Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGCCATAGAATTTTCTCAGTTTTTCTCCTTTCATGCTTTCTCCTTCTCTTTCTCTCTCCTGGTACTCCAATTCTTTCTTATCTAATTTCTTTTCTCTCTTTTTCTTTTTTATTTTCATACCCTCAATTATCTGTTTTGTTGGCTTTTTTTTTTCTTTAAGGATTTGGAGCTGAAGTGATGGTAACTGTGGAACATGGACCTTCTCTTACTCCAAAAAAGGTAATTTAGTACTTTTGATTATCTCTCCAATTGGTCGAAGAAGAAATGTGTGTATATATATGACTTTGACCGTATTTTATTGTATTAATATGTATATTTTGTGTTTTTTTGTTCGATAGGAAAGTGTAGGAAAATCAAAAAATACGATGGTTGATGCGTCGGATTATCGCGATCCAGGACCAAATCGCCCTGTAATGGCTAGGAATCATAGGGTCCCTATTCCTCCTACAAATGCTTAA
mRNA sequence
ATGGGTAGCCATAGAATTTTCTCAGTTTTTCTCCTTTCATGCTTTCTCCTTCTCTTTCTCTCTCCTGGATTTGGAGCTGAAGTGATGGTAACTGTGGAACATGGACCTTCTCTTACTCCAAAAAAGGAAAGTGTAGGAAAATCAAAAAATACGATGGTTGATGCGTCGGATTATCGCGATCCAGGACCAAATCGCCCTGTAATGGCTAGGAATCATAGGGTCCCTATTCCTCCTACAAATGCTTAA
Coding sequence (CDS)
ATGGGTAGCCATAGAATTTTCTCAGTTTTTCTCCTTTCATGCTTTCTCCTTCTCTTTCTCTCTCCTGGATTTGGAGCTGAAGTGATGGTAACTGTGGAACATGGACCTTCTCTTACTCCAAAAAAGGAAAGTGTAGGAAAATCAAAAAATACGATGGTTGATGCGTCGGATTATCGCGATCCAGGACCAAATCGCCCTGTAATGGCTAGGAATCATAGGGTCCCTATTCCTCCTACAAATGCTTAA
Protein sequence
MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTPKKESVGKSKNTMVDASDYRDPGPNRPVMARNHRVPIPPTNA
Homology
BLAST of Tan0010843 vs. NCBI nr
Match:
XP_031741770.1 (probable calcium-binding protein CML47 [Cucumis sativus])
HSP 1 Score: 70.5 bits (171), Expect = 7.7e-09
Identity = 42/84 (50.00%), Postives = 50/84 (59.52%), Query Frame = 0
Query: 1 MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTP--KKESVGKSKNTMVD--AS 60
M RI + L+SCFL LFLSPGFG E M T+E SLTP K+ S GK ++ MVD
Sbjct: 1 MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60
Query: 61 DYRDPGPNRP--VMARNHRVPIPP 79
DY PGPN+P + A N P P
Sbjct: 61 DYHGPGPNKPRSITAPNSATPSSP 84
BLAST of Tan0010843 vs. NCBI nr
Match:
KGN52469.1 (hypothetical protein Csa_008670 [Cucumis sativus])
HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = 0
Query: 1 MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTP--KKESVGKSKNTMVD--AS 60
M RI + L+SCFL LFLSPGFG E M T+E SLTP K+ S GK ++ MVD
Sbjct: 1 MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60
Query: 61 DYRDPGPNRP--VMARNHRVP 76
DY PGPN+P + A N P
Sbjct: 61 DYHGPGPNKPRSITAPNSATP 81
BLAST of Tan0010843 vs. NCBI nr
Match:
XP_022133550.1 (apidaecins type 73-like isoform X2 [Momordica charantia])
HSP 1 Score: 64.3 bits (155), Expect = 5.5e-07
Identity = 40/109 (36.70%), Postives = 51/109 (46.79%), Query Frame = 0
Query: 1 MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTPKKESVGKSKNT--------- 60
M S IFS+ L+S LLLF S GFG +VM + EH S+TP KES+ KS+
Sbjct: 1 MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKESIQKSRKVNEVANYHDP 60
Query: 61 -----------------------MVDASDYRDPGPNRPVMARNHRVPIP 78
M++ DY+DPGPNRP+ N P P
Sbjct: 61 APNHPTMFHPTKILNASPPSLRKMIEVEDYQDPGPNRPIKISNASPPSP 109
BLAST of Tan0010843 vs. NCBI nr
Match:
XP_022133549.1 (apidaecins type 14-like isoform X1 [Momordica charantia])
HSP 1 Score: 60.8 bits (146), Expect = 6.1e-06
Identity = 40/110 (36.36%), Postives = 52/110 (47.27%), Query Frame = 0
Query: 1 MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTP-KKESVGKSKNT-------- 60
M S IFS+ L+S LLLF S GFG +VM + EH S+TP K+ES+ KS+
Sbjct: 1 MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKQESIQKSRKVNEVANYHD 60
Query: 61 ------------------------MVDASDYRDPGPNRPVMARNHRVPIP 78
M++ DY+DPGPNRP+ N P P
Sbjct: 61 PAPNHPTMFHPTKILNASPPSLRKMIEVEDYQDPGPNRPIKISNASPPSP 110
BLAST of Tan0010843 vs. NCBI nr
Match:
XP_022134005.1 (extensin-like isoform X1 [Momordica charantia])
HSP 1 Score: 57.4 bits (137), Expect = 6.7e-05
Identity = 39/93 (41.94%), Postives = 45/93 (48.39%), Query Frame = 0
Query: 1 MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTPKKESVGKS------------ 60
MGS RIF + L S FLLLF S GFG EVM ++EH S+ KESV KS
Sbjct: 1 MGSLRIFPLLLASFFLLLFSSHGFGGEVMGSMEHADSI---KESVRKSMIKGDPRPNCPT 60
Query: 61 -------------KNTMVDASDYRDPGPNRPVM 69
M++ DY DP PNRP M
Sbjct: 61 MFHPTKISDASPPPRKMIEVEDYHDPRPNRPTM 90
BLAST of Tan0010843 vs. ExPASy TrEMBL
Match:
A0A0A0KU89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1)
HSP 1 Score: 69.7 bits (169), Expect = 6.3e-09
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = 0
Query: 1 MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTP--KKESVGKSKNTMVD--AS 60
M RI + L+SCFL LFLSPGFG E M T+E SLTP K+ S GK ++ MVD
Sbjct: 1 MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60
Query: 61 DYRDPGPNRP--VMARNHRVP 76
DY PGPN+P + A N P
Sbjct: 61 DYHGPGPNKPRSITAPNSATP 81
BLAST of Tan0010843 vs. ExPASy TrEMBL
Match:
A0A6J1BVK3 (apidaecins type 73-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006109 PE=4 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 40/109 (36.70%), Postives = 51/109 (46.79%), Query Frame = 0
Query: 1 MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTPKKESVGKSKNT--------- 60
M S IFS+ L+S LLLF S GFG +VM + EH S+TP KES+ KS+
Sbjct: 1 MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKESIQKSRKVNEVANYHDP 60
Query: 61 -----------------------MVDASDYRDPGPNRPVMARNHRVPIP 78
M++ DY+DPGPNRP+ N P P
Sbjct: 61 APNHPTMFHPTKILNASPPSLRKMIEVEDYQDPGPNRPIKISNASPPSP 109
BLAST of Tan0010843 vs. ExPASy TrEMBL
Match:
A0A6J1BWA5 (apidaecins type 14-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006109 PE=4 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 2.9e-06
Identity = 40/110 (36.36%), Postives = 52/110 (47.27%), Query Frame = 0
Query: 1 MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTP-KKESVGKSKNT-------- 60
M S IFS+ L+S LLLF S GFG +VM + EH S+TP K+ES+ KS+
Sbjct: 1 MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKQESIQKSRKVNEVANYHD 60
Query: 61 ------------------------MVDASDYRDPGPNRPVMARNHRVPIP 78
M++ DY+DPGPNRP+ N P P
Sbjct: 61 PAPNHPTMFHPTKILNASPPSLRKMIEVEDYQDPGPNRPIKISNASPPSP 110
BLAST of Tan0010843 vs. ExPASy TrEMBL
Match:
A0A6J1BWU2 (extensin-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006390 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 3.2e-05
Identity = 39/93 (41.94%), Postives = 45/93 (48.39%), Query Frame = 0
Query: 1 MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTPKKESVGKS------------ 60
MGS RIF + L S FLLLF S GFG EVM ++EH S+ KESV KS
Sbjct: 1 MGSLRIFPLLLASFFLLLFSSHGFGGEVMGSMEHADSI---KESVRKSMIKGDPRPNCPT 60
Query: 61 -------------KNTMVDASDYRDPGPNRPVM 69
M++ DY DP PNRP M
Sbjct: 61 MFHPTKISDASPPPRKMIEVEDYHDPRPNRPTM 90
BLAST of Tan0010843 vs. ExPASy TrEMBL
Match:
A0A5N6QY91 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007572 PE=4 SV=1)
HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 0
Query: 1 MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTPKKESVGKSKNTMVDASDYRD 60
MG + LLS L+L S GFG++VM TV+H S +E+VG+S+ M + DY+D
Sbjct: 1 MGRFCFLRILLLSSLLVLCFSHGFGSKVMETVQHEDSGVQVEETVGESRE-MTEVMDYQD 60
Query: 61 PGPN 65
PGPN
Sbjct: 61 PGPN 63
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KU89 | 6.3e-09 | 50.62 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1 | [more] |
A0A6J1BVK3 | 2.7e-07 | 36.70 | apidaecins type 73-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC11100610... | [more] |
A0A6J1BWA5 | 2.9e-06 | 36.36 | apidaecins type 14-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11100610... | [more] |
A0A6J1BWU2 | 3.2e-05 | 41.94 | extensin-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006390 PE=4 SV=... | [more] |
A0A5N6QY91 | 6.1e-04 | 45.31 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007572 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |