Tan0009819 (gene) Snake gourd v1

Overview


Name	Tan0009819
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG04: 8433745 .. 8435252 (-)
RNA-Seq Expression	Tan0009819
Synteny	Tan0009819

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTTAAAATTGACGGTCAGATTGGGCAGAAAAGTGGAGAGTACAGAGAACTACAGATTCGAAAGCCCAAACCCAAAAAAAGAAAACCCCGCCCTGCTCAGTCGCTGATGACACCAGGTGTCCCACCATTCGACGGCGACCCTGCCACGTCATTCACGAATCTCTTATCTCCACGTCACCACCATCCTACGGTCCTTAATTCCAGCATCTCTCATCATCCAACGACTCTCCCCATCCCTTCCAGAGTGTTCGAATCGCAAAGGCCAGAGCCAGAGAGTGGGTCGGCATCTAACCAGGGTTAGTTATTCTAACCACGCTTCTCTCACTCGAGTTAAAGAACGTTCCGAGAACACACAATTTCTGAGAGCCAACAAAACACAACACAACACAGCAAACGGAGAATAAAAAGAAAAGCGAAGAGAAGACAGAGGCGAAACTGCGAAAGGATTTCTGTCTGAGTTTGTTAAACTCCCTTCACTTAAGCTCGGACGATTCTTTGCTCTGCCCTTTTCTTCCATTTGATTCATTCAACCCCCTCTCATTTCTCCTTTTTCCCAAGTTCTTACGCCGTCGATTGATTCACGGATTGCGACGATTTGGGTGGTCAATCTGATTCGTTCCTTTGTTGGATCTTCTAAGATCTATACAATTCCGGTGAGTTCTTTCTCCGATTTCGAAGTTTTTACCTACTAATGTTTGTTTTTTGAGGAGTATGCGTTGAATGAATGATGCCCTTTTTTTTTCTCTCCTTCTGTTTACTTGTTTCTCATTGTTGAATTTCATTTCTCTGATCAGTCGCCACTCCAGAACGTCGTATTGAGCTTGGTCTCTTTTGGATCTTCTCTCCTGCCCCGAGGGGTGCGGGGAGGGGGGAGGAGGTGCACCTTTCACAGATTTCCTTTTACTGTTGGGATTTGTTCTTGAGCGCGAATGAGGATCTCGTTCCGATCATTTCTTTGCTTACACGATGAAGTGGTTAGAGAAGAGATCCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTTCTCTGTCTCTGGGAGAATCTGTTTTTGGAATCTTTGGCTTTTTGGGCCTTCAAATTTCATCGGGATGTTTATTTTCTTTACATAGGGAACGCGGTTTGCCCTTCCTTTTATTAACTCAGGACGACGTGTAAGCTAATCGATGAATGTGTATTTCACCCTAGCGGGCTTTTGCTACTATTGATATTTTGATCTTACATTAAATTTTGGTTTCCTTGCCAAAAAAAGGACCATAAATAATGCATCAATAAGTGTTCTTGGTGTATGTATTCTTTTGTCAAATCTCTTGTCCAGCTCTAGGTTTGGGCCATCTTATTGGCAAGTGTAGATGAATTTATCTTTTTGTTTGGGCATCTATCTAATGGTGGTTAATTTTGTATCAATGTTTTGTTTCTTCTGGTCAAGTGTTGGTTTTGATTTTTGATTTTGTTTGTTTTACTTCCGCAGATAATCAGGTGCTGTGAATCTGGCGAAATGGATCTGTAG

mRNA sequence

ATGGTGGTTAAAATTGACGGTCAGATTGGGCAGAAAAGTGGAGAGTACAGAGAACTACAGATTCGAAAGCCCAAACCCAAAAAAAGAAAACCCCGCCCTGCTCAGTCGCTGATGACACCAGGTGTCCCACCATTCGACGGCGACCCTGCCACGTCATTCACGAATCTCTTATCTCCACGTCACCACCATCCTACGGTCCTTAATTCCAGCATCTCTCATCATCCAACGACTCTCCCCATCCCTTCCAGAGTGTTCGAATCGCAAAGGCCAGAGCCAGAGAGTGGGTCGGCATCTAACCAGGTTCTTACGCCGTCGATTGATTCACGGATTGCGACGATTTGGGTGGTCAATCTGATTCGTTCCTTTGTTGGATCTTCTAAGATCTATACAATTCCGTCGCCACTCCAGAACGTCGTATTGAGCTTGGTCTCTTTTGGATCTTCTCTCCTGCCCCGAGGGGTGCGGGGAGGGGGGAGGAGGATCTCGTTCCGATCATTTCTTTGCTTACACGATGAAGTGATAATCAGGTGCTGTGAATCTGGCGAAATGGATCTGTAG

Coding sequence (CDS)

ATGGTGGTTAAAATTGACGGTCAGATTGGGCAGAAAAGTGGAGAGTACAGAGAACTACAGATTCGAAAGCCCAAACCCAAAAAAAGAAAACCCCGCCCTGCTCAGTCGCTGATGACACCAGGTGTCCCACCATTCGACGGCGACCCTGCCACGTCATTCACGAATCTCTTATCTCCACGTCACCACCATCCTACGGTCCTTAATTCCAGCATCTCTCATCATCCAACGACTCTCCCCATCCCTTCCAGAGTGTTCGAATCGCAAAGGCCAGAGCCAGAGAGTGGGTCGGCATCTAACCAGGTTCTTACGCCGTCGATTGATTCACGGATTGCGACGATTTGGGTGGTCAATCTGATTCGTTCCTTTGTTGGATCTTCTAAGATCTATACAATTCCGTCGCCACTCCAGAACGTCGTATTGAGCTTGGTCTCTTTTGGATCTTCTCTCCTGCCCCGAGGGGTGCGGGGAGGGGGGAGGAGGATCTCGTTCCGATCATTTCTTTGCTTACACGATGAAGTGATAATCAGGTGCTGTGAATCTGGCGAAATGGATCTGTAG

Protein sequence

MVVKIDGQIGQKSGEYRELQIRKPKPKKRKPRPAQSLMTPGVPPFDGDPATSFTNLLSPRHHHPTVLNSSISHHPTTLPIPSRVFESQRPEPESGSASNQVLTPSIDSRIATIWVVNLIRSFVGSSKIYTIPSPLQNVVLSLVSFGSSLLPRGVRGGGRRISFRSFLCLHDEVIIRCCESGEMDL

Homology

[Close]

BLAST of Tan0009819 vs. ExPASy TrEMBL
Match: A0A0A0KQY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606900 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-22
Identity = 90/184 (48.91%), Postives = 101/184 (54.89%), Query Frame = 0


Query: 38  MTPGVPPFDGDP-ATSFTNLLSPRH---HHPTVLNSSISHHPTTLPIPSRV-FESQRPEP 97
           MTPGVPPFD +P ATSFTNLLSP H    HPT+L S         P PSRV  E+Q+P+ 
Sbjct: 1   MTPGVPPFDAEPSATSFTNLLSPPHPSLFHPTLLISIYFSSSNGSPFPSRVKRETQKPKG 60

Query: 98  ESGSASNQVLT----------PSIDSRIATIWVVNLIR----SFVGSSKIYTIPSPLQNV 157
                    L+          P+I      I   +LI      +V  S  +    PLQNV
Sbjct: 61  LKQIGRRGFLSDFAFLLRRFFPAIFLDFIFIHSRHLILFCRIGYVTDSDEFWC-LPLQNV 120

Query: 158 VLSLVSFGSSLLPRGV-RGGGR----------------RISFRSFLCLHDEVIIRCCESG 186
           VLSLVSFGSSLLPRG   GGGR                RISFRSF+CLHDEVII CCESG
Sbjct: 121 VLSLVSFGSSLLPRGEGEGGGRCASFTDFVLLLGFVRMRISFRSFVCLHDEVIICCCESG 180

The following BLAST results are available for this feature:

BLAST of Tan0009819 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009819 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009819 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQY6	1.8e-22	48.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606900 PE=4 SV=1	[more]

BLAST of Tan0009819 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009819.1	Tan0009819.1	mRNA