. ExPASy TrEMBL
Match: A0A5C7GR59 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027800 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.7e-18
Identity = 46/51 (90.20%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 73  MLLLDVTVLGRHDPFLWNNRGHCLPSAFRGRDFINHRSVSYLLPPIALHLH 124
           MLLLDVTVLG HDP LWNNRGHCLPSAFRG  FINHRSVSYLLPPIAL LH
Sbjct: 1   MLLLDVTVLGHHDPSLWNNRGHCLPSAFRGGGFINHRSVSYLLPPIALRLH 51

[Close]

BLAST of Bhi01M001406 vs. ExPASy TrEMBL
Match: A0A2I0HZ50 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_042616 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.9e-13
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MAEIDSSVAENIMSRDLEISAEMDTEPLRGWVEERKKNPNLLKSLIRE 49
          MA +DSSVAENIMSRDLEISAEMDTE LRGWVEE K+NPNLLKS+IRE
Sbjct: 1  MAPVDSSVAENIMSRDLEISAEMDTETLRGWVEEIKENPNLLKSIIRE 48

[Close]

BLAST of Bhi01M001406 vs. ExPASy TrEMBL
Match: A0A2N9J977 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61714 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.9e-13
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MAEIDSSVAENIMSRDLEISAEMDTEPLRGWVEERKKNPNLLKSLIRE 49
           MAEI SSVAENIMSRDLEISAEMDTE LRGWVEE K+NPNLLKSLIRE
Sbjct: 75  MAEIYSSVAENIMSRDLEISAEMDTETLRGWVEEIKENPNLLKSLIRE 122

The following BLAST results are available for this feature:

BLAST of Bhi01M001406 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01M001406 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi01M001406 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB8468460.1	6.9e-19	87.93	hypothetical protein FH972_025294 [Carpinus fangiana]	[more]
KAF3961630.1	2.6e-18	90.20	hypothetical protein CMV_013772 [Castanea mollissima]	[more]
TXG46224.1	3.4e-18	90.20	hypothetical protein EZV62_028255 [Acer yangbiense]	[more]
KAF3944854.1	3.3e-13	79.17	hypothetical protein CMV_028715 [Castanea mollissima]	[more]
PKI36994.1	1.6e-12	87.50	hypothetical protein CRG98_042616 [Punica granatum]	[more]

BLAST of Bhi01M001406 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6L0Z7	3.3e-19	87.93	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025294 PE=4 SV=1	[more]
A0A5C7GN69	1.7e-18	90.20	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_028255 PE=3 SV=1	[more]
A0A5C7GR59	1.7e-18	90.20	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027800 PE=3 SV=1	[more]
A0A2I0HZ50	7.9e-13	87.50	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_042616 PE=4 SV=1	[more]
A0A2N9J977	7.9e-13	91.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61714 PE=4 SV=1	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi01G001406	Bhi01G001406	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M001406.exon1	Bhi01M001406.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi01M001406	cds.Bhi01M001406	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi01M001406	Bhi01M001406-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0048038	quinone binding