Tan0008235 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTTTTCTTCTTCCTTCCTCGCTAATGGCAGAGCAAATCATTTCTGTAGAATCTCCAACCGCTACTACAGACTTGATCGCCATTAACGAGGATAAGAATAAGAACAAGTTGGTCGTCCTCGACTGTAATAACAATAACGATCATGGCATCGTCGTCCCTAAGAAGATGAAGAAGAAGAGCGTTAACATTCTCAAGGTGGCTTTGATGCTCCTTCGTCGCCGCTCCAGCAAATCCAATGTCGCCGCCGTTGATGTCGCCTCCAAGAGTATGTGGAAGCGCTTTGTTGGCTCCATGCGCCCTTTGCATTTGCAGAGCCCTGAGCAAGAAGGTGTTGTTGTTCCTCCCTTGTCATTGCCCTCGACCGAGCCCTTGACTTTGGAGCCTATAGCGGTCGGGTTGCGCGCCTCCCCGTCCCTCGAGAGCTTTGAAGATGTTATGTCGTCGCCGTTTTCTCCTATTCATGCTCCTAAATCACCCTCCTCTTCTGTTGATGGGATGAGCAGGTATCATACTCTTTTCATAAAATTGAGATCTCGATCATCTACCTTGACATTTTGAACTTGTTTATAGCCAAATTTTAAGAGTTGGTGCATTGATACTTAATTTTTTTAAATTACAAATTTATCATGAAACATGTAAAAGTTAGGTGAGATTTTCTTTCGGTGGATGCTTAGTTACCCCTTTCATGTTTTTAACTCAGGTACGCCTCGGCCATCAACCTTCATGATCTAGACCAAAACGACGACAATGTCGAAGACGAGAACGACGGTGAAGCCGAGGCAAACATGAACGGAGGCGACGAGATGATCGACGCGAAAGCAGAGATGTTCATAGCTCAATTCTACGAACAAATGAGGCTTCAACGTTCGGACTCTGATATCCGTTACCACGAGATGATTAAGAGATCGATTGGCTAA CTTTTCTTCTTCCTTCCTCGCTAATGGCAGAGCAAATCATTTCTGTAGAATCTCCAACCGCTACTACAGACTTGATCGCCATTAACGAGGATAAGAATAAGAACAAGTTGGTCGTCCTCGACTGTAATAACAATAACGATCATGGCATCGTCGTCCCTAAGAAGATGAAGAAGAAGAGCGTTAACATTCTCAAGGTGGCTTTGATGCTCCTTCGTCGCCGCTCCAGCAAATCCAATGTCGCCGCCGTTGATGTCGCCTCCAAGAGTATGTGGAAGCGCTTTGTTGGCTCCATGCGCCCTTTGCATTTGCAGAGCCCTGAGCAAGAAGGTGTTGTTGTTCCTCCCTTGTCATTGCCCTCGACCGAGCCCTTGACTTTGGAGCCTATAGCGGTCGGGTTGCGCGCCTCCCCGTCCCTCGAGAGCTTTGAAGATGTTATGTCGTCGCCGTTTTCTCCTATTCATGCTCCTAAATCACCCTCCTCTTCTGTTGATGGGATGAGCAGGTACGCCTCGGCCATCAACCTTCATGATCTAGACCAAAACGACGACAATGTCGAAGACGAGAACGACGGTGAAGCCGAGGCAAACATGAACGGAGGCGACGAGATGATCGACGCGAAAGCAGAGATGTTCATAGCTCAATTCTACGAACAAATGAGGCTTCAACGTTCGGACTCTGATATCCGTTACCACGAGATGATTAAGAGATCGATTGGCTAA ATGGCAGAGCAAATCATTTCTGTAGAATCTCCAACCGCTACTACAGACTTGATCGCCATTAACGAGGATAAGAATAAGAACAAGTTGGTCGTCCTCGACTGTAATAACAATAACGATCATGGCATCGTCGTCCCTAAGAAGATGAAGAAGAAGAGCGTTAACATTCTCAAGGTGGCTTTGATGCTCCTTCGTCGCCGCTCCAGCAAATCCAATGTCGCCGCCGTTGATGTCGCCTCCAAGAGTATGTGGAAGCGCTTTGTTGGCTCCATGCGCCCTTTGCATTTGCAGAGCCCTGAGCAAGAAGGTGTTGTTGTTCCTCCCTTGTCATTGCCCTCGACCGAGCCCTTGACTTTGGAGCCTATAGCGGTCGGGTTGCGCGCCTCCCCGTCCCTCGAGAGCTTTGAAGATGTTATGTCGTCGCCGTTTTCTCCTATTCATGCTCCTAAATCACCCTCCTCTTCTGTTGATGGGATGAGCAGGTACGCCTCGGCCATCAACCTTCATGATCTAGACCAAAACGACGACAATGTCGAAGACGAGAACGACGGTGAAGCCGAGGCAAACATGAACGGAGGCGACGAGATGATCGACGCGAAAGCAGAGATGTTCATAGCTCAATTCTACGAACAAATGAGGCTTCAACGTTCGGACTCTGATATCCGTTACCACGAGATGATTAAGAGATCGATTGGCTAA MAEQIISVESPTATTDLIAINEDKNKNKLVVLDCNNNNDHGIVVPKKMKKKSVNILKVALMLLRRRSSKSNVAAVDVASKSMWKRFVGSMRPLHLQSPEQEGVVVPPLSLPSTEPLTLEPIAVGLRASPSLESFEDVMSSPFSPIHAPKSPSSSVDGMSRYASAINLHDLDQNDDNVEDENDGEAEANMNGGDEMIDAKAEMFIAQFYEQMRLQRSDSDIRYHEMIKRSIG Homology
BLAST of Tan0008235 vs. NCBI nr
Match: XP_038906029.1 (uncharacterized protein LOC120091932 [Benincasa hispida]) HSP 1 Score: 209.1 bits (531), Expect = 3.9e-50 Identity = 139/240 (57.92%), Postives = 162/240 (67.50%), Query Frame = 0
BLAST of Tan0008235 vs. NCBI nr
Match: XP_004152232.2 (uncharacterized protein LOC101222123 [Cucumis sativus] >KGN52840.1 hypothetical protein Csa_015370 [Cucumis sativus]) HSP 1 Score: 190.3 bits (482), Expect = 1.9e-44 Identity = 129/228 (56.58%), Postives = 152/228 (66.67%), Query Frame = 0
BLAST of Tan0008235 vs. NCBI nr
Match: XP_023524600.1 (GATA zinc finger domain-containing protein 8-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 183.0 bits (463), Expect = 3.0e-42 Identity = 126/238 (52.94%), Postives = 159/238 (66.81%), Query Frame = 0
BLAST of Tan0008235 vs. NCBI nr
Match: XP_022998628.1 (uncharacterized protein LOC111493213 [Cucurbita maxima]) HSP 1 Score: 182.2 bits (461), Expect = 5.2e-42 Identity = 125/237 (52.74%), Postives = 157/237 (66.24%), Query Frame = 0
BLAST of Tan0008235 vs. NCBI nr
Match: XP_016901496.1 (PREDICTED: uncharacterized protein LOC103494745 [Cucumis melo] >KAA0044405.1 DUF761 domain-containing protein [Cucumis melo var. makuwa] >TYK29532.1 DUF761 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 181.8 bits (460), Expect = 6.7e-42 Identity = 121/204 (59.31%), Postives = 143/204 (70.10%), Query Frame = 0
BLAST of Tan0008235 vs. ExPASy TrEMBL
Match: A0A0A0KT88 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G002570 PE=4 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 9.2e-45 Identity = 129/228 (56.58%), Postives = 152/228 (66.67%), Query Frame = 0
BLAST of Tan0008235 vs. ExPASy TrEMBL
Match: A0A6J1KHA3 (uncharacterized protein LOC111493213 OS=Cucurbita maxima OX=3661 GN=LOC111493213 PE=4 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42 Identity = 125/237 (52.74%), Postives = 157/237 (66.24%), Query Frame = 0
BLAST of Tan0008235 vs. ExPASy TrEMBL
Match: A0A5A7TSQ6 (DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001350 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.3e-42 Identity = 121/204 (59.31%), Postives = 143/204 (70.10%), Query Frame = 0
BLAST of Tan0008235 vs. ExPASy TrEMBL
Match: A0A1S4DZU7 (uncharacterized protein LOC103494745 OS=Cucumis melo OX=3656 GN=LOC103494745 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.3e-42 Identity = 121/204 (59.31%), Postives = 143/204 (70.10%), Query Frame = 0
BLAST of Tan0008235 vs. ExPASy TrEMBL
Match: A0A6J1GBN8 (GATA zinc finger domain-containing protein 8-like OS=Cucurbita moschata OX=3662 GN=LOC111452503 PE=4 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 9.5e-42 Identity = 125/238 (52.52%), Postives = 154/238 (64.71%), Query Frame = 0
BLAST of Tan0008235 vs. TAIR 10
Match: AT4G02160.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61710.1); Has 35 Blast hits to 35 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 70.1 bits (170), Expect = 2.7e-12 Identity = 63/177 (35.59%), Postives = 89/177 (50.28%), Query Frame = 0
BLAST of Tan0008235 vs. TAIR 10
Match: AT5G61710.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 56.2 bits (134), Expect = 4.0e-08 Identity = 50/170 (29.41%), Postives = 82/170 (48.24%), Query Frame = 0
BLAST of Tan0008235 vs. TAIR 10
Match: AT4G26130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56980.1); Has 121 Blast hits to 116 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). ) HSP 1 Score: 43.1 bits (100), Expect = 3.5e-04 Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 0
BLAST of Tan0008235 vs. TAIR 10
Match: AT5G56980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 42.0 bits (97), Expect = 7.8e-04 Identity = 20/44 (45.45%), Postives = 30/44 (68.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|