Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTATAATAGAATATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAGCGAGATAGATCGATGCAAGAGGTTCGAGGATGGTTTACGAGCAGAGATCCGAACACCTGTGACAGCAAGTTTTGAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGGCATTACGAGTAGAGCGAAGCCTAGTAGATGACAGAATGGGAAAAGGAGCTGTAGGTGGTGGTCATACCACTTATTCTGTTGGTTTACCACGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTATCTCTGGAAAAGGAAGCTTTAAACCCCTTCGTGGTGGGCAAACTACTCCAAGGACTGGTACAGGTGGACGTGGGGAAAGACAGAGGCAGCAGGGATCAAGTTTTCTGATAGGATCAGCAAGGGATTCCCGTACAGGGCAACCCAGTGAGTCAGTAGCTAGTTCAGCAAGGAAACCTTTGTGCAACACTTGTGGAAGTATCATTGGGGTCGATGTTTGA
mRNA sequence
ATGACTATAATAGAATATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAGCGAGATAGATCGATGCAAGAGGTTCGAGGATGGTTTACGAGCAGAGATCCGAACACCTGTGACAGCAAGTTTTGAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGGCATTACGAGTAGAGCGAAGCCTAGTAGATGACAGAATGGGAAAAGGAGCTGTAGGTGGTGGTCATACCACTTATTCTGTTGGTTTACCACGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTATCTCTGGAAAAGGAAGCTTTAAACCCCTTCGTGGTGGGCAAACTACTCCAAGGACTGGTACAGGTGGACGTGGGGAAAGACAGAGGCAGCAGGGATCAAGTTTTCTGATAGGATCAGCAAGGGATTCCCGTACAGGGCAACCCAGTGAGTCAGTAGCTAGTTCAGCAAGGAAACCTTTGTGCAACACTTGTGGAAGTATCATTGGGGTCGATGTTTGA
Coding sequence (CDS)
ATGACTATAATAGAATATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAGCGAGATAGATCGATGCAAGAGGTTCGAGGATGGTTTACGAGCAGAGATCCGAACACCTGTGACAGCAAGTTTTGAGTGGGCTGAGTTCTCCAAGCTTGTGGAGACGGCATTACGAGTAGAGCGAAGCCTAGTAGATGACAGAATGGGAAAAGGAGCTGTAGGTGGTGGTCATACCACTTATTCTGTTGGTTTACCACGAGACCGATTCCAACGAGGAGATAATAGGAGATTCACTCCAGGTATCTCTGGAAAAGGAAGCTTTAAACCCCTTCGTGGTGGGCAAACTACTCCAAGGACTGGTACAGGTGGACGTGGGGAAAGACAGAGGCAGCAGGGATCAAGTTTTCTGATAGGATCAGCAAGGGATTCCCGTACAGGGCAACCCAGTGAGTCAGTAGCTAGTTCAGCAAGGAAACCTTTGTGCAACACTTGTGGAAGTATCATTGGGGTCGATGTTTGA
Protein sequence
MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASFEWAEFSKLVETALRVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPLRGGQTTPRTGTGGRGERQRQQGSSFLIGSARDSRTGQPSESVASSARKPLCNTCGSIIGVDV
Homology
BLAST of Tan0019286 vs. NCBI nr
Match:
KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 133.7 bits (335), Expect = 1.6e-27
Identity = 75/168 (44.64%), Postives = 105/168 (62.50%), Query Frame = 0
Query: 1 MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASFEWAEFSKLVETAL 60
MTI EYEKK+TELS YA+ ++ E++RCKRFE+GLR EIRTPVTA +W +FSKLVE AL
Sbjct: 162 MTIAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAAL 221
Query: 61 RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPLRGGQTTP 120
RVE+SL ++R + T+S + R+R + + RF PG+S +G+FK G +
Sbjct: 222 RVEKSL-NERKQERETSKNVCTFSSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNGSSFS 281
Query: 121 RTGTGGRGERQRQQGSSFLIGSARDSRTGQPSESVASSARKPLCNTCG 169
++G+ G QR GSS I S S + V+ S++ +C CG
Sbjct: 282 KSGSSGGA--QRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCG 326
BLAST of Tan0019286 vs. NCBI nr
Match:
KAA0035138.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 129.4 bits (324), Expect = 3.0e-26
Identity = 81/170 (47.65%), Postives = 106/170 (62.35%), Query Frame = 0
Query: 1 MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASFEWAEFSKLVETAL 60
+++ EYEKK+TELS+YA IVASE DRC+RFE GLR EIRTPVTA +W FS+LVETAL
Sbjct: 208 LSVAEYEKKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 267
Query: 61 RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPG--ISGKGSFKPLRGGQT 120
RVE+S+ +++ G TT + F+ + RRFTPG IS + FK GGQ
Sbjct: 268 RVEQSITEEKSAVELSRGTSTT-------NGFRGREQRRFTPGINISSRQDFKNRSGGQA 327
Query: 121 TPRTGTGGRGERQRQQGSSFLIGSARDSRTGQPSESVASSARKPLCNTCG 169
+ G +RQ Q+ S I S S+ GQ ES+AS+ R+ C +CG
Sbjct: 328 SRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQ--ESIASTVRRTPCTSCG 368
BLAST of Tan0019286 vs. NCBI nr
Match:
TYK15233.1 (uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa])
HSP 1 Score: 127.5 bits (319), Expect = 1.1e-25
Identity = 73/168 (43.45%), Postives = 101/168 (60.12%), Query Frame = 0
Query: 1 MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASFEWAEFSKLVETAL 60
MT+ EYEKK+TELSKYA+ ++ E++R KRFE+GLR EIRT VTA +W +FSKLVE AL
Sbjct: 292 MTVAEYEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRTSVTACADWNDFSKLVEAAL 351
Query: 61 RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPLRGGQTTP 120
RV +SL ++R + T+S + R+R + + RF PG+ +G+FK G
Sbjct: 352 RVGKSL-NERKRERETSKNVRTFSSSMHRNRLGKERSGRFVPGVPSRGNFKSQYNGSYFS 411
Query: 121 RTGTGGRGERQRQQGSSFLIGSARDSRTGQPSESVASSARKPLCNTCG 169
+G+G GE QR GSS I S S + V+ S + +C CG
Sbjct: 412 NSGSG--GEAQRSSGSSHPISSIGGSHIARSDRVVSESCKSSVCYNCG 456
BLAST of Tan0019286 vs. NCBI nr
Match:
KAA0039476.1 (uncharacterized protein E6C27_scaffold64G002900 [Cucumis melo var. makuwa])
HSP 1 Score: 127.5 bits (319), Expect = 1.1e-25
Identity = 73/168 (43.45%), Postives = 101/168 (60.12%), Query Frame = 0
Query: 1 MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASFEWAEFSKLVETAL 60
MT+ EYEKK+TELSKYA+ ++ E++R KRFE+GLR EIRT VTA +W +FSKLVE AL
Sbjct: 256 MTVAEYEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRTSVTACADWNDFSKLVEAAL 315
Query: 61 RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPLRGGQTTP 120
RV +SL ++R + T+S + R+R + + RF PG+ +G+FK G
Sbjct: 316 RVGKSL-NERKRERETSKNVRTFSSSMHRNRLGKERSGRFVPGVPSRGNFKSQYNGSYFS 375
Query: 121 RTGTGGRGERQRQQGSSFLIGSARDSRTGQPSESVASSARKPLCNTCG 169
+G+G GE QR GSS I S S + V+ S + +C CG
Sbjct: 376 NSGSG--GEAQRSSGSSHPISSIGGSHIARSDRVVSESCKSSVCYNCG 420
BLAST of Tan0019286 vs. NCBI nr
Match:
KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 126.7 bits (317), Expect = 1.9e-25
Identity = 73/167 (43.71%), Postives = 102/167 (61.08%), Query Frame = 0
Query: 1 MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASFEWAEFSKLVETAL 60
MT+ EYEKK+TELSKYA+ ++ E +RCKRFE+GLR EIRTPVTA +W +FSKLVE AL
Sbjct: 140 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 199
Query: 61 RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPLRGGQTTP 120
RVE+SL ++R + T+S + R+R + + RF P +S +GSFK G +
Sbjct: 200 RVEKSL-NERKREREASKNLRTFSSSMHRNRPGKERSGRFVPRVSSRGSFKSQYSGSSFS 259
Query: 121 RTGTGGRGERQRQQGSSFLIGSARDSRTGQPSESVASSARKPLCNTC 168
++ +GG QR SS I S S + + V+ S + +C C
Sbjct: 260 KSRSGGGA--QRSSDSSHTISSTGGSHVARSNRVVSESGKSSVCYNC 303
BLAST of Tan0019286 vs. ExPASy TrEMBL
Match:
A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)
HSP 1 Score: 133.7 bits (335), Expect = 7.7e-28
Identity = 75/168 (44.64%), Postives = 105/168 (62.50%), Query Frame = 0
Query: 1 MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASFEWAEFSKLVETAL 60
MTI EYEKK+TELS YA+ ++ E++RCKRFE+GLR EIRTPVTA +W +FSKLVE AL
Sbjct: 162 MTIAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAAL 221
Query: 61 RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPLRGGQTTP 120
RVE+SL ++R + T+S + R+R + + RF PG+S +G+FK G +
Sbjct: 222 RVEKSL-NERKQERETSKNVCTFSSSMHRNRQGKERSGRFVPGVSSRGNFKSQYNGSSFS 281
Query: 121 RTGTGGRGERQRQQGSSFLIGSARDSRTGQPSESVASSARKPLCNTCG 169
++G+ G QR GSS I S S + V+ S++ +C CG
Sbjct: 282 KSGSSGGA--QRSSGSSHPISSTGGSHIARSDRVVSESSKSSVCYNCG 326
BLAST of Tan0019286 vs. ExPASy TrEMBL
Match:
A0A5A7SX06 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002230 PE=4 SV=1)
HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 81/170 (47.65%), Postives = 106/170 (62.35%), Query Frame = 0
Query: 1 MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASFEWAEFSKLVETAL 60
+++ EYEKK+TELS+YA IVASE DRC+RFE GLR EIRTPVTA +W FS+LVETAL
Sbjct: 208 LSVAEYEKKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 267
Query: 61 RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPG--ISGKGSFKPLRGGQT 120
RVE+S+ +++ G TT + F+ + RRFTPG IS + FK GGQ
Sbjct: 268 RVEQSITEEKSAVELSRGTSTT-------NGFRGREQRRFTPGINISSRQDFKNRSGGQA 327
Query: 121 TPRTGTGGRGERQRQQGSSFLIGSARDSRTGQPSESVASSARKPLCNTCG 169
+ G +RQ Q+ S I S S+ GQ ES+AS+ R+ C +CG
Sbjct: 328 SRNVSYGSVFQRQSQRIPSQPIRSTVRSQPGQ--ESIASTVRRTPCTSCG 368
BLAST of Tan0019286 vs. ExPASy TrEMBL
Match:
A0A5A7TBS0 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G002900 PE=4 SV=1)
HSP 1 Score: 127.5 bits (319), Expect = 5.5e-26
Identity = 73/168 (43.45%), Postives = 101/168 (60.12%), Query Frame = 0
Query: 1 MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASFEWAEFSKLVETAL 60
MT+ EYEKK+TELSKYA+ ++ E++R KRFE+GLR EIRT VTA +W +FSKLVE AL
Sbjct: 256 MTVAEYEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRTSVTACADWNDFSKLVEAAL 315
Query: 61 RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPLRGGQTTP 120
RV +SL ++R + T+S + R+R + + RF PG+ +G+FK G
Sbjct: 316 RVGKSL-NERKRERETSKNVRTFSSSMHRNRLGKERSGRFVPGVPSRGNFKSQYNGSYFS 375
Query: 121 RTGTGGRGERQRQQGSSFLIGSARDSRTGQPSESVASSARKPLCNTCG 169
+G+G GE QR GSS I S S + V+ S + +C CG
Sbjct: 376 NSGSG--GEAQRSSGSSHPISSIGGSHIARSDRVVSESCKSSVCYNCG 420
BLAST of Tan0019286 vs. ExPASy TrEMBL
Match:
A0A5D3CTK6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00030 PE=4 SV=1)
HSP 1 Score: 127.5 bits (319), Expect = 5.5e-26
Identity = 73/168 (43.45%), Postives = 101/168 (60.12%), Query Frame = 0
Query: 1 MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASFEWAEFSKLVETAL 60
MT+ EYEKK+TELSKYA+ ++ E++R KRFE+GLR EIRT VTA +W +FSKLVE AL
Sbjct: 292 MTVAEYEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRTSVTACADWNDFSKLVEAAL 351
Query: 61 RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRGDNRRFTPGISGKGSFKPLRGGQTTP 120
RV +SL ++R + T+S + R+R + + RF PG+ +G+FK G
Sbjct: 352 RVGKSL-NERKRERETSKNVRTFSSSMHRNRLGKERSGRFVPGVPSRGNFKSQYNGSYFS 411
Query: 121 RTGTGGRGERQRQQGSSFLIGSARDSRTGQPSESVASSARKPLCNTCG 169
+G+G GE QR GSS I S S + V+ S + +C CG
Sbjct: 412 NSGSG--GEAQRSSGSSHPISSIGGSHIARSDRVVSESCKSSVCYNCG 456
BLAST of Tan0019286 vs. ExPASy TrEMBL
Match:
A0A5D3BTP3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00020 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 9.4e-26
Identity = 80/171 (46.78%), Postives = 108/171 (63.16%), Query Frame = 0
Query: 1 MTIIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASFEWAEFSKLVETAL 60
+++ +YE+K+TELS+YA IVASE DRC RFE GLR EIRTPVTA +W FS+LVETAL
Sbjct: 382 LSVAKYERKYTELSRYAEMIVASESDRCHRFERGLRFEIRTPVTAIAKWMNFSQLVETAL 441
Query: 61 RVERSLVDDRMGKGAVGGGHTTYSVGLPRDRFQRG-DNRRFTPG--ISGKGSFKPLRGGQ 120
RV++S+V+++ G TT + RG + RRFTPG +SG FK GG+
Sbjct: 442 RVKQSIVEEKSAMELSRGVSTTSGI--------RGREQRRFTPGVNVSGCQDFKRRSGGK 501
Query: 121 TTPRTGTGGRGERQRQQGSSFLIGSARDSRTGQPSESVASSARKPLCNTCG 169
+ +G +RQ ++ SS S SRTGQ ESVAS +++ C +CG
Sbjct: 502 PLRQMSSGSAYQRQSRRASSQPANSVARSRTGQ--ESVASESKRTPCVSCG 542
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0060484.1 | 1.6e-27 | 44.64 | Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag... | [more] |
| KAA0035138.1 | 3.0e-26 | 47.65 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
| TYK15233.1 | 1.1e-25 | 43.45 | uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa] | [more] |
| KAA0039476.1 | 1.1e-25 | 43.45 | uncharacterized protein E6C27_scaffold64G002900 [Cucumis melo var. makuwa] | [more] |
| KAA0036813.1 | 1.9e-25 | 43.71 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UZM6 | 7.7e-28 | 44.64 | Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... | [more] |
| A0A5A7SX06 | 1.5e-26 | 47.65 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
| A0A5A7TBS0 | 5.5e-26 | 43.45 | CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
| A0A5D3CTK6 | 5.5e-26 | 43.45 | CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
| A0A5D3BTP3 | 9.4e-26 | 46.78 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
