Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCCATAAATATATGGGTTTATGATAAACTACATAAGAAGAAGCGTCGGGTGACTCTCAGAGTATCTTCTGATAAGAGAGATCGTAGGAAGACAGCAATCTCTACCTTCGTCAACTTCATCCATCAGAGGGATGCCTCTATAGCAATGAAAGTCGTTGAATTAATGCTTGATCATGGAGCACCCATATACACTGTACACGACAACTTTATAACAACAGCATCATATAGCAATTTTCTTCCTGATTATTATAGCAGCACCATTTGCGAGATGGGTCCTCCACTTCAAATCCTCAACGAGTTCATCCATATGAATGTTATTCAACCAATAGTGGGTGGACGCCCTGAGTCCCACTTTACCTGTAATGGTTTCTCATTAAATATGCTTCATTCATACTTAATGGCAAATATACCATCGGGAAAGATAAGCAGATGATGGCTACTTGGAATGAAAAAATCACAGGTATCGTGACCTCTTACGAGAAGTATATTCGTTATGTATGCGGGGATTCTAATCCTTCTTGGGAAGCTCATGTGAAAAAGTGGGATAACTTCCACTTTTCGGCAAAAATCCTTGAATTTGAGTTTCCTCCCGTATTGGTCTGCTCTACTGCAGCTTGTATCATTGCCTCAATCTCCATCTTTCCGAGAGGCTTCCCCATGGGGACCACTGAGCGATCATAGTATAACTCTTCCATAGGAGATTCATAAGCGAATCGCTTTCGAGGCCTCTCGGATTGCCCATTCATGAAATAAGGTGCAGGAGTTCTTTGCATCCGTAGAGGAGGCTCATCCATGATTGGGAATCGGAATGTGGGTACTTGACTGGATGCCCGCCCCCCCCATTGATCTTGGCTTGCTTCATTGCATTCATTCATTCTTTGTTTGATTCTTCGGGCTTCTTCCGATCCGCTTGA
mRNA sequence
ATGGAACCCATAAATATATGGGTTTATGATAAACTACATAAGAAGAAGCGTCGGGTGACTCTCAGAGTATCTTCTGATAAGAGAGATCGTAGGAAGACAGCAATCTCTACCTTCGTCAACTTCATCCATCAGAGGGATGCCTCTATAGCAATGAAAGTCGTTGAATTAATGCTTGATCATGGAGCACCCATATACACTGTACACGACAACTTTATAACAACAGCATCATATAGCAATTTTCTTCCTGATTATTATAGCAGCACCATTTGCGAGATGGGTCCTCCACTTCAAATCCTCAACGAGTTCATCCATATGAATAGGAGGCTCATCCATGATTGGGAATCGGAATGTGGGTACTTGACTGGATGCCCGCCCCCCCCATTGATCTTGGCTTGCTTCATTGCATTCATTCATTCTTTGTTTGATTCTTCGGGCTTCTTCCGATCCGCTTGA
Coding sequence (CDS)
ATGGAACCCATAAATATATGGGTTTATGATAAACTACATAAGAAGAAGCGTCGGGTGACTCTCAGAGTATCTTCTGATAAGAGAGATCGTAGGAAGACAGCAATCTCTACCTTCGTCAACTTCATCCATCAGAGGGATGCCTCTATAGCAATGAAAGTCGTTGAATTAATGCTTGATCATGGAGCACCCATATACACTGTACACGACAACTTTATAACAACAGCATCATATAGCAATTTTCTTCCTGATTATTATAGCAGCACCATTTGCGAGATGGGTCCTCCACTTCAAATCCTCAACGAGTTCATCCATATGAATAGGAGGCTCATCCATGATTGGGAATCGGAATGTGGGTACTTGACTGGATGCCCGCCCCCCCCATTGATCTTGGCTTGCTTCATTGCATTCATTCATTCTTTGTTTGATTCTTCGGGCTTCTTCCGATCCGCTTGA
Protein sequence
MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMNRRLIHDWESECGYLTGCPPPPLILACFIAFIHSLFDSSGFFRSA
Homology
BLAST of Tan0013514 vs. ExPASy Swiss-Prot
Match:
P10581 (Probable DNA-directed RNA polymerase OS=Zea mays OX=4577 PE=3 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 2.2e-12
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 0
Query: 15 KKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELM--LDHGA--PIYTVHDN 74
K + + + D RK++ STF NFIHQ+DA A+++V+ + L++ + PIY VHDN
Sbjct: 857 KTTSAKMLIPLNDNDIRKSSTSTFANFIHQKDAFTAIQLVDFINKLENASSIPIYAVHDN 916
Query: 75 FITTASYSNFLPDYYSSTICEMGPPLQILNEFI 104
FIT Y++ LP Y +I MG PL I+N+F+
Sbjct: 917 FITMPEYASILPTLYRDSIFRMGHPLIIINKFL 949
BLAST of Tan0013514 vs. NCBI nr
Match:
CAB4289961.1 (unnamed protein product [Prunus armeniaca])
HSP 1 Score: 176.4 bits (446), Expect = 1.8e-40
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 0
Query: 1 MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+
Sbjct: 709 MDPINVWFYDGLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQRDAHIAMKVVECMLEK 768
Query: 61 GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
GAPIYTVHDNFITTA YS FLP Y ICEMGPPL ILNEFI+MN
Sbjct: 769 GAPIYTVHDNFITTAEYSYFLPIIYIKVICEMGPPLSILNEFIYMN 814
BLAST of Tan0013514 vs. NCBI nr
Match:
CAB4293876.1 (unnamed protein product [Prunus armeniaca])
HSP 1 Score: 176.4 bits (446), Expect = 1.8e-40
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 0
Query: 1 MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+
Sbjct: 687 MDPINVWFYDGLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQRDAHIAMKVVECMLEK 746
Query: 61 GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
GAPIYTVHDNFITTA YS FLP Y ICEMGPPL ILNEFI+MN
Sbjct: 747 GAPIYTVHDNFITTAEYSYFLPIIYIKVICEMGPPLSILNEFIYMN 792
BLAST of Tan0013514 vs. NCBI nr
Match:
CAB4263363.1 (unnamed protein product [Prunus armeniaca] >CAB4320324.1 unnamed protein product [Prunus armeniaca])
HSP 1 Score: 176.4 bits (446), Expect = 1.8e-40
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 0
Query: 1 MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+
Sbjct: 709 MDPINVWFYDGLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQRDAHIAMKVVECMLEK 768
Query: 61 GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
GAPIYTVHDNFITTA YS FLP Y ICEMGPPL ILNEFI+MN
Sbjct: 769 GAPIYTVHDNFITTAEYSYFLPIIYIKVICEMGPPLSILNEFIYMN 814
BLAST of Tan0013514 vs. NCBI nr
Match:
KAG6621672.1 (hypothetical protein I3842_Q008800, partial [Carya illinoinensis])
HSP 1 Score: 172.6 bits (436), Expect = 2.7e-39
Identity = 83/106 (78.30%), Postives = 92/106 (86.79%), Query Frame = 0
Query: 1 MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
M+PINIWVYD+LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML++
Sbjct: 705 MDPINIWVYDRLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQRDAHIAMKVVEAMLEN 764
Query: 61 GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
PIYTVHDNFITTA YSN +P YS I +MGPPL I+NEFI+MN
Sbjct: 765 SLPIYTVHDNFITTAEYSNLIPTIYSMVIRDMGPPLSIVNEFIYMN 810
BLAST of Tan0013514 vs. NCBI nr
Match:
XP_017985382.1 (PREDICTED: probable DNA-directed RNA polymerase [Theobroma cacao])
HSP 1 Score: 169.9 bits (429), Expect = 1.7e-38
Identity = 81/106 (76.42%), Postives = 91/106 (85.85%), Query Frame = 0
Query: 1 MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
MEPINIWVYD+LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQ+DA IAM VVE ML
Sbjct: 664 MEPINIWVYDRLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQKDAHIAMCVVEQMLSI 723
Query: 61 GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
GAPIYTVHDNFI+TA YS+ +P YS+ IC M PPL ++NEFI+MN
Sbjct: 724 GAPIYTVHDNFISTAQYSDLIPSIYSNVICNMDPPLSVINEFIYMN 769
BLAST of Tan0013514 vs. ExPASy TrEMBL
Match:
A0A6J5Y9W3 (DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS3511 PE=3 SV=1)
HSP 1 Score: 176.4 bits (446), Expect = 8.9e-41
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 0
Query: 1 MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+
Sbjct: 709 MDPINVWFYDGLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQRDAHIAMKVVECMLEK 768
Query: 61 GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
GAPIYTVHDNFITTA YS FLP Y ICEMGPPL ILNEFI+MN
Sbjct: 769 GAPIYTVHDNFITTAEYSYFLPIIYIKVICEMGPPLSILNEFIYMN 814
BLAST of Tan0013514 vs. ExPASy TrEMBL
Match:
A0A6J5VXK4 (DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS3296 PE=3 SV=1)
HSP 1 Score: 176.4 bits (446), Expect = 8.9e-41
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 0
Query: 1 MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+
Sbjct: 687 MDPINVWFYDGLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQRDAHIAMKVVECMLEK 746
Query: 61 GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
GAPIYTVHDNFITTA YS FLP Y ICEMGPPL ILNEFI+MN
Sbjct: 747 GAPIYTVHDNFITTAEYSYFLPIIYIKVICEMGPPLSILNEFIYMN 792
BLAST of Tan0013514 vs. ExPASy TrEMBL
Match:
A0A6J5VPQ6 (Multifunctional fusion protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49732 PE=3 SV=1)
HSP 1 Score: 176.4 bits (446), Expect = 8.9e-41
Identity = 86/106 (81.13%), Postives = 91/106 (85.85%), Query Frame = 0
Query: 1 MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+
Sbjct: 709 MDPINVWFYDGLHKKRRRVTLRVSSSKRDRRKTEISTFVNFIHQRDAHIAMKVVECMLEK 768
Query: 61 GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
GAPIYTVHDNFITTA YS FLP Y ICEMGPPL ILNEFI+MN
Sbjct: 769 GAPIYTVHDNFITTAEYSYFLPIIYIKVICEMGPPLSILNEFIYMN 814
BLAST of Tan0013514 vs. ExPASy TrEMBL
Match:
A0A101M3N5 (DNA-directed RNA polymerase OS=Picea glauca OX=3330 GN=rpo PE=3 SV=1)
HSP 1 Score: 168.3 bits (425), Expect = 2.4e-38
Identity = 83/106 (78.30%), Postives = 89/106 (83.96%), Query Frame = 0
Query: 1 MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
M PINIW YD LHKK+ RVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+
Sbjct: 571 MVPINIWFYDGLHKKRHRVTLRVSSSKRDRRKTDISTFVNFIHQRDAHIAMKVVERMLEK 630
Query: 61 GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
GAPIYTVHDNFITTA Y++ LP Y IC+MGPPL ILNEFI+MN
Sbjct: 631 GAPIYTVHDNFITTAEYTHDLPRIYIKVICDMGPPLSILNEFIYMN 676
BLAST of Tan0013514 vs. ExPASy TrEMBL
Match:
A0A6B9XVF7 (DNA-directed RNA polymerase OS=Picea sitchensis OX=3332 GN=ymfrpo PE=3 SV=1)
HSP 1 Score: 168.3 bits (425), Expect = 2.4e-38
Identity = 83/106 (78.30%), Postives = 89/106 (83.96%), Query Frame = 0
Query: 1 MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDH 60
M PINIW YD LHKK+ RVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+
Sbjct: 571 MVPINIWFYDGLHKKRHRVTLRVSSSKRDRRKTDISTFVNFIHQRDAHIAMKVVERMLEK 630
Query: 61 GAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMN 107
GAPIYTVHDNFITTA Y++ LP Y IC+MGPPL ILNEFI+MN
Sbjct: 631 GAPIYTVHDNFITTAEYTHDLPRIYIKVICDMGPPLSILNEFIYMN 676
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| P10581 | 2.2e-12 | 41.94 | Probable DNA-directed RNA polymerase OS=Zea mays OX=4577 PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| CAB4289961.1 | 1.8e-40 | 81.13 | unnamed protein product [Prunus armeniaca] | [more] |
| CAB4293876.1 | 1.8e-40 | 81.13 | unnamed protein product [Prunus armeniaca] | [more] |
| CAB4263363.1 | 1.8e-40 | 81.13 | unnamed protein product [Prunus armeniaca] >CAB4320324.1 unnamed protein product... | [more] |
| KAG6621672.1 | 2.7e-39 | 78.30 | hypothetical protein I3842_Q008800, partial [Carya illinoinensis] | [more] |
| XP_017985382.1 | 1.7e-38 | 76.42 | PREDICTED: probable DNA-directed RNA polymerase [Theobroma cacao] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J5Y9W3 | 8.9e-41 | 81.13 | DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS3511 PE=... | [more] |
| A0A6J5VXK4 | 8.9e-41 | 81.13 | DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS3296 ... | [more] |
| A0A6J5VPQ6 | 8.9e-41 | 81.13 | Multifunctional fusion protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49732... | [more] |
| A0A101M3N5 | 2.4e-38 | 78.30 | DNA-directed RNA polymerase OS=Picea glauca OX=3330 GN=rpo PE=3 SV=1 | [more] |
| A0A6B9XVF7 | 2.4e-38 | 78.30 | DNA-directed RNA polymerase OS=Picea sitchensis OX=3332 GN=ymfrpo PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
