Tan0014964 (gene) Snake gourd v1

Overview


Name	Tan0014964
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ribosome production factor 1
Location	LG06: 8814607 .. 8824119 (+)
RNA-Seq Expression	Tan0014964
Synteny	Tan0014964

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTTTCGAAAGCAGCCCCCACGAATTCATCTTTTCTCTTCGTGTTGCAGAAGCTCACCGCCGGCTCCTTATCTCTTTCGTTCGTCGCCCCTCTCCTCTGTTCGACCCAACGCCGGCAGCCGACAAGCCAGCACACGTCGACATCTTCTATCCCGTCGTGCCTCCTTCTCTCCGCCGTCCAGCAACCCGCGACTGCAACCCACGATCTCTCCTCTCGTTCTTCCGGCGGTTCCGGCATCTGAACGCCGAATCTAAATCGGTTCCGACACTTCCAGCCGCCGTATTTCCTTTCTCTTCCCTATCTGGATAGTCCCCTAGTGAAACCGGTCGCCGTAGCTCATCGCCGGTGAGTTTTCCCTAAAACCATTTAGTTTTGGTTCAAGCGGTTCACTAGTTTTTAATCCGATTCCCTTAAATTAGAGTTTGGTTTTGAATAGATTGGGTCACGGCATCCAGATCCGAGCTCCACGCGCCGCCGCCGCTGCCGCCACCGTTTGGTTACTGCCGGTTAGCCTCGTTCTCTCGATGTCGTTTTAGTTCTCTATGTGATGGTTTGGTTACTTTGAATCAAGTTAATTGGATTGAAGTGTTTGGAACATGTTATGTTAAGTCTTTTGCTTGTTTATTAGGAACTCACTCGTGTTAAGGGAGTTGCTTGGAGCACGTGTTGAGCTCTTGAATCTTCGAATATCTAGGTAAGTAGTTAGTTGGATTAAGCCCCTCAAAGTTATCATTTGATTTGTTTGATTATGGTAATTTGTGAATTTTGAATTGATGTGCTGAAATTGTGATATGATACATACAATTGATATTGAGGTTGTGCTAGCGTTGTATGAACTAGGAATGAACTAAGAAAGTATTGTTATGGAGATAGGGGCTTAAGGCTTCAAGTTAAGGGTGAGACTTAAAAGCCTTTGATCGTAATAAGTTGAGAACGAATATTGTGGGTCTGAGATTGATGTGGTCGATAAGTGGTACTACGCTCGGGTCCCATCTCGAGGTTTGTATTTTGGAGTTTGTGAGTCACGAGTAAACTCTGGCTGGGTAGGAGGTTTTGGAATGACATCGACGTTTGGGGTTCAGAAAAGTTGGGCGAACCATCAAACTCAAAATAATCACACGTCCGAAGGGTCAGAAGAGGTTTAGTTCTCTTGGCACGTGTTCGTGGCCAGGGTTGCCACTGGTCAGAAATGGAGGGTTGAGTTGGTGGGACTCCGACCCGAGGTAAGTAGCCATTTGAATTTTCACGCAAGTTCGAAAGCGAGCGTACTTGCATAGTTAAAGATTTACTTGTTTTGAGTTGTTGGATCTGGTAGTATGCTTGCCTGCGTAGGAATAAGATCACGTTTCGTGTTTAACTGACTTGGAATATTATGAGATTTAGCATGATGTGGCCGTGACATCTTGTGCTCGGATTTCTGGCTTGAACTTTAACCTGCACGTGGTTGTTGTATCTTGTGCTCGAATTTCTTGCTTGAATTTTACCTGTACGGAGCTGCTTAGCTTATCGCAAGACTTGTGAGTTACTGAACATTGCGAGTATCTAGACTTGATTACATGAACCGAGCTTGCTATGTCATGATGTTGATTGCTTCTAGGAGTATCTAGGTATGGGCAAAACCTAGGGACTTGTAAGGCCTAGGATACCTTAGAACTATATTATAGGACCCGTGCCCCTACTTCTGAACCTTTCTAGTTAGTCTCAGGCTTCGGGTTTGGCGAGATTACTGAATCTCAATTTGCCTTTGTGGTCGGGCGGCAGATCATTGATGCTTCCCTTATTGCAAATGAGCTCATTGAAGATTATCACAAGCATAAGAAACAAGGTATTGTTATTAAGCTTGATTTTGAAAAGGCCTTCGATAAGGTGGATTGGGACTTCCTTGACCTTGTCCTCGCTAAAAAAGGATTTGGTAACACGTGGAGAAAGTGGACTCGGGGTTGTATTTCTTCTGCTAATTTATCCATCATTATTAATGGGCGACCCAGAGGCAAGATTATTGCTACTAGGGGGCTTAGGCAAGGTGACCTTCTCTCTCCCTTACTTTTTATTCTAATTGTTGATTGCTTTAGCAGGTTGCTATCATTTGAAGAGCAAAAAAGCCATATTAGTGGCTTTGATGTGGGTAATGGGATACTTAGTATCAATCACCTCCAGTTTGCTGATGACACCATTCTTTTCTCTGATCCCTCAAAGGAGCATATTATTGCCCTTCTGACACGGTCAAGGTTTTTGAAAAAGCATCAGGGCTATCGATTTATCATCACAAGTTTGAGATCAATGGCATTCATCTTCCCTCTTCATGTGTCTCAGATTTTGCTAAGGCTTATGGTTGCAAGACTGCCGATTGGCCTATGATTTATCTCGGGCTCCCTTTGAATAGCCTCAATCAAAATCACTCTGGCCCCCATCATTGAAAAGGTTGAGAGACGCCTCAAAGGATGGAAGGGTGCATATCTATCTAAAGGTGGTCGATTAACTCTTATTTAGGCTACTTTAACAAACCTTTCTACATACTATTTGTCCATATTCAAGTTACCATCGGAGACAACCAACACATTGGAGAAACTCTTTCGCCATTCCTTTGGAATGGCCCAAAAGAGAAGAGGGGCTTTCATTCTATCAGCTGGAAAACAGTATGTCGGCCCCTGGAAGAAGGTGGATTAGGGCTCATTGATCTTAAAACAAAAAATAAGAGCCTCCTTGCACAATGGATTTGGCGCTTTCATTCTGAAAAATCATCCCTATGGAGGAGATTCATTGCTGCCAAATTCGGAACCCAACATTTCGATCTTCATCCTGAACACAAGAAGCTTAGATATCATCAGGGACCATGGAAACACATTGTGACCCAAAATAGTTTGATTTTTGACAATGTTAGTTGTGTGGAGGGAAATGGCCAACAAACTCCTTTCTGGCATGATAAATGGCTGGGTGACAGCACCATCAAAGCTCTAGCCCCTCGACTTTTTGACTTATCCCGGAAGAAGTATGGCTCCATTGAGGATATGAGAGGGTCAGACAACACCTAATGGGACTTGGGTCTTCGACGAAATTTAAAGGAGGAAATTGCAGAGTGGGCATGCCTTTCAACCCTCCTTCCACCCACAACGCCTCGCACTAATATTGACACTTGGAGATGGAATCTTGATGCAACAAGCCTTTTCACCTCAAAATCGCTCTCCCTCAAGCTTAATTCCAGCCCTGAGCACCCCTCCAGGGAGTTGTACATCAACATTTGGAAAAGGCCTACTCCTAAAAAGATTCGCTTCTTTCTATGGGAGGTTAGCCATGAAGGCATTAATACGGCGGATACTCTTATTAAAAAGGCTTCTTGGATCGTTTCATCTCCTAATTGGTGTGTTCTCTGCAAACAAGCCAACGAATCCATAAGCCACCTTTTCACCACATGCCGTTACACATCCCAAATTTGGACCAAGATTCTCACAACCTTTAAGTTACAAATTGCTCTCCCAAGCAAGATGGAGGTGCTTCTTGAGACTTTTCTCTTAGGCCATCCCTTTACCACTAACAGAGCTTGCTTATGGGGCAATTTTATAAAAGCTTTCTTTTGGTCCGTCTAGATCGAGAGAAACGCCAGGATCTTCCAAGATTGCGCTCGGGATCAACAAAAGCTATTCGACTCTATCATCTTTTTAGCCATCTCTTGGTGTAAATTAACCCCATACTTTTGTGATTACAGTCTCACTTCTCTTGTTAACAGTTGAGACTCTTTTTTGTAATGGGTTCTCAACCCTTTGTTTTGTACATTTCATACCATCAATGAAATGATTTCACATGCTTCTCATTAAAAAAAAAAGTTTTTGATGTTGTAATATTGTAGTTTTAAGAGAGTGATTATCCTGAAGAAGGAAAAAAATGAAAGACTGATTATGATATGTTTTATGATGGCTTAATAGAGTAAGCTGAAGTACACATAGGTGGTAAAAAGTGCTCTTGACATCCCCTTCCTTTATTTAATTTTGGACCATTGGCCATATATGATTTGCTTCTCAACTTCACTTGTATCTATAGTGTAAATTTAAGTCAATTGGGTTATCTTTCTGTCCCCTTAAAACAAGTTTTTTTTTGAGTTGAAAATTCTGGTCTTTGATTAATGATTTATCTCAATTCCCTTCCAATTGCTTTCTTAATGGATATTTGTTAGACCCCCTGTTACCAAACATTATGTTAGGAGGGGCAAGAGGGTAAATACGAATGAGGAATCAGGGACCACAAAGGGGTGATATGTGTTGTACGTGTGACGTGCATGGGAGTGAGGGCTTAAAGGGGTTTTTTGTCTCTGTTTTTAGGCAGGCTTTATTTTGTGGAAAGTTCTCTGTAGGAGGGTGCCAGCCTCTCGAATCGCTGTGCAAGTTGTTATCGAATGCTTGTCTTTCCCCTTTCGGATTAATAGAATAACCCCTCTTCAAGATTGAAGAACTATCAATCTTTGGAGGGTTGGCTCCCCATTTCTGGTTCTCATTTCTAGTGGTTGAATCTTTCGTTTTCCTTTTCAAGAATAGTAAGGTATCGGATACCTAACAATATTATTTTTGGATTTCATACATACATTGACATTTTTTTAAACATGAAGTTAGTTCTTGCATCTCTCCAAGTACAACATCGATTACCTGTTTGTTTAATTGACTTATCCTTGAAGTTGAACTATATAATATTCGAGATATAAATGAATAAATTTGTACTTTGTCCACTTTTTGCTGGAATTGAGATTGACATGGGATAGAGAAAATTTGTTCTTCATTCTTCTCATAATGGCTTTCTCCCATAGTTACTTGCTTTCATATTTTGTTTTCCTTCATCAATTTCTGATTTATGTTACAGGTTGATCAAGGAGTATAGATGGGAGAGGAGAAGAAGAACAGGGATATAATCCCATCAATGATAAAAAACAAGGAAAAGAGGGCAGAAGTGCATGCCAACCTCAAGAACCAGAAGAGGCTTGAGAAACGCAAAAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGAGAAGAAGTATCACATTATCTATTCATCTACTTTGTTCATCTTCCGTCTAAGAGATTTAGACTCTCTTTTATTTTTATTCTTTCTGTAGCCTCTTCCTAGGAAGATTCCTCACACCATTGAGAACACAAGGGAGGTTGATGAGACGGTTTGCAAACCTGATGATAAAGAGGTTCTTCTTCTTCATTTTAACTCTTAGTATATGACATTTTCGTAGCTTTTGTTTAAAATGCTTGAAAACGTTTGGCTCTCCATGGGAGCCTTGCCCTCTCTCTGAACATGGTTCATATGTTTTTCTTTGTAATGCTTTTCATTTAGAATACACACTTGTAATATGTCCAGTTTTGATTCTCTACAGCTATTTGCTGGAAATGATGCTGATGAATTTAGTTCCATCATAAAGCGAGACATGTTGCCAAAAGTTCTAATTACTACTTGTCGGTTTAATTCTACTGTAAGAACCTTCATTATTACTAGTTATATAGTAATTTTGTTTCTGGCAACTTGCACTTCATGCAAACTAACCTAAAGCGTTTACATTTAAGGAGATTTGGTGCCTTATATTAAATCTTCTGCTTGGATGTGACTTACTATTTGCAGATTGGACCTGCTTTTATATCAGAGTTGCTTTCAGTGATACCAAATGCACATTACTACAAGAGAGGAACTAACGATTTGAAGAAGGTTCTCCTCATATTTTTATTTTCTAATGGACACATGGAAAAGGAAAATAAGAAAATTAAGAAAAAACAAGAATGTAGTATAGAAGAAAGACTTGTAGCTTGTTATCCTGGCAATAACTTTGTGTGTGTGTGTGTGTGTGTGTGTTTGTTCTCTTTCTTGTAGATTATAGAATATGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTTCATACGAGTAGGAGAAAATTGGGTTAGTAGATAGTCTTTCATAAATCTTGCAGTTCCTTCTTGCATGTTAATTTGTCTCTTGCAAACCTGTTTTCTCTTTTTCTTTAATATTTTGTTATCTTAGCTGTTTAGTAAATTAGATACTTTCCTCAATCTAGATTAATTTTTTGTAATTCTTGCAGATGGCCTTCTAATTATTGGCTTACCTGAGGGTCCTACTGCCCATTTTAAGATATCAAATGTTGTCTTACGTAAGGATATTAAGGTATGCTCTTTCAAGTCAATGAAATAGAATGCTCCACTTATTTCTGTTTATGAATTGTTGTGCTGTATGTTAACTACTACTGGATTTTTCAGAGGAATAGATTTCCATGAAACTTTTACCATTTTATTTTCTTGCTTGTAGAATCATGGAAATCCAACCAGCCATGAGCCGGAGCTTGTATTGACTAACTTCACAACACGCCTTGGTCTTCGTGTTGGAAGGTTGCTTTCTGTACCTAAATTTCGTTATCTGAAAATACTGCCTCTTGTAAGAGACTGCATTTCATATTTAGGGTTCTTGTTACTTTTTCCTGTTTATTATGCTTCTATGATTATGATATCTGTGTTCTCAAGTTGTTCTCAATGCATTGACTTTTATTGTTGTTTCTTTAGATTAATACAGTCACTATTCCCTCAAGATCCTAATTTTCGTGGTCGGCGAGTTGTGACATTTCACAACCAACGGGATTTTATATTCTTCCGGCATCATCGGTGTGATACCATATCTGGTTCAAATATTTTCACTGTATGCTTGAGAGTTTGAATTATGATGAATTCGTGCTTTTATCTTCTCAGATACATTTTTGAAGGCAAGGAGAATAAAAAAGAGGCCGACACAAAAAGTAAGTCCAAGGATACCAAGGGCGAGAAAGTTTCTCAGCAGAAAGTAGTTGCACGGCTTCAGGTAAATATTAATATCTGCCCTTCCACTTCACATAAAAGGATGCTTTTTTATGATATCTATGGTGATTTCTTTTTTGATGAGGAAACTTTAATATTCGGTAACTTGTTTTTATCCCGTCTCTCTTATTACAACTTGGATCTTTTTTCCTCTTCTAATTTTTTTTGGTGGTGGTGATTAACAATAATTCATTCATAATCAACGAAGGGTACAAAGATTGGACTAGGAAAATTTAGAAACGTTCAGCAGGTTTTGTGAGAAATAGTATAGAAGCCAAAAGAACACTTATCTTGGTTTACACTGTCACTAATCCTCACTCTTCATCACTAGTTTTTCTATCATTTTTGTTTGTTTGTTTTTTAAATCAATTAGGAAACTGACTGGTGTGTGGGGTAAAATTGGCTTATGTGAGAACATTCCTTAGTTTATGGTTTCGTTATCCTCCTTGTGCAATATCACATCTCGCCTTTTCCAGATAATCATGTTTCATATTCCCTTGAACTCAATCTCTCTTCTCCATCGATGAAATAAACAATTTTGACCTTATCCAAGGGCGGGCTTCATTGTCAATATCATATATTCTGCCTTTTCCAGATAATGATGTTTTGTATTCAAGCAAGCAACCATCACATGAAGTTAGACTGACCAAAACTGCTATGTTATTCTTTCTGTGTCAATTATGAAATTTTGTGTTTAGATTTGAATGAGAAAGTGATACTAGGAGAATCTAAAAGACGAGAAGTAGTTAGAGCAAAAACAGACTAACTAAATAATGAGACGGAGGAATATGAGTGTAGTAATAACTGATTCTGACTCTGAGACTTGATATTTAGGAATGCGGTCCTCGTTTCACAATGAAATTGATCAGTTTGCAGCATGGAACTTTCGATTCAAAAGGCGGGGAATATGAGTGGGTTCATAAGGTAAGTCCAAGTCTCTCTTATCCATTAGGATCTCAATCTGAAATACATACTATTAGATTCATATGATCCATCCATCCTGTTTATCTAATTCGTTGTTCCCTACTTCCTTTGAATTCCAGCCTGAAATGGATACAAGCCGTAGAAGATTTTTCTTATGACATTCTCAATGGACTTCATTACTTCTATTCCCGGGGTGTAAAAGTCAGGTTCATATAATATCATGGTAAGCAAACCTCAATAGCTTTTTCTTTCTCCTTTTTTTAATACAAAACAAACCAATCTCATTAGATGGAAGCTCTCTTTTTTGGAGAAATTGGTATGAAAGAAACAAAAAGGCTTTTTAGGTCGATGTTTTGTAGCCAAAAGTTAGTTTGTTTCTTTCATACCACCATTTTTTGTAATTTTCCCCAAAGAAAACTTAGGCTTTGATTGATAGCCATTTGCGTTTTGAAATTATCTTTGTTTTTTCACAATTTCTCTTTCATCTTCTCTACAATAATTTTCATCTTTCTTGAGGTACCATTTAAATTTATAGCCAAATTTCAAAAATAAAAACAAAATTTTGAAAACTATTTTTTTTAGTTTTCAAAACAAGAAAACACTTTAATTCTTATCCAAATTCTAAAAACAAAAATAAGTTTTCTAAAACTTTTTTTTTTTTTTTTAAGTTTTCAAAACTTAGCTTGGTTTTTGAAAACACATCTTAAAAGTAGATAAGAAAACATGGAAAACTATAGGTGCAAGTAGTATTTTTAGGCTTAATTTTCAAAATCCAAAAACCAAATGATTATCAAACGGGGCCATGTTACTTGGTTTTTATTTAACTGTGGGGTGGTTGGTTATTTGTTTTTAGTTTACTGATTACTTATTATCTATTTTTAAAATCCTAACCAAATTCTCAAAAATAAAACAAGCATTTTCATAGTCATCTGAAGGTATTAAAACTTTAGGGGTTTTCTGGCAACTAAATGTAGGTTAGATCGTTGTTTTGTGAAAGTAGTCCAGTTATGGGGTATATGTGTAAAATAACCCGAACACACACGAATGTAAAAAGAAATATAACATCAAATGAGAACATTTTGAGATGTTTGTGGCGTTGGGTAGGTTATAATAGTATATGAGTTATAATAGTTTGTGGAGTTATATAACTTATGTTTAGGATGTAGAGTTATTTAGTTTGGGTATAATAGTCTGTGTTTGGGTGTGAAGTATTTCACAGACTATTATAACGCATGCTCCAAATAGTCCTTTTATAACTATTGTCCTCGTGATTGTGCAGGGCGGATTGTTGATCAAATATGAATCTCTTTTTCGGCCTGGTTGTAGGTTAGAAGTGCATTTACTTTTGACTATTAAAAATTTTGTAGCATTGACTTAAAGGTTGAGTTTTGCTTCAGGCTATATATTCGTTCTCTTATCTTATCTGGGGGGTTTAAAAGGGCCAAGATTCACAAACTTAGAGAATGCGAATTGGCATGTGAGGGCCTAGTTTAATAGTCTTCTAAAGTTTTGATTTTGTGTTTAGCAGTCCTTTGATCTATTTGATACACAGTTGAGAGTCCAAGGAGTTGTTAACCACTTTAAAGCTCAAGTATTTATTAGTTACACTGCTAAAAAGTATAGGTACTTGTTAGTATTGAAGTCTATTTTGAAATTGAGATATGGGGTGCATAACTCAACTAAATTACCATGCCAATAATTATTAAACAAAAGAGGTGGCAACAGAG

mRNA sequence

GGTTTTCGAAAGCAGCCCCCACGAATTCATCTTTTCTCTTCGTGTTGCAGAAGCTCACCGCCGGCTCCTTATCTCTTTCGTTCGTCGCCCCTCTCCTCTGTTCGACCCAACGCCGGCAGCCGACAAGCCAGCACACGTCGACATCTTCTATCCCGTCGTGCCTCCTTCTCTCCGCCGTCCAGCAACCCGCGACTGCAACCCACGATCTCTCCTCTCGTTCTTCCGGCGGTTCCGGCATCTGAACGCCGAATCTAAATCGGTTCCGACACTTCCAGCCGCCGTATTTCCTTTCTCTTCCCTATCTGGATAGTCCCCTAGTGAAACCGGTCGCCGTAGCTCATCGCCGATTGGGTCACGGCATCCAGATCCGAGCTCCACGCGCCGCCGCCGCTGCCGCCACCGTTTGGTTACTGCCGGAACTCACTCGTGTTAAGGGAGTTGCTTGGAGCACGTGTTGAGCTCTTGAATCTTCGAATATCTAGGTTGATCAAGGAGTATAGATGGGAGAGGAGAAGAAGAACAGGGATATAATCCCATCAATGATAAAAAACAAGGAAAAGAGGGCAGAAGTGCATGCCAACCTCAAGAACCAGAAGAGGCTTGAGAAACGCAAAAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGAGAAGAACCTCTTCCTAGGAAGATTCCTCACACCATTGAGAACACAAGGGAGGTTGATGAGACGGTTTGCAAACCTGATGATAAAGAGCTATTTGCTGGAAATGATGCTGATGAATTTAGTTCCATCATAAAGCGAGACATGTTGCCAAAAGTTCTAATTACTACTTGTCGGTTTAATTCTACTATTGGACCTGCTTTTATATCAGAGTTGCTTTCAGTGATACCAAATGCACATTACTACAAGAGAGGAACTAACGATTTGAAGAAGATTATAGAATATGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTTCATACGAGTAGGAGAAAATTGGATGGCCTTCTAATTATTGGCTTACCTGAGGGTCCTACTGCCCATTTTAAGATATCAAATGTTGTCTTACGTAAGGATATTAAGAATCATGGAAATCCAACCAGCCATGAGCCGGAGCTTGTATTGACTAACTTCACAACACGCCTTGGTCTTCGTGTTGGAAGATTAATACAGTCACTATTCCCTCAAGATCCTAATTTTCGTGGTCGGCGAGTTGTGACATTTCACAACCAACGGGATTTTATATTCTTCCGGCATCATCGATACATTTTTGAAGGCAAGGAGAATAAAAAAGAGGCCGACACAAAAAGTAAGTCCAAGGATACCAAGGGCGAGAAAGTTTCTCAGCAGAAAGTAGTTGCACGGCTTCAGGAATGCGGTCCTCGTTTCACAATGAAATTGATCAGTTTGCAGCATGGAACTTTCGATTCAAAAGGCGGGGAATATGAGTGGGTTCATAAGCCTGAAATGGATACAAGCCGTAGAAGATTTTTCTTATGACATTCTCAATGGACTTCATTACTTCTATTCCCGGGGTGTAAAAGTCAGGTTCATATAATATCATGGGCGGATTGTTGATCAAATATGAATCTCTTTTTCGGCCTGGTTGTAGGTTAGAAGTGCATTTACTTTTGACTATTAAAAATTTTGTAGCATTGACTTAAAGGTTGAGTTTTGCTTCAGGCTATATATTCGTTCTCTTATCTTATCTGGGGGGTTTAAAAGGGCCAAGATTCACAAACTTAGAGAATGCGAATTGGCATGTGAGGGCCTAGTTTAATAGTCTTCTAAAGTTTTGATTTTGTGTTTAGCAGTCCTTTGATCTATTTGATACACAGTTGAGAGTCCAAGGAGTTGTTAACCACTTTAAAGCTCAAGTATTTATTAGTTACACTGCTAAAAAGTATAGGTACTTGTTAGTATTGAAGTCTATTTTGAAATTGAGATATGGGGTGCATAACTCAACTAAATTACCATGCCAATAATTATTAAACAAAAGAGGTGGCAACAGAG

Coding sequence (CDS)

ATGGGAGAGGAGAAGAAGAACAGGGATATAATCCCATCAATGATAAAAAACAAGGAAAAGAGGGCAGAAGTGCATGCCAACCTCAAGAACCAGAAGAGGCTTGAGAAACGCAAAAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGAGAAGAACCTCTTCCTAGGAAGATTCCTCACACCATTGAGAACACAAGGGAGGTTGATGAGACGGTTTGCAAACCTGATGATAAAGAGCTATTTGCTGGAAATGATGCTGATGAATTTAGTTCCATCATAAAGCGAGACATGTTGCCAAAAGTTCTAATTACTACTTGTCGGTTTAATTCTACTATTGGACCTGCTTTTATATCAGAGTTGCTTTCAGTGATACCAAATGCACATTACTACAAGAGAGGAACTAACGATTTGAAGAAGATTATAGAATATGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTTCATACGAGTAGGAGAAAATTGGATGGCCTTCTAATTATTGGCTTACCTGAGGGTCCTACTGCCCATTTTAAGATATCAAATGTTGTCTTACGTAAGGATATTAAGAATCATGGAAATCCAACCAGCCATGAGCCGGAGCTTGTATTGACTAACTTCACAACACGCCTTGGTCTTCGTGTTGGAAGATTAATACAGTCACTATTCCCTCAAGATCCTAATTTTCGTGGTCGGCGAGTTGTGACATTTCACAACCAACGGGATTTTATATTCTTCCGGCATCATCGATACATTTTTGAAGGCAAGGAGAATAAAAAAGAGGCCGACACAAAAAGTAAGTCCAAGGATACCAAGGGCGAGAAAGTTTCTCAGCAGAAAGTAGTTGCACGGCTTCAGGAATGCGGTCCTCGTTTCACAATGAAATTGATCAGTTTGCAGCATGGAACTTTCGATTCAAAAGGCGGGGAATATGAGTGGGTTCATAAGCCTGAAATGGATACAAGCCGTAGAAGATTTTTCTTATGA

Protein sequence

MGEEKKNRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPRKIPHTIENTREVDETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVTFHNQRDFIFFRHHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

Homology

[Close]

BLAST of Tan0014964 vs. ExPASy Swiss-Prot
Match: Q8AVP1 (Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 2.1e-71
Identity = 156/326 (47.85%), Postives = 204/326 (62.58%), Query Frame = 0


Query: 13  SMIKNKEKRAEVHANLKNQKRLEK----RKRAKARDAAEKQALELGEEPLPRKIPHTIEN 72
           S IKNK++R  +   LK +KR EK    +KR K R+A       LG++  P+ +P TIEN
Sbjct: 49  SEIKNKQRRQFMFIKLKQEKRKEKLILRKKRKKEREA-------LGDKAPPKPVPKTIEN 108

Query: 73  TREVDETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAFISELLSVI 132
            R  DET   P D+E+      DEF+    +   PK+LITT          F  +L S+I
Sbjct: 109 QRVYDETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSII 168

Query: 133 PNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVV 192
           PN+  Y R    LKKII    ++D+T L+V++  R+  +GL++  LP+GPTAHFKISNV 
Sbjct: 169 PNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVR 228

Query: 193 LRKDIKNHG-NPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVTFHNQRDF 252
           LRK++K  G  PT H+PE++L NFTTRLG  +GR+  SL+P DP+F GR+V TFHNQRD+
Sbjct: 229 LRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDY 288

Query: 253 IFFRHHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKLISLQHGT 312
           IFFR+HRY+F+                      S++KV   +QE GPRFT+KL SLQ GT
Sbjct: 289 IFFRYHRYLFK----------------------SEKKV--GIQELGPRFTLKLRSLQKGT 343

Query: 313 FDSKGGEYEWVHK-PEMDTSRRRFFL 333
           FDSK GEYEWVHK  EMDTSRR+F L
Sbjct: 349 FDSKYGEYEWVHKRHEMDTSRRKFHL 343

[Close]

BLAST of Tan0014964 vs. ExPASy Swiss-Prot
Match: Q5R631 (Ribosome production factor 1 OS=Pongo abelii OX=9601 GN=RPF1 PE=2 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.5e-71
Identity = 156/322 (48.45%), Postives = 200/322 (62.11%), Query Frame = 0


Query: 13  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPRKIPHTIENTREV 72
           S IKNKE+R  +    K Q+R EK     A+   +K+   LG++  P+ +P TI+N R  
Sbjct: 55  SEIKNKERRHLMFTRWKQQQRKEK---LAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 114

Query: 73  DETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAFISELLSVIPNAH 132
           DET   P+D+E+      DEF+S   +   PK+LITT             +L +VIPN+H
Sbjct: 115 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 174

Query: 133 YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKD 192
            Y R    LKKII    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRK+
Sbjct: 175 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 234

Query: 193 IKNHG-NPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVTFHNQRDFIFFR 252
           IK  G +PT H PE++L NFTTRLG  +GR+  SLFP +P F GR+V TFHNQRD+IFFR
Sbjct: 235 IKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 294

Query: 253 HHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKLISLQHGTFDSK 312
            HRYIF                       S++KV   +QE GPRFT+KL SLQ GTFDSK
Sbjct: 295 FHRYIFR----------------------SEKKV--GIQELGPRFTLKLRSLQKGTFDSK 349

Query: 313 GGEYEWVHKP-EMDTSRRRFFL 333
            GEYEWVHKP EMDTSRR+F L
Sbjct: 355 YGEYEWVHKPREMDTSRRKFHL 349

[Close]

BLAST of Tan0014964 vs. ExPASy Swiss-Prot
Match: Q9H9Y2 (Ribosome production factor 1 OS=Homo sapiens OX=9606 GN=RPF1 PE=1 SV=2)

HSP 1 Score: 268.9 bits (686), Expect = 7.9e-71
Identity = 155/322 (48.14%), Postives = 200/322 (62.11%), Query Frame = 0


Query: 13  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPRKIPHTIENTREV 72
           S IKNK++R  +    K Q+R EK     A+   +K+   LG++  P+ +P TI+N R  
Sbjct: 55  SEIKNKQRRHLMFTRWKQQQRKEK---LAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 114

Query: 73  DETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAFISELLSVIPNAH 132
           DET   P+D+E+      DEF+S   +   PK+LITT             +L +VIPN+H
Sbjct: 115 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 174

Query: 133 YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKD 192
            Y R    LKKII    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRK+
Sbjct: 175 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 234

Query: 193 IKNHG-NPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVTFHNQRDFIFFR 252
           IK  G +PT H PE++L NFTTRLG  +GR+  SLFP +P F GR+V TFHNQRD+IFFR
Sbjct: 235 IKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 294

Query: 253 HHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKLISLQHGTFDSK 312
            HRYIF                       S++KV   +QE GPRFT+KL SLQ GTFDSK
Sbjct: 295 FHRYIFR----------------------SEKKV--GIQELGPRFTLKLRSLQKGTFDSK 349

Query: 313 GGEYEWVHKP-EMDTSRRRFFL 333
            GEYEWVHKP EMDTSRR+F L
Sbjct: 355 YGEYEWVHKPREMDTSRRKFHL 349

[Close]

BLAST of Tan0014964 vs. ExPASy Swiss-Prot
Match: Q7TND5 (Ribosome production factor 1 OS=Mus musculus OX=10090 GN=Rpf1 PE=2 SV=2)

HSP 1 Score: 268.9 bits (686), Expect = 7.9e-71
Identity = 155/322 (48.14%), Postives = 201/322 (62.42%), Query Frame = 0


Query: 13  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPRKIPHTIENTREV 72
           S IKNK++R  +    K Q+R EK     A+   +K+   LG++  P+ +P TI+N R  
Sbjct: 55  SEIKNKQRRHLMFTRWKQQQRKEK---LAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 114

Query: 73  DETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAFISELLSVIPNAH 132
           DET   P+D+E+      DEF+S   R   PK+LITT             +L +VIP++H
Sbjct: 115 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 174

Query: 133 YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKD 192
            Y R    LKKII    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRK+
Sbjct: 175 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 234

Query: 193 IKNHG-NPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVTFHNQRDFIFFR 252
           IK  G +PT H PE++L NFTTRLG  +GR+  SLFP +P F GR+V TFHNQRD+IFFR
Sbjct: 235 IKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 294

Query: 253 HHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKLISLQHGTFDSK 312
            HRYIF+                      S++KV   +QE GPRFT+KL SLQ GTFDSK
Sbjct: 295 FHRYIFK----------------------SEKKV--GIQELGPRFTLKLRSLQKGTFDSK 349

Query: 313 GGEYEWVHKP-EMDTSRRRFFL 333
            GEYEWVHKP EMDTSRR+F L
Sbjct: 355 YGEYEWVHKPREMDTSRRKFHL 349

[Close]

BLAST of Tan0014964 vs. ExPASy Swiss-Prot
Match: Q6IQU6 (Ribosome production factor 1 OS=Danio rerio OX=7955 GN=rpf1 PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 5.1e-70
Identity = 156/322 (48.45%), Postives = 202/322 (62.73%), Query Frame = 0


Query: 13  SMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPRKIPHTIENTREV 72
           S IKNK++R  +   LK +KR +KR   K +   E++AL+  ++  P+++P TIEN R  
Sbjct: 36  SEIKNKQRRHTMFLKLKEEKR-KKRMELKKKKKKERKALD--DKAPPKEVPKTIENQRIY 95

Query: 73  DETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAFISELLSVIPNAH 132
           DET   P+D+E+      DEFS+   R   PKVLITT          F  +L +VIP+A+
Sbjct: 96  DETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAY 155

Query: 133 YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKD 192
            Y R    LKK+I    ++ FT LMV++  R+  +G+++  LP+GPTAHFK+S+V LRK+
Sbjct: 156 VYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKE 215

Query: 193 IKNHG-NPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVTFHNQRDFIFFR 252
           +K  G NPT H PE++L NFTTRLG  +GRL  +LFP DP F GR+V TFHNQRDFIFFR
Sbjct: 216 MKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFR 275

Query: 253 HHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKLISLQHGTFDSK 312
            HRYIF  K  KK                        +QE GPRFT+KL SLQ GTFDSK
Sbjct: 276 FHRYIF--KNEKK----------------------VGIQELGPRFTLKLRSLQKGTFDSK 330

Query: 313 GGEYEWVHK-PEMDTSRRRFFL 333
            GEYEWVHK  EMD+SRR+F L
Sbjct: 336 FGEYEWVHKRHEMDSSRRKFHL 330

[Close]

BLAST of Tan0014964 vs. NCBI nr
Match: XP_008443155.1 (PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_008443156.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_016899701.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >KAA0053947.1 ribosome production factor 1 isoform X1 [Cucumis melo var. makuwa] >TYK25457.1 ribosome production factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 628.6 bits (1620), Expect = 3.0e-176
Identity = 316/332 (95.18%), Postives = 324/332 (97.59%), Query Frame = 0


Query: 1   MGEEKKNRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPR 60
           MGEEKKN+ IIPSMIKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE  PR
Sbjct: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPHTIENTREVDETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAF 120
           KIP TIENTREVDETVCKPDD+ELFAGNDADEFSSIIKRD+LPKVLITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRKDIKNHGNPT H+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKDIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFE KENKKEAD+K KSKDTKGEKV QQKV+ARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of Tan0014964 vs. NCBI nr
Match: XP_038906205.1 (ribosome production factor 1 [Benincasa hispida])

HSP 1 Score: 625.5 bits (1612), Expect = 2.5e-175
Identity = 313/332 (94.28%), Postives = 323/332 (97.29%), Query Frame = 0


Query: 1   MGEEKKNRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPR 60
           MGEE KNR IIPSMIKNKEKRAEVHANLKNQK+LEKRKRAKARDAAEKQALELGEE  PR
Sbjct: 1   MGEENKNRGIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPHTIENTREVDETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAF 120
           KIP TIENTREVDET+CKPDD+ELFAGNDADEFSSIIKR++LPKVLITTCRFNSTIGP F
Sbjct: 61  KIPRTIENTREVDETLCKPDDEELFAGNDADEFSSIIKREILPKVLITTCRFNSTIGPTF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRKDIKNHGNPTSH+PELVLTNFTTRLGLR+GRLIQ+LFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRIGRLIQALFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFE KENKKEAD+K KSKDTKGEKV QQKV+ARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of Tan0014964 vs. NCBI nr
Match: XP_031737500.1 (ribosome production factor 1 [Cucumis sativus] >KGN59366.1 hypothetical protein Csa_002461 [Cucumis sativus])

HSP 1 Score: 620.2 bits (1598), Expect = 1.1e-173
Identity = 310/332 (93.37%), Postives = 322/332 (96.99%), Query Frame = 0


Query: 1   MGEEKKNRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPR 60
           MGEEKKN+ I+PS IKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE  PR
Sbjct: 1   MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPHTIENTREVDETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAF 120
           KIP TIENTREVDETVCKPDD+ELFAGNDADEFSSIIKRD+LPK+LITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRK+IKNHGNPT H+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFE KENKKEAD+K KSK TKGEKV QQKV+ARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of Tan0014964 vs. NCBI nr
Match: XP_022971273.1 (ribosome production factor 1 [Cucurbita maxima] >XP_023539259.1 ribosome production factor 1 [Cucurbita pepo subsp. pepo] >KAG6596207.1 Ribosome production factor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 619.4 bits (1596), Expect = 1.8e-173
Identity = 310/332 (93.37%), Postives = 323/332 (97.29%), Query Frame = 0


Query: 1   MGEEKKNRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPR 60
           MGEEKKNRD+IPSMIKNKEKRAEVHANLKNQK+LEKRKRAKARDAAEKQALELGEEP PR
Sbjct: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60

Query: 61  KIPHTIENTREVDETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAF 120
           K P TIENTREVDETVCKPDD+ELFAGNDADEFSSIIKRD++PKVLITTCRFNS+IGP F
Sbjct: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKIIEYANA+DFTSL+VVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANARDFTSLIVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRKDIKNHGNPT HEPELVLTNFTTRLGLR+GRLIQ+LFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKDIKNHGNPTGHEPELVLTNFTTRLGLRIGRLIQTLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFEGKENKKE D+K+KSKD KGEK SQ KVVARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFEGKENKKEVDSKTKSKD-KGEKASQPKVVARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFD+KGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 331

[Close]

BLAST of Tan0014964 vs. NCBI nr
Match: XP_022943997.1 (ribosome production factor 1 [Cucurbita moschata])

HSP 1 Score: 619.0 bits (1595), Expect = 2.4e-173
Identity = 309/332 (93.07%), Postives = 323/332 (97.29%), Query Frame = 0


Query: 1   MGEEKKNRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPR 60
           MGEEKKNRD++PSMIKNKEKRAEVHANLKNQK+LEKRKRAKARDAAEKQALELGEEP PR
Sbjct: 1   MGEEKKNRDLVPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60

Query: 61  KIPHTIENTREVDETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAF 120
           K P TIENTREVDETVCKPDD+ELFAGNDADEFSSIIKRD++PKVLITTCRFNS+IGP F
Sbjct: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKIIEYANA+DFTSL+VVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANARDFTSLIVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRKDIKNHGNPT HEPELVLTNFTTRLGLR+GRLIQ+LFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKDIKNHGNPTGHEPELVLTNFTTRLGLRIGRLIQTLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFEGKENKKE D+K+KSKD KGEK SQ KVVARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFEGKENKKEVDSKTKSKD-KGEKASQPKVVARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFD+KGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 331

[Close]

BLAST of Tan0014964 vs. ExPASy TrEMBL
Match: A0A1S3B854 (ribosome production factor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486828 PE=4 SV=1)

HSP 1 Score: 628.6 bits (1620), Expect = 1.4e-176
Identity = 316/332 (95.18%), Postives = 324/332 (97.59%), Query Frame = 0


Query: 1   MGEEKKNRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPR 60
           MGEEKKN+ IIPSMIKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE  PR
Sbjct: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPHTIENTREVDETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAF 120
           KIP TIENTREVDETVCKPDD+ELFAGNDADEFSSIIKRD+LPKVLITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRKDIKNHGNPT H+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKDIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFE KENKKEAD+K KSKDTKGEKV QQKV+ARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of Tan0014964 vs. ExPASy TrEMBL
Match: A0A5A7UHC7 (Ribosome production factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006030 PE=4 SV=1)

HSP 1 Score: 628.6 bits (1620), Expect = 1.4e-176
Identity = 316/332 (95.18%), Postives = 324/332 (97.59%), Query Frame = 0


Query: 1   MGEEKKNRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPR 60
           MGEEKKN+ IIPSMIKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE  PR
Sbjct: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPHTIENTREVDETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAF 120
           KIP TIENTREVDETVCKPDD+ELFAGNDADEFSSIIKRD+LPKVLITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRKDIKNHGNPT H+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKDIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFE KENKKEAD+K KSKDTKGEKV QQKV+ARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of Tan0014964 vs. ExPASy TrEMBL
Match: A0A0A0LH42 (Brix domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G814330 PE=4 SV=1)

HSP 1 Score: 620.2 bits (1598), Expect = 5.2e-174
Identity = 310/332 (93.37%), Postives = 322/332 (96.99%), Query Frame = 0


Query: 1   MGEEKKNRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPR 60
           MGEEKKN+ I+PS IKNKEKRAEVHANLK+QK+LEKRKRAKARDAAEKQALELGEE  PR
Sbjct: 1   MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPHTIENTREVDETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAF 120
           KIP TIENTREVDETVCKPDD+ELFAGNDADEFSSIIKRD+LPK+LITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRK+IKNHGNPT H+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFE KENKKEAD+K KSK TKGEKV QQKV+ARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of Tan0014964 vs. ExPASy TrEMBL
Match: A0A6J1I6C8 (ribosome production factor 1 OS=Cucurbita maxima OX=3661 GN=LOC111470043 PE=4 SV=1)

HSP 1 Score: 619.4 bits (1596), Expect = 8.8e-174
Identity = 310/332 (93.37%), Postives = 323/332 (97.29%), Query Frame = 0


Query: 1   MGEEKKNRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPR 60
           MGEEKKNRD+IPSMIKNKEKRAEVHANLKNQK+LEKRKRAKARDAAEKQALELGEEP PR
Sbjct: 1   MGEEKKNRDLIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR 60

Query: 61  KIPHTIENTREVDETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAF 120
           K P TIENTREVDETVCKPDD+ELFAGNDADEFSSIIKRD++PKVLITTCRFNS+IGP F
Sbjct: 61  KTPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDIVPKVLITTCRFNSSIGPDF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKIIEYANA+DFTSL+VVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANARDFTSLIVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRKDIKNHGNPT HEPELVLTNFTTRLGLR+GRLIQ+LFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKDIKNHGNPTGHEPELVLTNFTTRLGLRIGRLIQTLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFEGKENKKE D+K+KSKD KGEK SQ KVVARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFEGKENKKEVDSKTKSKD-KGEKASQPKVVARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFD+KGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL 331

[Close]

BLAST of Tan0014964 vs. ExPASy TrEMBL
Match: A0A6J1DPH5 (ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111023106 PE=4 SV=1)

HSP 1 Score: 619.0 bits (1595), Expect = 1.1e-173
Identity = 313/333 (93.99%), Postives = 321/333 (96.40%), Query Frame = 0


Query: 1   MGEEKKN-RDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLP 60
           MGEEKKN RDIIPSMIKNKEKR EVHANLK QK+LEKRKRAKARDA+EKQALELGEEP P
Sbjct: 1   MGEEKKNKRDIIPSMIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPP 60

Query: 61  RKIPHTIENTREVDETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPA 120
           R IP TIENTREVDETVCKPDD+ELFAGNDADEFSSIIKR  LPKVLITTCRFNSTIGP+
Sbjct: 61  RMIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSTIGPS 120

Query: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180
           FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 181 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240
           AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 241 TFHNQRDFIFFRHHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMK 300
           TFHNQRDFIFFRHHRYIF+ KENKKEAD+KS SKD KGEKV +QKV+ARLQECGPRFTMK
Sbjct: 241 TFHNQRDFIFFRHHRYIFDSKENKKEADSKSNSKDAKGEKVPKQKVIARLQECGPRFTMK 300

Query: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333

[Close]

BLAST of Tan0014964 vs. TAIR 10
Match: AT4G01560.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 485.0 bits (1247), Expect = 5.0e-137
Identity = 240/331 (72.51%), Postives = 283/331 (85.50%), Query Frame = 0


Query: 2   GEEKKNRDIIPSMIKNKEKRAEVHANLKNQKRLEKRKRAKARDAAEKQALELGEEPLPRK 61
           G EK+N  I+PSMIKNK+KR++V+A  K++K+LEK+K+ +ARDAAEK+ALELGEEP  + 
Sbjct: 27  GGEKRN-VILPSMIKNKDKRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKM 86

Query: 62  IPHTIENTREVDETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLITTCRFNSTIGPAFI 121
           IP TIENTRE DETVC+PDD+ELFA  DADEF+ +++R++ PKVL+TTCRFNST GPA I
Sbjct: 87  IPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALI 146

Query: 122 SELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAH 181
           SELLSVIPN+HY KRGT DLKKI+EYA  KDFTSL+VVHT+RR+ D LLIIGLP GPTAH
Sbjct: 147 SELLSVIPNSHYQKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTAH 206

Query: 182 FKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVTF 241
           FK+SN+VLRKDIKNHGNPTSH+PELVL NFTTRLG RVGR  QSLFP DPNFRGRRVVTF
Sbjct: 207 FKLSNLVLRKDIKNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRGRRVVTF 266

Query: 242 HNQRDFIFFRHHRYIFEGKENKKEADTKSKSKDTKGEKVSQQKVVARLQECGPRFTMKLI 301
           HNQRDFIFFRHHRYIFE             +K++K +K  ++ +  RLQECGPRFT+KL+
Sbjct: 267 HNQRDFIFFRHHRYIFE-------------TKESKSDKGKEETIKPRLQECGPRFTLKLV 326

Query: 302 SLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           +LQHGTFD+KGGE+EWVHKPEMDTSRRRFFL
Sbjct: 327 TLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 343

[Close]

BLAST of Tan0014964 vs. TAIR 10
Match: AT1G63780.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 158.7 bits (400), Expect = 8.2e-39
Identity = 102/288 (35.42%), Postives = 156/288 (54.17%), Query Frame = 0


Query: 48  KQALELGEEPLPRKIPHTIENTREVDETVCKPDDKELFAGNDADEFSSIIKRDMLPKVLI 107
           ++AL+ G +P+P ++ +     R+  E   +  +  +   +  DE+++  + D  PK+L+
Sbjct: 33  REALQEG-KPIPTELRNVEAKLRQ--EIDLEDQNTAVPRSHIDDEYANATEAD--PKILL 92

Query: 108 TTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLD 167
           TT R  S     F  EL  V PN+    RG+  + +IIE A + DFT +++VH  R   D
Sbjct: 93  TTSRNPSAPLIRFTKELKFVFPNSQRINRGSQVISEIIETARSHDFTDVILVHEHRGVPD 152

Query: 168 GLLIIGLPEGPTAHFKISNVVLRKDI---KNHGNPTSHEPELVLTNFTTRLGLRVGRLIQ 227
           GL+I  LP GPTA+F + NVV R DI   K+ G      P L+  NFTT++G RVG +++
Sbjct: 153 GLIISHLPFGPTAYFGLLNVVTRHDISDKKSIGKMPEQYPHLIFNNFTTQMGQRVGNILK 212

Query: 228 SLFPQDPNFRGRRVVTFHNQRDFIFFRHHRYIFEGKENKKEADTKSKSKDTKGEKVSQQK 287
            +FP  P    +R+VTF NQ D+I FR+H Y      +K E   KS              
Sbjct: 213 HIFPA-PKLDAKRIVTFSNQSDYISFRNHVY------DKGEGGPKS-------------- 272

Query: 288 VVARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
               L+E GPRF ++L  ++ GT +    E EWV +P M+TS++R F+
Sbjct: 273 --IELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFI 292

The following BLAST results are available for this feature:

BLAST of Tan0014964 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8AVP1	2.1e-71	47.85	Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1	[more]
Q5R631	3.5e-71	48.45	Ribosome production factor 1 OS=Pongo abelii OX=9601 GN=RPF1 PE=2 SV=1	[more]
Q9H9Y2	7.9e-71	48.14	Ribosome production factor 1 OS=Homo sapiens OX=9606 GN=RPF1 PE=1 SV=2	[more]
Q7TND5	7.9e-71	48.14	Ribosome production factor 1 OS=Mus musculus OX=10090 GN=Rpf1 PE=2 SV=2	[more]
Q6IQU6	5.1e-70	48.45	Ribosome production factor 1 OS=Danio rerio OX=7955 GN=rpf1 PE=2 SV=1	[more]

BLAST of Tan0014964 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443155.1	3.0e-176	95.18	PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_008443156....	[more]
XP_038906205.1	2.5e-175	94.28	ribosome production factor 1 [Benincasa hispida]	[more]
XP_031737500.1	1.1e-173	93.37	ribosome production factor 1 [Cucumis sativus] >KGN59366.1 hypothetical protein ...	[more]
XP_022971273.1	1.8e-173	93.37	ribosome production factor 1 [Cucurbita maxima] >XP_023539259.1 ribosome product...	[more]
XP_022943997.1	2.4e-173	93.07	ribosome production factor 1 [Cucurbita moschata]	[more]

BLAST of Tan0014964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B854	1.4e-176	95.18	ribosome production factor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486828 ...	[more]
A0A5A7UHC7	1.4e-176	95.18	Ribosome production factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LH42	5.2e-174	93.37	Brix domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G814330 PE=4 S...	[more]
A0A6J1I6C8	8.8e-174	93.37	ribosome production factor 1 OS=Cucurbita maxima OX=3661 GN=LOC111470043 PE=4 SV...	[more]
A0A6J1DPH5	1.1e-173	93.99	ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111023106...	[more]

BLAST of Tan0014964 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01560.1	5.0e-137	72.51	Ribosomal RNA processing Brix domain protein	[more]
AT1G63780.1	8.2e-39	35.42	Ribosomal RNA processing Brix domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 25..45
None	No IPR available	GENE3D	3.40.50.10480		coord: 103..299 e-value: 4.0E-37 score: 129.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..281
None	No IPR available	PANTHER	PTHR22734:SF3	RIBOSOME PRODUCTION FACTOR 1	coord: 1..332
None	No IPR available	SUPERFAMILY	52954	Class II aaRS ABD-related	coord: 103..306
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 106..303 e-value: 1.6E-55 score: 200.5
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 119..301 e-value: 1.7E-32 score: 113.1
IPR007109	Brix domain	PROSITE	PS50833	BRIX	coord: 103..309 score: 41.354671
IPR044281	U3 snoRNP protein/Ribosome production factor 1	PANTHER	PTHR22734	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	coord: 1..332

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0014964.1	Tan0014964.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0042134	rRNA primary transcript binding
molecular_function	GO:0019843	rRNA binding