Tan0010843 (gene) Snake gourd v1

Overview
NameTan0010843
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionapidaecins type 14-like isoform X1
LocationLG11: 4253558 .. 4254021 (-)
RNA-Seq ExpressionTan0010843
SyntenyTan0010843
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGCCATAGAATTTTCTCAGTTTTTCTCCTTTCATGCTTTCTCCTTCTCTTTCTCTCTCCTGGTACTCCAATTCTTTCTTATCTAATTTCTTTTCTCTCTTTTTCTTTTTTATTTTCATACCCTCAATTATCTGTTTTGTTGGCTTTTTTTTTTCTTTAAGGATTTGGAGCTGAAGTGATGGTAACTGTGGAACATGGACCTTCTCTTACTCCAAAAAAGGTAATTTAGTACTTTTGATTATCTCTCCAATTGGTCGAAGAAGAAATGTGTGTATATATATGACTTTGACCGTATTTTATTGTATTAATATGTATATTTTGTGTTTTTTTGTTCGATAGGAAAGTGTAGGAAAATCAAAAAATACGATGGTTGATGCGTCGGATTATCGCGATCCAGGACCAAATCGCCCTGTAATGGCTAGGAATCATAGGGTCCCTATTCCTCCTACAAATGCTTAA

mRNA sequence

ATGGGTAGCCATAGAATTTTCTCAGTTTTTCTCCTTTCATGCTTTCTCCTTCTCTTTCTCTCTCCTGGATTTGGAGCTGAAGTGATGGTAACTGTGGAACATGGACCTTCTCTTACTCCAAAAAAGGAAAGTGTAGGAAAATCAAAAAATACGATGGTTGATGCGTCGGATTATCGCGATCCAGGACCAAATCGCCCTGTAATGGCTAGGAATCATAGGGTCCCTATTCCTCCTACAAATGCTTAA

Coding sequence (CDS)

ATGGGTAGCCATAGAATTTTCTCAGTTTTTCTCCTTTCATGCTTTCTCCTTCTCTTTCTCTCTCCTGGATTTGGAGCTGAAGTGATGGTAACTGTGGAACATGGACCTTCTCTTACTCCAAAAAAGGAAAGTGTAGGAAAATCAAAAAATACGATGGTTGATGCGTCGGATTATCGCGATCCAGGACCAAATCGCCCTGTAATGGCTAGGAATCATAGGGTCCCTATTCCTCCTACAAATGCTTAA

Protein sequence

MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTPKKESVGKSKNTMVDASDYRDPGPNRPVMARNHRVPIPPTNA
Homology
BLAST of Tan0010843 vs. NCBI nr
Match: XP_031741770.1 (probable calcium-binding protein CML47 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 7.7e-09
Identity = 42/84 (50.00%), Postives = 50/84 (59.52%), Query Frame = 0

Query: 1  MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTP--KKESVGKSKNTMVD--AS 60
          M   RI  + L+SCFL LFLSPGFG E M T+E   SLTP  K+ S GK ++ MVD    
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60

Query: 61 DYRDPGPNRP--VMARNHRVPIPP 79
          DY  PGPN+P  + A N   P  P
Sbjct: 61 DYHGPGPNKPRSITAPNSATPSSP 84

BLAST of Tan0010843 vs. NCBI nr
Match: KGN52469.1 (hypothetical protein Csa_008670 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = 0

Query: 1  MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTP--KKESVGKSKNTMVD--AS 60
          M   RI  + L+SCFL LFLSPGFG E M T+E   SLTP  K+ S GK ++ MVD    
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60

Query: 61 DYRDPGPNRP--VMARNHRVP 76
          DY  PGPN+P  + A N   P
Sbjct: 61 DYHGPGPNKPRSITAPNSATP 81

BLAST of Tan0010843 vs. NCBI nr
Match: XP_022133550.1 (apidaecins type 73-like isoform X2 [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 5.5e-07
Identity = 40/109 (36.70%), Postives = 51/109 (46.79%), Query Frame = 0

Query: 1   MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTPKKESVGKSKNT--------- 60
           M S  IFS+ L+S  LLLF S GFG +VM + EH  S+TP KES+ KS+           
Sbjct: 1   MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKESIQKSRKVNEVANYHDP 60

Query: 61  -----------------------MVDASDYRDPGPNRPVMARNHRVPIP 78
                                  M++  DY+DPGPNRP+   N   P P
Sbjct: 61  APNHPTMFHPTKILNASPPSLRKMIEVEDYQDPGPNRPIKISNASPPSP 109

BLAST of Tan0010843 vs. NCBI nr
Match: XP_022133549.1 (apidaecins type 14-like isoform X1 [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-06
Identity = 40/110 (36.36%), Postives = 52/110 (47.27%), Query Frame = 0

Query: 1   MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTP-KKESVGKSKNT-------- 60
           M S  IFS+ L+S  LLLF S GFG +VM + EH  S+TP K+ES+ KS+          
Sbjct: 1   MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKQESIQKSRKVNEVANYHD 60

Query: 61  ------------------------MVDASDYRDPGPNRPVMARNHRVPIP 78
                                   M++  DY+DPGPNRP+   N   P P
Sbjct: 61  PAPNHPTMFHPTKILNASPPSLRKMIEVEDYQDPGPNRPIKISNASPPSP 110

BLAST of Tan0010843 vs. NCBI nr
Match: XP_022134005.1 (extensin-like isoform X1 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 6.7e-05
Identity = 39/93 (41.94%), Postives = 45/93 (48.39%), Query Frame = 0

Query: 1  MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTPKKESVGKS------------ 60
          MGS RIF + L S FLLLF S GFG EVM ++EH  S+   KESV KS            
Sbjct: 1  MGSLRIFPLLLASFFLLLFSSHGFGGEVMGSMEHADSI---KESVRKSMIKGDPRPNCPT 60

Query: 61 -------------KNTMVDASDYRDPGPNRPVM 69
                          M++  DY DP PNRP M
Sbjct: 61 MFHPTKISDASPPPRKMIEVEDYHDPRPNRPTM 90

BLAST of Tan0010843 vs. ExPASy TrEMBL
Match: A0A0A0KU89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.3e-09
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = 0

Query: 1  MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTP--KKESVGKSKNTMVD--AS 60
          M   RI  + L+SCFL LFLSPGFG E M T+E   SLTP  K+ S GK ++ MVD    
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60

Query: 61 DYRDPGPNRP--VMARNHRVP 76
          DY  PGPN+P  + A N   P
Sbjct: 61 DYHGPGPNKPRSITAPNSATP 81

BLAST of Tan0010843 vs. ExPASy TrEMBL
Match: A0A6J1BVK3 (apidaecins type 73-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006109 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 40/109 (36.70%), Postives = 51/109 (46.79%), Query Frame = 0

Query: 1   MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTPKKESVGKSKNT--------- 60
           M S  IFS+ L+S  LLLF S GFG +VM + EH  S+TP KES+ KS+           
Sbjct: 1   MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKESIQKSRKVNEVANYHDP 60

Query: 61  -----------------------MVDASDYRDPGPNRPVMARNHRVPIP 78
                                  M++  DY+DPGPNRP+   N   P P
Sbjct: 61  APNHPTMFHPTKILNASPPSLRKMIEVEDYQDPGPNRPIKISNASPPSP 109

BLAST of Tan0010843 vs. ExPASy TrEMBL
Match: A0A6J1BWA5 (apidaecins type 14-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006109 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-06
Identity = 40/110 (36.36%), Postives = 52/110 (47.27%), Query Frame = 0

Query: 1   MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTP-KKESVGKSKNT-------- 60
           M S  IFS+ L+S  LLLF S GFG +VM + EH  S+TP K+ES+ KS+          
Sbjct: 1   MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKQESIQKSRKVNEVANYHD 60

Query: 61  ------------------------MVDASDYRDPGPNRPVMARNHRVPIP 78
                                   M++  DY+DPGPNRP+   N   P P
Sbjct: 61  PAPNHPTMFHPTKILNASPPSLRKMIEVEDYQDPGPNRPIKISNASPPSP 110

BLAST of Tan0010843 vs. ExPASy TrEMBL
Match: A0A6J1BWU2 (extensin-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006390 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.2e-05
Identity = 39/93 (41.94%), Postives = 45/93 (48.39%), Query Frame = 0

Query: 1  MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTPKKESVGKS------------ 60
          MGS RIF + L S FLLLF S GFG EVM ++EH  S+   KESV KS            
Sbjct: 1  MGSLRIFPLLLASFFLLLFSSHGFGGEVMGSMEHADSI---KESVRKSMIKGDPRPNCPT 60

Query: 61 -------------KNTMVDASDYRDPGPNRPVM 69
                          M++  DY DP PNRP M
Sbjct: 61 MFHPTKISDASPPPRKMIEVEDYHDPRPNRPTM 90

BLAST of Tan0010843 vs. ExPASy TrEMBL
Match: A0A5N6QY91 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007572 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 1  MGSHRIFSVFLLSCFLLLFLSPGFGAEVMVTVEHGPSLTPKKESVGKSKNTMVDASDYRD 60
          MG      + LLS  L+L  S GFG++VM TV+H  S    +E+VG+S+  M +  DY+D
Sbjct: 1  MGRFCFLRILLLSSLLVLCFSHGFGSKVMETVQHEDSGVQVEETVGESRE-MTEVMDYQD 60

Query: 61 PGPN 65
          PGPN
Sbjct: 61 PGPN 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_031741770.17.7e-0950.00probable calcium-binding protein CML47 [Cucumis sativus][more]
KGN52469.11.3e-0850.62hypothetical protein Csa_008670 [Cucumis sativus][more]
XP_022133550.15.5e-0736.70apidaecins type 73-like isoform X2 [Momordica charantia][more]
XP_022133549.16.1e-0636.36apidaecins type 14-like isoform X1 [Momordica charantia][more]
XP_022134005.16.7e-0541.94extensin-like isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A0A0KU896.3e-0950.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1[more]
A0A6J1BVK32.7e-0736.70apidaecins type 73-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC11100610... [more]
A0A6J1BWA52.9e-0636.36apidaecins type 14-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11100610... [more]
A0A6J1BWU23.2e-0541.94extensin-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006390 PE=4 SV=... [more]
A0A5N6QY916.1e-0445.31Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007572 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0010843.1Tan0010843.1mRNA