Tan0022595 (gene) Snake gourd v1

Overview
NameTan0022595
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG11: 49674812 .. 49675144 (+)
RNA-Seq ExpressionTan0022595
SyntenyTan0022595
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCGTGATGGGGGAAGTGGAGGGGAGATTGGCGAAGTTAGGTGGAGAGAGGCACAAATTGGGGCTATTACTCGTTTGAACCATGTAATTAGTACCTTGACAGATCGGATGGATCGAATTGAAGTAGCTTTAGGAAATCCTCCAGGTAGGGAAGTTAATGACGGAGTTGAAAATGAAGAAGAACATGACAATGTAACCCTTTTAGCCGGGCACAATCCAAGGAGAGGGAAAGGTGTAGGTCGGGGAAAAGGAAGGGGAAGAAGAGCAGGAAGAGAATTGTTACCACCGAGAAGGGTTGAGAGGGAGTACCAATATGAGAGGGAAGAGTGA

mRNA sequence

ATGAGTCGTGATGGGGGAAGTGGAGGGGAGATTGGCGAAGTTAGGTGGAGAGAGGCACAAATTGGGGCTATTACTCGTTTGAACCATGTAATTAGTACCTTGACAGATCGGATGGATCGAATTGAAGTAGCTTTAGGAAATCCTCCAGGTAGGGAAGTTAATGACGGAGTTGAAAATGAAGAAGAACATGACAATGTAACCCTTTTAGCCGGGCACAATCCAAGGAGAGGGAAAGGTGTAGGTCGGGGAAAAGGAAGGGGAAGAAGAGCAGGAAGAGAATTGTTACCACCGAGAAGGGTTGAGAGGGAGTACCAATATGAGAGGGAAGAGTGA

Coding sequence (CDS)

ATGAGTCGTGATGGGGGAAGTGGAGGGGAGATTGGCGAAGTTAGGTGGAGAGAGGCACAAATTGGGGCTATTACTCGTTTGAACCATGTAATTAGTACCTTGACAGATCGGATGGATCGAATTGAAGTAGCTTTAGGAAATCCTCCAGGTAGGGAAGTTAATGACGGAGTTGAAAATGAAGAAGAACATGACAATGTAACCCTTTTAGCCGGGCACAATCCAAGGAGAGGGAAAGGTGTAGGTCGGGGAAAAGGAAGGGGAAGAAGAGCAGGAAGAGAATTGTTACCACCGAGAAGGGTTGAGAGGGAGTACCAATATGAGAGGGAAGAGTGA

Protein sequence

MSRDGGSGGEIGEVRWREAQIGAITRLNHVISTLTDRMDRIEVALGNPPGREVNDGVENEEEHDNVTLLAGHNPRRGKGVGRGKGRGRRAGRELLPPRRVEREYQYEREE
Homology
BLAST of Tan0022595 vs. NCBI nr
Match: XP_023534142.1 (uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160.2 bits (404), Expect = 1.0e-35
Identity = 83/111 (74.77%), Postives = 97/111 (87.39%), Query Frame = 0

Query: 1   MSRDGGSGGEIGEVRWREAQIGAITRLNHVISTLTDRMDRIEVALGNPPGREV--NDGVE 60
           M++DGG+GGEI E RWREAQ+G ITRLN VISTLTDRM+RIE+ALGN  GREV  N+GVE
Sbjct: 1   MNQDGGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIEIALGNLQGREVLLNEGVE 60

Query: 61  NEEEHDNVTLLAGHNPRRGKGVGRGKGRGRRAGRELLPPRRVEREYQYERE 110
           NEE+ DNVTLLAGH+PR G+ VGRG+GR RR GRE+L P+R+EREYQYERE
Sbjct: 61  NEED-DNVTLLAGHSPRGGRDVGRGRGRVRRRGREILAPKRIEREYQYERE 110

BLAST of Tan0022595 vs. NCBI nr
Match: XP_022925325.1 (uncharacterized protein LOC111432615 [Cucurbita moschata])

HSP 1 Score: 125.6 bits (314), Expect = 2.7e-25
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 0

Query: 1   MSRDGGSGGEIGEVRWREAQIGAITRLNHVISTLTDRMDRIEVALGNPPGREV--NDGVE 60
           M++D G+GGEI E RWREAQ+G ITRLN VISTLTDRM+RI++ALGN  GREV  N+GVE
Sbjct: 1   MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLNEGVE 60

Query: 61  NEEEHDNVTLLAGHNPRRGKGVGRGKGRGRRAGRELLPPRRVEREY 105
           NEE+ DNVTLLAGH+PR G+ VGRG+GR RR    L    ++E  +
Sbjct: 61  NEED-DNVTLLAGHSPRGGRDVGRGRGRVRRREEYLQYESKIEHVF 105

BLAST of Tan0022595 vs. NCBI nr
Match: XP_022929948.1 (uncharacterized protein LOC111436410 [Cucurbita moschata])

HSP 1 Score: 111.7 bits (278), Expect = 4.1e-21
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 0

Query: 1  MSRDGGSGGEIGEVRWREAQIGAITRLNHVISTLTDRMDRIEVALGNPPGREV--NDGVE 60
          M++DGG+G EI E RWREAQ+G IT LN VISTLTDRM+RIE+ALGN  GREV  N+GVE
Sbjct: 1  MNQDGGNGREINEARWREAQVGTITCLNQVISTLTDRMERIEIALGNLQGREVLLNEGVE 60

Query: 61 NEEEHDNVTLLAGHNPRRGK 79
          NEE+ DNVTLLAGH+PR G+
Sbjct: 61 NEED-DNVTLLAGHSPRGGR 79

BLAST of Tan0022595 vs. NCBI nr
Match: KAE8646857.1 (hypothetical protein Csa_020829, partial [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 3.8e-19
Identity = 64/111 (57.66%), Postives = 79/111 (71.17%), Query Frame = 0

Query: 1   MSRDGGSGGEIGEVRWREAQIGAITRLNHVISTLTDRMDRIEVALGN-PPGREVNDGVEN 60
           M++   + GEI E R  EAQ GAI RL  VI+ LTDR+DRIEVAL N   G+ +N+GVEN
Sbjct: 1   MNQKTKNSGEISEARRIEAQGGAIVRLTQVINDLTDRLDRIEVALRNRHQGQVLNEGVEN 60

Query: 61  EEEHDNVTLLAGHNPRRGKGVGRGKGRGRRAGRELLPPRRVEREYQYEREE 111
           EE+ DN TLLA  N R  + +G+G+ R RR GR++LP RRVEREYQ ER E
Sbjct: 61  EEDEDNETLLAIQNLRGRRVLGQGRRRERREGRDMLPERRVEREYQNERRE 111

BLAST of Tan0022595 vs. NCBI nr
Match: XP_023542108.1 (glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-17
Identity = 54/77 (70.13%), Postives = 65/77 (84.42%), Query Frame = 0

Query: 36  DRMDRIEVALGNPPGREV--NDGVENEEEHDNVTLLAGHNPRRGKGVGRGKGRGRRAGRE 95
           DRM+RIE+ALGN  GREV  N+GVENEE+ DNVTLLAGH+PR G+ VGRG+GR RR GRE
Sbjct: 130 DRMERIEIALGNLQGREVLLNEGVENEED-DNVTLLAGHSPRGGRDVGRGRGRVRRRGRE 189

Query: 96  LLPPRRVEREYQYEREE 111
           +L  +R+EREY YERE+
Sbjct: 190 ILAQKRIEREYPYEREK 205

BLAST of Tan0022595 vs. ExPASy TrEMBL
Match: A0A6J1EHL9 (uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC111432615 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-25
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 0

Query: 1   MSRDGGSGGEIGEVRWREAQIGAITRLNHVISTLTDRMDRIEVALGNPPGREV--NDGVE 60
           M++D G+GGEI E RWREAQ+G ITRLN VISTLTDRM+RI++ALGN  GREV  N+GVE
Sbjct: 1   MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLNEGVE 60

Query: 61  NEEEHDNVTLLAGHNPRRGKGVGRGKGRGRRAGRELLPPRRVEREY 105
           NEE+ DNVTLLAGH+PR G+ VGRG+GR RR    L    ++E  +
Sbjct: 61  NEED-DNVTLLAGHSPRGGRDVGRGRGRVRRREEYLQYESKIEHVF 105

BLAST of Tan0022595 vs. ExPASy TrEMBL
Match: A0A6J1ETN1 (uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC111436410 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 0

Query: 1  MSRDGGSGGEIGEVRWREAQIGAITRLNHVISTLTDRMDRIEVALGNPPGREV--NDGVE 60
          M++DGG+G EI E RWREAQ+G IT LN VISTLTDRM+RIE+ALGN  GREV  N+GVE
Sbjct: 1  MNQDGGNGREINEARWREAQVGTITCLNQVISTLTDRMERIEIALGNLQGREVLLNEGVE 60

Query: 61 NEEEHDNVTLLAGHNPRRGK 79
          NEE+ DNVTLLAGH+PR G+
Sbjct: 61 NEED-DNVTLLAGHSPRGGR 79

BLAST of Tan0022595 vs. ExPASy TrEMBL
Match: A0A0A0KC00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.3e-16
Identity = 57/111 (51.35%), Postives = 76/111 (68.47%), Query Frame = 0

Query: 1   MSRDGGSGGEIGEVRWREAQIGAITRLNHVISTLTDRMDRIEVALGN-PPGREVNDGVEN 60
           M++   + G+I E +  EAQ GAI RL  VI+ LT+R+DR+EVAL N   G  +N+GVEN
Sbjct: 1   MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVEN 60

Query: 61  EEEHDNVTLLAGHNPRRGKGVGRGKGRGRRAGRELLPPRRVEREYQYEREE 111
           EE+ DN T LAG NPR  + +G+G+ R RR  R +LP RRVE E+Q ER +
Sbjct: 61  EEDEDNETFLAGQNPRGRRVLGQGRRRERRDVRGMLPERRVEVEHQNERRD 111

BLAST of Tan0022595 vs. ExPASy TrEMBL
Match: A0A0A0L0S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-09
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 0

Query: 1  MSRDGGSGGEIGEVRWREAQIGAITRLNHVISTLTDRMDRIEVALGN-PPGREVNDGVEN 60
          M++   + GEI E R  EAQ GAI RL  VI+ LTDR+DR+ VAL N   G  +N+GVEN
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60

Query: 61 EEEHDNVTLLAGHNP 75
          E++ DN TLLA  NP
Sbjct: 61 EKDEDNETLLARQNP 75

BLAST of Tan0022595 vs. ExPASy TrEMBL
Match: A0A5A7UDQ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27G00150 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.2e-06
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 41  IEVALGN-PPGREVNDGVENEEEHDNVTLLAGHNPRRGKGVGRGKGRGRRAGRELLPPRR 100
           ++VAL N   G  +N+GVEN+E+ DN T+L G NP+  + +G+ + R RR G  +LP RR
Sbjct: 1   MKVALRNHHQGEVLNEGVENKEDEDNETILVGQNPKGRRVLGQDRRRERREGMGMLPERR 60

Query: 101 VEREYQYEREE 111
           VEREY+ ER E
Sbjct: 61  VEREYENERRE 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023534142.11.0e-3574.77uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo][more]
XP_022925325.12.7e-2564.15uncharacterized protein LOC111432615 [Cucurbita moschata][more]
XP_022929948.14.1e-2172.50uncharacterized protein LOC111436410 [Cucurbita moschata][more]
KAE8646857.13.8e-1957.66hypothetical protein Csa_020829, partial [Cucumis sativus][more]
XP_023542108.13.6e-1770.13glutamic acid-rich protein-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A6J1EHL91.3e-2564.15uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC1114326... [more]
A0A6J1ETN12.0e-2172.50uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC1114364... [more]
A0A0A0KC003.3e-1651.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1[more]
A0A0A0L0S31.0e-0954.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1[more]
A0A5A7UDQ95.2e-0649.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0022595.1Tan0022595.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding