Tan0008331 (gene) Snake gourd v1

Overview


Name	Tan0008331
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrotran_gag_3 domain-containing protein
Location	LG08: 73799092 .. 73799388 (-)
RNA-Seq Expression	Tan0008331
Synteny	Tan0008331

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCACAGCAGTTTCTCAATCAACATCCTCACCTTTGTTTCTACTCTCCAACATCTGCAGTCTTGTGCCGATTCGACTGGATTCAACAAATTATGTATTATGGAAATTTCAGATCTCATCCATTCTGAAGGCCCATTCTCTCTTTGGTCACATTGATGACTCTCTTCCTAGACCCGGACAGTTTCTTTCTTCATTTACTGGCATTATCACCACAGAGATCAATCCTGAATACTTACAATGGATCTCTGTTGTGCAAAAACTCACTACGCAAGCATACGCAAATCGTAGGTAG

mRNA sequence

ATGTCCTCCACAGCAGTTTCTCAATCAACATCCTCACCTTTGTTTCTACTCTCCAACATCTGCAGTCTTGTGCCGATTCGACTGGATTCAACAAATTATGTATTATGGAAATTTCAGATCTCATCCATTCTGAAGGCCCATTCTCTCTTTGGTCACATTGATGACTCTCTTCCTAGACCCGGACAGTTTCTTTCTTCATTTACTGGCATTATCACCACAGAGATCAATCCTGAATACTTACAATGGATCTCTGTTGTGCAAAAACTCACTACGCAAGCATACGCAAATCGTAGGTAG

Coding sequence (CDS)

ATGTCCTCCACAGCAGTTTCTCAATCAACATCCTCACCTTTGTTTCTACTCTCCAACATCTGCAGTCTTGTGCCGATTCGACTGGATTCAACAAATTATGTATTATGGAAATTTCAGATCTCATCCATTCTGAAGGCCCATTCTCTCTTTGGTCACATTGATGACTCTCTTCCTAGACCCGGACAGTTTCTTTCTTCATTTACTGGCATTATCACCACAGAGATCAATCCTGAATACTTACAATGGATCTCTGTTGTGCAAAAACTCACTACGCAAGCATACGCAAATCGTAGGTAG

Protein sequence

MSSTAVSQSTSSPLFLLSNICSLVPIRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPRPGQFLSSFTGIITTEINPEYLQWISVVQKLTTQAYANRR

Homology

[Close]

BLAST of Tan0008331 vs. NCBI nr
Match: KAA0061282.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 6.6e-23
Identity = 62/96 (64.58%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 2   SSTAVSQSTSSP------LFLLSNICSLVPIRLDSTNYVLWKFQISSILKAHSLFGHIDD 61
           +S  + +S+S+P      LFLLSNIC+LVPIRLDSTNYVLWK+Q+SSILKAHSLFGHIDD
Sbjct: 13  TSNPIPESSSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDD 72

Query: 62  SLPRPGQFLSSFTGIITTEINPEYLQWISVVQKLTT 92
           +LP P + L S T    +EINPEYLQW+S  Q L T
Sbjct: 73  TLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALIT 108

[Close]

BLAST of Tan0008331 vs. NCBI nr
Match: TYJ97594.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 6.6e-23
Identity = 62/96 (64.58%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 2   SSTAVSQSTSSP------LFLLSNICSLVPIRLDSTNYVLWKFQISSILKAHSLFGHIDD 61
           +S  + +S+S+P      LFLLSNIC+LVPIRLDSTNYVLWK+Q+SSILKAHSLFGHIDD
Sbjct: 13  TSNPIPESSSNPYVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDD 72

Query: 62  SLPRPGQFLSSFTGIITTEINPEYLQWISVVQKLTT 92
           +LP P + L S T    +EINPEYLQW+S  Q L T
Sbjct: 73  TLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALIT 108

[Close]

BLAST of Tan0008331 vs. NCBI nr
Match: KAA0067173.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26022.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 6.6e-23
Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1   MSSTAVSQSTSSPLFLLSNICSLVPIRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPRP 60
           + S++ S   +S LFLLSNIC+LVPIRLDSTNY+LWK+Q+SSILKAHS FGHIDD+LP P
Sbjct: 18  LESSSNSFVPTSTLFLLSNICNLVPIRLDSTNYILWKYQVSSILKAHSFFGHIDDTLPCP 77

Query: 61  GQFLSSFTGIITTEINPEYLQWISVVQKLTT 92
            + LSS T    +EINPEYLQW+S  Q L T
Sbjct: 78  PKHLSSSTLGTNSEINPEYLQWLSRSQALIT 108

[Close]

BLAST of Tan0008331 vs. NCBI nr
Match: KAA0056771.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 61/96 (63.54%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 2   SSTAVSQSTSSP------LFLLSNICSLVPIRLDSTNYVLWKFQISSILKAHSLFGHIDD 61
           +S  + +S+S+P      LFLLSNIC+LVPIRLDSTNYVLWK+Q+SSILKAHSLFGHIDD
Sbjct: 13  TSNPIPESSSNPYVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDD 72

Query: 62  SLPRPGQFLSSFTGIITTEINPEYLQWISVVQKLTT 92
           +LP P + L S T    +EINP+YLQW+S  Q L T
Sbjct: 73  TLPCPPKHLPSSTLGTNSEINPKYLQWLSRDQALIT 108

[Close]

BLAST of Tan0008331 vs. NCBI nr
Match: TYK11141.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 5.6e-22
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 2   SSTAVSQSTSSP------LFLLSNICSLVPIRLDSTNYVLWKFQISSILKAHSLFGHIDD 61
           S T + +S+S+P      LFLLSNIC+LVPIRLDSTNYVLWK+Q+SSILKAHSLFGHIDD
Sbjct: 41  SLTLIIRSSSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDD 100

Query: 62  SLPRPGQFLSSFTGIITTEINPEYLQWISVVQKLTT 92
           +LP P +   S T    +EINPEY+QW+S  Q L T
Sbjct: 101 TLPCPPKHSPSSTLRTNSEINPEYVQWLSRDQALIT 136

[Close]

BLAST of Tan0008331 vs. ExPASy TrEMBL
Match: A0A5A7VGG0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00280 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.2e-23
Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1   MSSTAVSQSTSSPLFLLSNICSLVPIRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPRP 60
           + S++ S   +S LFLLSNIC+LVPIRLDSTNY+LWK+Q+SSILKAHS FGHIDD+LP P
Sbjct: 18  LESSSNSFVPTSTLFLLSNICNLVPIRLDSTNYILWKYQVSSILKAHSFFGHIDDTLPCP 77

Query: 61  GQFLSSFTGIITTEINPEYLQWISVVQKLTT 92
            + LSS T    +EINPEYLQW+S  Q L T
Sbjct: 78  PKHLSSSTLGTNSEINPEYLQWLSRSQALIT 108

[Close]

BLAST of Tan0008331 vs. ExPASy TrEMBL
Match: A0A5A7UZE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00300 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.2e-23
Identity = 62/96 (64.58%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 2   SSTAVSQSTSSP------LFLLSNICSLVPIRLDSTNYVLWKFQISSILKAHSLFGHIDD 61
           +S  + +S+S+P      LFLLSNIC+LVPIRLDSTNYVLWK+Q+SSILKAHSLFGHIDD
Sbjct: 13  TSNPIPESSSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDD 72

Query: 62  SLPRPGQFLSSFTGIITTEINPEYLQWISVVQKLTT 92
           +LP P + L S T    +EINPEYLQW+S  Q L T
Sbjct: 73  TLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALIT 108

[Close]

BLAST of Tan0008331 vs. ExPASy TrEMBL
Match: A0A5D3BEU0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00250 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.2e-23
Identity = 62/96 (64.58%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 2   SSTAVSQSTSSP------LFLLSNICSLVPIRLDSTNYVLWKFQISSILKAHSLFGHIDD 61
           +S  + +S+S+P      LFLLSNIC+LVPIRLDSTNYVLWK+Q+SSILKAHSLFGHIDD
Sbjct: 13  TSNPIPESSSNPYVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDD 72

Query: 62  SLPRPGQFLSSFTGIITTEINPEYLQWISVVQKLTT 92
           +LP P + L S T    +EINPEYLQW+S  Q L T
Sbjct: 73  TLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALIT 108

[Close]

BLAST of Tan0008331 vs. ExPASy TrEMBL
Match: A0A5A7UTE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00610 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.3e-23
Identity = 61/96 (63.54%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 2   SSTAVSQSTSSP------LFLLSNICSLVPIRLDSTNYVLWKFQISSILKAHSLFGHIDD 61
           +S  + +S+S+P      LFLLSNIC+LVPIRLDSTNYVLWK+Q+SSILKAHSLFGHIDD
Sbjct: 13  TSNPIPESSSNPYVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDD 72

Query: 62  SLPRPGQFLSSFTGIITTEINPEYLQWISVVQKLTT 92
           +LP P + L S T    +EINP+YLQW+S  Q L T
Sbjct: 73  TLPCPPKHLPSSTLGTNSEINPKYLQWLSRDQALIT 108

[Close]

BLAST of Tan0008331 vs. ExPASy TrEMBL
Match: A0A5D3CH60 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00480 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.7e-22
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 2   SSTAVSQSTSSP------LFLLSNICSLVPIRLDSTNYVLWKFQISSILKAHSLFGHIDD 61
           S T + +S+S+P      LFLLSNIC+LVPIRLDSTNYVLWK+Q+SSILKAHSLFGHIDD
Sbjct: 41  SLTLIIRSSSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDD 100

Query: 62  SLPRPGQFLSSFTGIITTEINPEYLQWISVVQKLTT 92
           +LP P +   S T    +EINPEY+QW+S  Q L T
Sbjct: 101 TLPCPPKHSPSSTLRTNSEINPEYVQWLSRDQALIT 136

The following BLAST results are available for this feature:

BLAST of Tan0008331 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0008331 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061282.1	6.6e-23	64.58	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative m...	[more]
TYJ97594.1	6.6e-23	64.58	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0067173.1	6.6e-23	65.93	retrotransposon protein [Cucumis melo var. makuwa] >TYK26022.1 retrotransposon p...	[more]
KAA0056771.1	1.9e-22	63.54	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK11141.1	5.6e-22	63.54	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0008331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGG0	3.2e-23	65.93	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UZE5	3.2e-23	64.58	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BEU0	3.2e-23	64.58	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7UTE5	9.3e-23	63.54	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3CH60	2.7e-22	63.54	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Tan0008331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 22..60 e-value: 2.5E-7 score: 30.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008331.1	Tan0008331.1	mRNA