Tan0011140 (gene) Snake gourd v1

Overview


Name	Tan0011140
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Pre-mRNA-splicing factor SF2
Location	LG07: 9013129 .. 9013428 (+)
RNA-Seq Expression	Tan0011140
Synteny	Tan0011140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCGCTTGGACACATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTGTGGGTATTATTTTTTTAAATGGAGATACTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGTCTTATTTTGA

mRNA sequence

ATGGCAAGCGCTTGGACACATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTGTGGGTATTATTTTTTTAAATGGAGATACTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGTCTTATTTTGA

Coding sequence (CDS)

ATGGCAAGCGCTTGGACACATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTGTGGGTATTATTTTTTTAAATGGAGATACTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGTCTTATTTTGA

Protein sequence

MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF

Homology

[Close]

BLAST of Tan0011140 vs. NCBI nr
Match: KGN49818.1 (hypothetical protein Csa_000599 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 2.0e-43
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYF 60
           M SA T+MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYF
Sbjct: 1   MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF 60

Query: 61  NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF 100
           NIIIPLEHLGANEQWNCGARLTSRIALLVCFIV+ S LF
Sbjct: 61  NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALF 99

[Close]

BLAST of Tan0011140 vs. NCBI nr
Match: TYK05915.1 (Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 2.8e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 8  MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLE 67
          MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYFNIIIPLE
Sbjct: 1  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60

Query: 68 HLGANEQWNCGARLTSRIALL 89
          HLGANEQWNCGARLTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81

[Close]

BLAST of Tan0011140 vs. NCBI nr
Match: KAA0042513.1 (Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 2.8e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 8  MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLE 67
          MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYFNIIIPLE
Sbjct: 1  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60

Query: 68 HLGANEQWNCGARLTSRIALL 89
          HLGANEQWNCGARLTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81

[Close]

BLAST of Tan0011140 vs. NCBI nr
Match: PON83659.1 (hypothetical protein TorRG33x02_204650, partial [Trema orientale])

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 1   MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCT-AKILERMRRYKIY 60
           MASAWT+MSIA+IHRDIER+WE  CGV+G+IFL  +  + S+++ T AKILERMRR K  
Sbjct: 61  MASAWTNMSIAMIHRDIERDWEIQCGVMGVIFLLLEILAHSQKIYTNAKILERMRRSKFI 120

Query: 61  FNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF 100
              ++    L       CGARLTSRIALLVCF+V   + F
Sbjct: 121 SIYLLLWSILEQMSNGACGARLTSRIALLVCFMVLVLLYF 160

[Close]

BLAST of Tan0011140 vs. NCBI nr
Match: KCW89084.1 (hypothetical protein EUGRSUZ_A01413, partial [Eucalyptus grandis])

HSP 1 Score: 91.3 bits (225), Expect = 5.1e-15
Identity = 49/99 (49.49%), Postives = 58/99 (58.59%), Query Frame = 0


Query: 1   MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYF 60
           M SAWT+MS A+I RD+EREWEN  GV+GI   N    SL E+L   +        K  F
Sbjct: 131 MTSAWTNMSFAVIRRDLEREWENQGGVMGIFLNNWRPWSLPEDLYICENSGEDVEIKFVF 190

Query: 61  NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF 100
              I LEHLGANEQW+  +     IALLVCFIV   + F
Sbjct: 191 EFNIALEHLGANEQWSLWSMAHRGIALLVCFIVLVFLYF 229

[Close]

BLAST of Tan0011140 vs. ExPASy TrEMBL
Match: A0A0A0KJQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138500 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.7e-44
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYF 60
           M SA T+MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYF
Sbjct: 1   MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF 60

Query: 61  NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF 100
           NIIIPLEHLGANEQWNCGARLTSRIALLVCFIV+ S LF
Sbjct: 61  NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALF 99

[Close]

BLAST of Tan0011140 vs. ExPASy TrEMBL
Match: A0A5A7TGZ1 (Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00050 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.4e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 8  MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLE 67
          MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYFNIIIPLE
Sbjct: 1  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60

Query: 68 HLGANEQWNCGARLTSRIALL 89
          HLGANEQWNCGARLTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81

[Close]

BLAST of Tan0011140 vs. ExPASy TrEMBL
Match: A0A5D3C3G3 (Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00060 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.4e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 8  MSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCTAKILERMRRYKIYFNIIIPLE 67
          MSIAIIHRDIEREWE+HCGV+GIIF+NG TCSLSEELCTAK LERMRRYKIYFNIIIPLE
Sbjct: 1  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60

Query: 68 HLGANEQWNCGARLTSRIALL 89
          HLGANEQWNCGARLTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81

[Close]

BLAST of Tan0011140 vs. ExPASy TrEMBL
Match: A0A2P5EDP3 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_204650 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.2e-19
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 1   MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCT-AKILERMRRYKIY 60
           MASAWT+MSIA+IHRDIER+WE  CGV+G+IFL  +  + S+++ T AKILERMRR K  
Sbjct: 61  MASAWTNMSIAMIHRDIERDWEIQCGVMGVIFLLLEILAHSQKIYTNAKILERMRRSKFI 120

Query: 61  FNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF 100
              ++    L       CGARLTSRIALLVCF+V   + F
Sbjct: 121 SIYLLLWSILEQMSNGACGARLTSRIALLVCFMVLVLLYF 160

[Close]

BLAST of Tan0011140 vs. ExPASy TrEMBL
Match: A0A2P5DF99 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_068170 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.5e-15
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 1   MASAWTHMSIAIIHRDIEREWENHCGVVGIIFLNGDTCSLSEELCT-AKILERMRRYKIY 60
           M SAWT+MSIA+IHRDIER+WE  CGV+G+IFL  +  + S+++ T AKILERMRR K  
Sbjct: 61  MTSAWTNMSIAMIHRDIERDWEIQCGVMGVIFLLLEILAHSQKIYTSAKILERMRRSKFI 120

Query: 61  FNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVFGSVLF 100
              ++    L        GA LT RIALLVCF+V   + F
Sbjct: 121 SIYLLLWSILEQMSNGAFGAWLTWRIALLVCFMVLVLLYF 160

The following BLAST results are available for this feature:

BLAST of Tan0011140 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0011140 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49818.1	2.0e-43	88.89	hypothetical protein Csa_000599 [Cucumis sativus]	[more]
TYK05915.1	2.8e-37	93.83	Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]	[more]
KAA0042513.1	2.8e-37	93.83	Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]	[more]
PON83659.1	1.7e-18	56.00	hypothetical protein TorRG33x02_204650, partial [Trema orientale]	[more]
KCW89084.1	5.1e-15	49.49	hypothetical protein EUGRSUZ_A01413, partial [Eucalyptus grandis]	[more]

BLAST of Tan0011140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJQ0	9.7e-44	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138500 PE=4 SV=1	[more]
A0A5A7TGZ1	1.4e-37	93.83	Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3C3G3	1.4e-37	93.83	Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A2P5EDP3	8.2e-19	56.00	Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_204...	[more]
A0A2P5DF99	2.5e-15	52.00	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]

BLAST of Tan0011140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0011140.1	Tan0011140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding