Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCGCTTGGACACATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTGTGGGTATTATTTTTTTAAATGGAGATACTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGTCTTATTTTGA
mRNA sequence
ATGGCAAGCGCTTGGACACATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTGTGGGTATTATTTTTTTAAATGGAGATACTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGTCTTATTTTGA
Coding sequence (CDS)
ATGGCAAGCGCTTGGACACATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTGTGGGTATTATTTTTTTAAATGGAGATACTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGTCTTATTTTGA
Protein sequence
MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF
Homology
BLAST of Tan0011140 vs. NCBI nr
Match:
KGN49818.1 (hypothetical protein Csa_000599 [Cucumis sativus])
HSP 1 Score: 185.7 bits (470), Expect = 2.0e-43
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0
Query: 1 MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYF 60
M SA T+MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYF
Sbjct: 1 MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF 60
Query: 61 NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF 100
NIIIPLEHLGANEQWNCGARLTSRIALLVCFIV+ S LF
Sbjct: 61 NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALF 99
BLAST of Tan0011140 vs. NCBI nr
Match:
TYK05915.1 (Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa])
HSP 1 Score: 165.2 bits (417), Expect = 2.8e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0
Query: 8 MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLE 67
MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYFNIIIPLE
Sbjct: 1 MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60
Query: 68 HLGANEQWNCGARLTSRIALL 89
HLGANEQWNCGARLTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81
BLAST of Tan0011140 vs. NCBI nr
Match:
KAA0042513.1 (Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa])
HSP 1 Score: 165.2 bits (417), Expect = 2.8e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0
Query: 8 MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLE 67
MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYFNIIIPLE
Sbjct: 1 MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60
Query: 68 HLGANEQWNCGARLTSRIALL 89
HLGANEQWNCGARLTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81
BLAST of Tan0011140 vs. NCBI nr
Match:
PON83659.1 (hypothetical protein TorRG33x02_204650, partial [Trema orientale])
HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 0
Query: 1 MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCT-AKILERMRRYKIY 60
MASAWT+MSIA+IHRDIER+WE CGV+G+IFL + + S+++ T AKILERMRR K
Sbjct: 61 MASAWTNMSIAMIHRDIERDWEIQCGVMGVIFLLLEILAHSQKIYTNAKILERMRRSKFI 120
Query: 61 FNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF 100
++ L CGARLTSRIALLVCF+V + F
Sbjct: 121 SIYLLLWSILEQMSNGACGARLTSRIALLVCFMVLVLLYF 160
BLAST of Tan0011140 vs. NCBI nr
Match:
KCW89084.1 (hypothetical protein EUGRSUZ_A01413, partial [Eucalyptus grandis])
HSP 1 Score: 91.3 bits (225), Expect = 5.1e-15
Identity = 49/99 (49.49%), Postives = 58/99 (58.59%), Query Frame = 0
Query: 1 MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYF 60
M SAWT+MS A+I RD+EREWEN GV+GI N SL E+L + K F
Sbjct: 131 MTSAWTNMSFAVIRRDLEREWENQGGVMGIFLNNWRPWSLPEDLYICENSGEDVEIKFVF 190
Query: 61 NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF 100
I LEHLGANEQW+ + IALLVCFIV + F
Sbjct: 191 EFNIALEHLGANEQWSLWSMAHRGIALLVCFIVLVFLYF 229
BLAST of Tan0011140 vs. ExPASy TrEMBL
Match:
A0A0A0KJQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138500 PE=4 SV=1)
HSP 1 Score: 185.7 bits (470), Expect = 9.7e-44
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0
Query: 1 MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYF 60
M SA T+MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYF
Sbjct: 1 MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF 60
Query: 61 NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF 100
NIIIPLEHLGANEQWNCGARLTSRIALLVCFIV+ S LF
Sbjct: 61 NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALF 99
BLAST of Tan0011140 vs. ExPASy TrEMBL
Match:
A0A5A7TGZ1 (Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00050 PE=4 SV=1)
HSP 1 Score: 165.2 bits (417), Expect = 1.4e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0
Query: 8 MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLE 67
MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYFNIIIPLE
Sbjct: 1 MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60
Query: 68 HLGANEQWNCGARLTSRIALL 89
HLGANEQWNCGARLTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81
BLAST of Tan0011140 vs. ExPASy TrEMBL
Match:
A0A5D3C3G3 (Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00060 PE=4 SV=1)
HSP 1 Score: 165.2 bits (417), Expect = 1.4e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0
Query: 8 MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLE 67
MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYFNIIIPLE
Sbjct: 1 MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60
Query: 68 HLGANEQWNCGARLTSRIALL 89
HLGANEQWNCGARLTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81
BLAST of Tan0011140 vs. ExPASy TrEMBL
Match:
A0A2P5EDP3 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_204650 PE=4 SV=1)
HSP 1 Score: 102.8 bits (255), Expect = 8.2e-19
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 0
Query: 1 MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCT-AKILERMRRYKIY 60
MASAWT+MSIA+IHRDIER+WE CGV+G+IFL + + S+++ T AKILERMRR K
Sbjct: 61 MASAWTNMSIAMIHRDIERDWEIQCGVMGVIFLLLEILAHSQKIYTNAKILERMRRSKFI 120
Query: 61 FNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF 100
++ L CGARLTSRIALLVCF+V + F
Sbjct: 121 SIYLLLWSILEQMSNGACGARLTSRIALLVCFMVLVLLYF 160
BLAST of Tan0011140 vs. ExPASy TrEMBL
Match:
A0A2P5DF99 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_068170 PE=4 SV=1)
HSP 1 Score: 91.3 bits (225), Expect = 2.5e-15
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 0
Query: 1 MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCT-AKILERMRRYKIY 60
M SAWT+MSIA+IHRDIER+WE CGV+G+IFL + + S+++ T AKILERMRR K
Sbjct: 61 MTSAWTNMSIAMIHRDIERDWEIQCGVMGVIFLLLEILAHSQKIYTSAKILERMRRSKFI 120
Query: 61 FNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF 100
++ L GA LT RIALLVCF+V + F
Sbjct: 121 SIYLLLWSILEQMSNGAFGAWLTWRIALLVCFMVLVLLYF 160
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KGN49818.1 | 2.0e-43 | 88.89 | hypothetical protein Csa_000599 [Cucumis sativus] | [more] |
TYK05915.1 | 2.8e-37 | 93.83 | Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa] | [more] |
KAA0042513.1 | 2.8e-37 | 93.83 | Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa] | [more] |
PON83659.1 | 1.7e-18 | 56.00 | hypothetical protein TorRG33x02_204650, partial [Trema orientale] | [more] |
KCW89084.1 | 5.1e-15 | 49.49 | hypothetical protein EUGRSUZ_A01413, partial [Eucalyptus grandis] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KJQ0 | 9.7e-44 | 88.89 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138500 PE=4 SV=1 | [more] |
A0A5A7TGZ1 | 1.4e-37 | 93.83 | Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... | [more] |
A0A5D3C3G3 | 1.4e-37 | 93.83 | Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
A0A2P5EDP3 | 8.2e-19 | 56.00 | Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_204... | [more] |
A0A2P5DF99 | 2.5e-15 | 52.00 | Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... | [more] |
Match Name | E-value | Identity | Description | |