Tan0017742 (gene) Snake gourd v1

Overview


Name	Tan0017742
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	heat shock factor-binding protein 1
Location	LG06: 6854742 .. 6855962 (+)
RNA-Seq Expression	Tan0017742
Synteny	Tan0017742

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGACAATAGTTGAATCTGATTGTTAAATGTAATTGTCACAACTGAAAATGGTTGATGCTTGATCTTAATTCCTTTTCAAGATTGTCTCCCACTCTCGCTCCGGCTTCTTATTTGTTTGAGTTATTATTGTTGATATTATTTGACCGGTTTGTTGTTGTACCATTGTGTGACAGTGTGAAATGCACATTTTACTCTTTTTATCTTGCAGGATGGACATGACTCTGAAGATGCAAAGCAAAGCACGGCTGATATGACCGTTTTTGTGAGTTCATTTTCTTTTCTTTCAGTTTATTCTTTGTTTTTCCCCATTTGATAGTCAAGCCTAACTTATTTGAAAGATTGGTTATATGAAGTTTATCATTTTTCTGTTGATGAATACTCTCACTCTGTCTAACATTCGATCCTTAAGGCACTCTTGATTGTTTCTTAGTGGTTTATTGTTAAATTGGTAATGACTCTTCTTCTTTTTTCCAGGTGCAAAATCTTCTTCAGCAGATGGTGAGTTTCAGTTGGTGTAAGTTTCCGGCAGAGATATTTATATCTAACATTTTTTTTTACATGCAGCAATCTAGGTTCCAAACCATGTCTGACTCCATTATCACAAAGAATATCCTTCGAATTAATTTTATTTATTGTTAGAAATTTCACTTAAGTTGTAATTATGATGAGTAATTGTTTCTGATAGGTTTGTAAACATTTTGAGTTGCCAAATAAATCCTATAATTATTTATTTGGTAAAATAGGCTAGATAGTGCAATTTCCTGAGTATTATCGTTCTCTTTCATTCTAGTTAACAATGATCTAGTAATAGTATGTGTAGTTAAAACGTTCTTATAGGGAAATGATAGTAATGATTTTGAAATGGATTGAATTTATATCAACCTTAATTCCTTCTAATGGGATGTTTGAATCCAGTACATCTGAGAACCTCTATGCCACCTTGGTGGTAGATTAGAATTTGTTTGACTTTCTAATTCAGCTTTGGGGATTCAGATTAATTGGAAAAGTAGATTGCAGGATAGCTTTATTGTAATAATTGATAATAAATATGCTTTCTTTAACTTGAAAATACTCGACGAGATGGGAAGCCGCATAAATGAATTGGAGCAGAGTATCAACGACCTAAAAGCTGAGATGGGTGTCGAGGGCTCACCATCGCCGCTGCCTCCTTCCAAGGCAAATGCAGATGAATCAAAGAAAGATGAAGGTTCTGCCTAG

mRNA sequence

GTTTGACAATAGTTGAATCTGATTGTTAAATGTAATTGTCACAACTGAAAATGGTTGATGCTTGATCTTAATTCCTTTTCAAGATTGTCTCCCACTCTCGCTCCGGCTTCTTATTTGTTTGAGTTATTATTGTTGATATTATTTGACCGGTTTGTTGTTGTACCATTGTGTGACAGTGTGAAATGCACATTTTACTCTTTTTATCTTGCAGGATGGACATGACTCTGAAGATGCAAAGCAAAGCACGGCTGATATGACCGTTTTTGTGCAAAATCTTCTTCAGCAGATGCAATCTAGGTTCCAAACCATGTCTGACTCCATTATCACAAAGAATATCCTTCGAATTAATTTTATTTATTCTTTGGGGATTCAGATTAATTGGAAAAGTAGATTGCAGGATAGCTTTATTGTAATAATTGATAATAAATATGCTTTCTTTAACTTGAAAATACTCGACGAGATGGGAAGCCGCATAAATGAATTGGAGCAGAGTATCAACGACCTAAAAGCTGAGATGGGTGTCGAGGGCTCACCATCGCCGCTGCCTCCTTCCAAGGCAAATGCAGATGAATCAAAGAAAGATGAAGGTTCTGCCTAG

Coding sequence (CDS)

ATGACCGTTTTTGTGCAAAATCTTCTTCAGCAGATGCAATCTAGGTTCCAAACCATGTCTGACTCCATTATCACAAAGAATATCCTTCGAATTAATTTTATTTATTCTTTGGGGATTCAGATTAATTGGAAAAGTAGATTGCAGGATAGCTTTATTGTAATAATTGATAATAAATATGCTTTCTTTAACTTGAAAATACTCGACGAGATGGGAAGCCGCATAAATGAATTGGAGCAGAGTATCAACGACCTAAAAGCTGAGATGGGTGTCGAGGGCTCACCATCGCCGCTGCCTCCTTCCAAGGCAAATGCAGATGAATCAAAGAAAGATGAAGGTTCTGCCTAG

Protein sequence

MTVFVQNLLQQMQSRFQTMSDSIITKNILRINFIYSLGIQINWKSRLQDSFIVIIDNKYAFFNLKILDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKANADESKKDEGSA

Homology

[Close]

BLAST of Tan0017742 vs. ExPASy Swiss-Prot
Match: Q8GW48 (Heat shock factor-binding protein OS=Arabidopsis thaliana OX=3702 GN=HSBP PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.8e-14
Identity = 53/114 (46.49%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 1   MTVFVQNLLQQMQSRFQTMSDSIITKNILRINFIYSLGIQINWKSRLQDSFIVIIDNKYA 60
           MT FVQNLLQQMQ+RFQTMSDSIITK                                  
Sbjct: 16  MTAFVQNLLQQMQTRFQTMSDSIITK---------------------------------- 75

Query: 61  FFNLKILDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKANADESKKDEGSA 115
                 +D+MG RINELEQSINDL+AEMGVEG+P   PP+  + DE K    S+
Sbjct: 76  ------IDDMGGRINELEQSINDLRAEMGVEGTP---PPASKSGDEPKTPASSS 86

[Close]

BLAST of Tan0017742 vs. NCBI nr
Match: TXG63457.1 (hypothetical protein EZV62_010451 [Acer yangbiense])

HSP 1 Score: 117.5 bits (293), Expect = 7.7e-23
Identity = 72/114 (63.16%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 1   MTVFVQNLLQQMQSRFQTMSDSIITKNILRINFIYSLGIQINWKSRLQDSFIVIIDNKYA 60
           MTVFVQNLLQQMQ+RFQTMSDSI+TKNIL   F Y     IN    L+ S          
Sbjct: 16  MTVFVQNLLQQMQNRFQTMSDSIVTKNIL---FPYVEFDAINVTLSLEFS---------G 75

Query: 61  FFNLKILDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKANADESKKDEGSA 115
           F N  +LDEMG RINELEQSINDL+AEMGVEGSPSPL PSK  + + K++EGSA
Sbjct: 76  FLNFNVLDEMGGRINELEQSINDLRAEMGVEGSPSPLAPSKTKSGDVKQEEGSA 117

[Close]

BLAST of Tan0017742 vs. NCBI nr
Match: AES61808.2 (heat shock factor-binding protein [Medicago truncatula])

HSP 1 Score: 111.7 bits (278), Expect = 4.2e-21
Identity = 69/114 (60.53%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MTVFVQNLLQQMQSRFQTMSDSIITKNILRINF-IYSLGIQINWKSRLQDSFIVIIDNKY 60
           MT FVQNLLQQMQSRFQTMSDSI+TKNIL   F +  L    N++S              
Sbjct: 16  MTAFVQNLLQQMQSRFQTMSDSIVTKNILLAFFNLIKLVQYSNFESN------------- 75

Query: 61  AFFNLKILDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKANADESKKDEGS 114
           AF +   LD+MGSRINELEQSINDL+AEMGVE SPSP  P K   +ESKK+EGS
Sbjct: 76  AFLDTNALDDMGSRINELEQSINDLRAEMGVESSPSPAAPEKPKEEESKKEEGS 116

[Close]

BLAST of Tan0017742 vs. NCBI nr
Match: XP_022150885.1 (heat shock factor-binding protein 1 [Momordica charantia])

HSP 1 Score: 110.9 bits (276), Expect = 7.2e-21
Identity = 69/114 (60.53%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 1   MTVFVQNLLQQMQSRFQTMSDSIITKNILRINFIYSLGIQINWKSRLQDSFIVIIDNKYA 60
           MTVFVQNLLQQMQSRFQTMSDSIITK                                  
Sbjct: 16  MTVFVQNLLQQMQSRFQTMSDSIITK---------------------------------- 75

Query: 61  FFNLKILDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKANADESKKDEGSA 115
                 +DEMGSRINELEQSINDLKAEMGVEGSPSPLP SK+NADE KK+EGSA
Sbjct: 76  ------IDEMGSRINELEQSINDLKAEMGVEGSPSPLPSSKSNADEGKKEEGSA 89

[Close]

BLAST of Tan0017742 vs. NCBI nr
Match: XP_008451602.1 (PREDICTED: heat shock factor-binding protein 1 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 7.2e-21
Identity = 69/114 (60.53%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 1   MTVFVQNLLQQMQSRFQTMSDSIITKNILRINFIYSLGIQINWKSRLQDSFIVIIDNKYA 60
           MT+FVQNLLQQMQSRFQTMSDSIITK                                  
Sbjct: 16  MTIFVQNLLQQMQSRFQTMSDSIITK---------------------------------- 75

Query: 61  FFNLKILDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKANADESKKDEGSA 115
                 +DEMGSRINELEQSINDLKAEMGVEGSPSPLPPSK+ ADE KKDEGSA
Sbjct: 76  ------IDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 89

[Close]

BLAST of Tan0017742 vs. NCBI nr
Match: XP_004136040.1 (heat shock factor-binding protein isoform X2 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-20
Identity = 69/114 (60.53%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 1   MTVFVQNLLQQMQSRFQTMSDSIITKNILRINFIYSLGIQINWKSRLQDSFIVIIDNKYA 60
           MT+FVQNLLQQMQSRFQTMSDSIITK                                  
Sbjct: 16  MTIFVQNLLQQMQSRFQTMSDSIITK---------------------------------- 75

Query: 61  FFNLKILDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKANADESKKDEGSA 115
                 +DEMGSRINELEQSINDLKAEMGVEGSPSPLPPSK  ADE KKDEGSA
Sbjct: 76  ------IDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKPVADEVKKDEGSA 89

[Close]

BLAST of Tan0017742 vs. ExPASy TrEMBL
Match: A0A5C7I294 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010451 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.7e-23
Identity = 72/114 (63.16%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 1   MTVFVQNLLQQMQSRFQTMSDSIITKNILRINFIYSLGIQINWKSRLQDSFIVIIDNKYA 60
           MTVFVQNLLQQMQ+RFQTMSDSI+TKNIL   F Y     IN    L+ S          
Sbjct: 16  MTVFVQNLLQQMQNRFQTMSDSIVTKNIL---FPYVEFDAINVTLSLEFS---------G 75

Query: 61  FFNLKILDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKANADESKKDEGSA 115
           F N  +LDEMG RINELEQSINDL+AEMGVEGSPSPL PSK  + + K++EGSA
Sbjct: 76  FLNFNVLDEMGGRINELEQSINDLRAEMGVEGSPSPLAPSKTKSGDVKQEEGSA 117

[Close]

BLAST of Tan0017742 vs. ExPASy TrEMBL
Match: G7IF89 (Heat shock factor-binding protein OS=Medicago truncatula OX=3880 GN=MTR_1g088760 PE=3 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 69/114 (60.53%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MTVFVQNLLQQMQSRFQTMSDSIITKNILRINF-IYSLGIQINWKSRLQDSFIVIIDNKY 60
           MT FVQNLLQQMQSRFQTMSDSI+TKNIL   F +  L    N++S              
Sbjct: 16  MTAFVQNLLQQMQSRFQTMSDSIVTKNILLAFFNLIKLVQYSNFESN------------- 75

Query: 61  AFFNLKILDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKANADESKKDEGS 114
           AF +   LD+MGSRINELEQSINDL+AEMGVE SPSP  P K   +ESKK+EGS
Sbjct: 76  AFLDTNALDDMGSRINELEQSINDLRAEMGVESSPSPAAPEKPKEEESKKEEGS 116

[Close]

BLAST of Tan0017742 vs. ExPASy TrEMBL
Match: A0A6J1D9Q0 (heat shock factor-binding protein 1 OS=Momordica charantia OX=3673 GN=LOC111018928 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.5e-21
Identity = 69/114 (60.53%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 1   MTVFVQNLLQQMQSRFQTMSDSIITKNILRINFIYSLGIQINWKSRLQDSFIVIIDNKYA 60
           MTVFVQNLLQQMQSRFQTMSDSIITK                                  
Sbjct: 16  MTVFVQNLLQQMQSRFQTMSDSIITK---------------------------------- 75

Query: 61  FFNLKILDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKANADESKKDEGSA 115
                 +DEMGSRINELEQSINDLKAEMGVEGSPSPLP SK+NADE KK+EGSA
Sbjct: 76  ------IDEMGSRINELEQSINDLKAEMGVEGSPSPLPSSKSNADEGKKEEGSA 89

[Close]

BLAST of Tan0017742 vs. ExPASy TrEMBL
Match: A0A1S3BSN9 (heat shock factor-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103492833 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.5e-21
Identity = 69/114 (60.53%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 1   MTVFVQNLLQQMQSRFQTMSDSIITKNILRINFIYSLGIQINWKSRLQDSFIVIIDNKYA 60
           MT+FVQNLLQQMQSRFQTMSDSIITK                                  
Sbjct: 16  MTIFVQNLLQQMQSRFQTMSDSIITK---------------------------------- 75

Query: 61  FFNLKILDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKANADESKKDEGSA 115
                 +DEMGSRINELEQSINDLKAEMGVEGSPSPLPPSK+ ADE KKDEGSA
Sbjct: 76  ------IDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKSVADEVKKDEGSA 89

[Close]

BLAST of Tan0017742 vs. ExPASy TrEMBL
Match: A0A7N2MSQ6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-20
Identity = 67/114 (58.77%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 1   MTVFVQNLLQQMQSRFQTMSDSIITKNILRINFIYSLGIQINWKSRLQDSFIVIIDNKYA 60
           MTVFVQNLLQQMQ+RFQ MSDSI+TKNIL  + IY +   +N  S               
Sbjct: 16  MTVFVQNLLQQMQTRFQQMSDSIVTKNIL--DHIYEVLCLLNCCS--------------- 75

Query: 61  FFNLKILDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKANADESKKDEGSA 115
                 LDEMG RINELEQSINDL+AEMGVE SPSP+PP+K   D+ KK+EGSA
Sbjct: 76  ------LDEMGGRINELEQSINDLRAEMGVESSPSPVPPTKPQLDDVKKEEGSA 106

[Close]

BLAST of Tan0017742 vs. TAIR 10
Match: AT4G15802.1 (heat shock factor binding protein )

HSP 1 Score: 78.2 bits (191), Expect = 4.8e-15
Identity = 53/114 (46.49%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 1   MTVFVQNLLQQMQSRFQTMSDSIITKNILRINFIYSLGIQINWKSRLQDSFIVIIDNKYA 60
           MT FVQNLLQQMQ+RFQTMSDSIITK                                  
Sbjct: 16  MTAFVQNLLQQMQTRFQTMSDSIITK---------------------------------- 75

Query: 61  FFNLKILDEMGSRINELEQSINDLKAEMGVEGSPSPLPPSKANADESKKDEGSA 115
                 +D+MG RINELEQSINDL+AEMGVEG+P   PP+  + DE K    S+
Sbjct: 76  ------IDDMGGRINELEQSINDLRAEMGVEGTP---PPASKSGDEPKTPASSS 86

The following BLAST results are available for this feature:

BLAST of Tan0017742 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW48	6.8e-14	46.49	Heat shock factor-binding protein OS=Arabidopsis thaliana OX=3702 GN=HSBP PE=1 S...	[more]

BLAST of Tan0017742 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG63457.1	7.7e-23	63.16	hypothetical protein EZV62_010451 [Acer yangbiense]	[more]
AES61808.2	4.2e-21	60.53	heat shock factor-binding protein [Medicago truncatula]	[more]
XP_022150885.1	7.2e-21	60.53	heat shock factor-binding protein 1 [Momordica charantia]	[more]
XP_008451602.1	7.2e-21	60.53	PREDICTED: heat shock factor-binding protein 1 [Cucumis melo]	[more]
XP_004136040.1	1.2e-20	60.53	heat shock factor-binding protein isoform X2 [Cucumis sativus]	[more]

BLAST of Tan0017742 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7I294	3.7e-23	63.16	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010451 PE=3 SV=1	[more]
G7IF89	2.0e-21	60.53	Heat shock factor-binding protein OS=Medicago truncatula OX=3880 GN=MTR_1g088760...	[more]
A0A6J1D9Q0	3.5e-21	60.53	heat shock factor-binding protein 1 OS=Momordica charantia OX=3673 GN=LOC1110189...	[more]
A0A1S3BSN9	3.5e-21	60.53	heat shock factor-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103492833 PE=3...	[more]
A0A7N2MSQ6	2.3e-20	58.77	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]

BLAST of Tan0017742 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15802.1	4.8e-15	46.49	heat shock factor binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	GENE3D	1.20.5.430		coord: 1..81 e-value: 1.4E-22 score: 81.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..114
None	No IPR available	PANTHER	PTHR19424:SF8	HEAT SHOCK FACTOR-BINDING PROTEIN 1-LIKE	coord: 1..110
IPR009643	Heat shock factor binding 1	PFAM	PF06825	HSBP1	coord: 1..26 e-value: 1.1E-9 score: 38.0
IPR009643	Heat shock factor binding 1	PANTHER	PTHR19424	HEAT SHOCK FACTOR BINDING PROTEIN 1	coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0017742.1	Tan0017742.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005622	intracellular anatomical structure
molecular_function	GO:0003714	transcription corepressor activity