Tan0007528 (gene) Snake gourd v1

Overview


Name	Tan0007528
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Heavy metal-associated domain containing protein
Location	LG04: 7482817 .. 7484077 (+)
RNA-Seq Expression	Tan0007528
Synteny	Tan0007528

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATTTCTCATCATCATTTCACTCTCTCTCACAGCTTACCCCCCTTTTACTTATCTTCCTTCCCCTTCTTCCTTTTCACAATCCCATCATCATCCATGGCTCATAAAATCATCCCCTGTTTCACCGCCGGCGTTTAACCGGAGCATGGCGGAGCGGGGAAAAAAGAAGGCGGCGCCGGCGGGAATCGGAGTTCGGAAGCAAAAGATTTTCCCTCATGCTTCTAGCCTTGCCTCCATTGAATCCTTATCACTGCCTCTCGTCTCTGCTTTTTCTCTCCATCTTTACCATTCTTTTAAACTCCTACGGCTTAAATTAATCGTTAATGGCCCTTCCTTGATTTTCCAGGTTCAGGAAATTGTGTTAACGGCTGATATTGGATGTGCTGAATGTCAGAAAAAACTAGCGAATATTCTGTCCAAAATGAATGGTGAGCTTCTTGGGGAATTTGATTTGATTCCATCTTTCAATTTCAATGGTGACGATTCTTCCCCCATCTGGGATTTTGATTCTGACCAAATCAGAACTTGAAATTTTGCCATTGATGTCCATGGGAAAAACATCCCCTGTTCATTTTCTAATTTTTTTGGGTAATGTAAACAAGTTTCTGAATAATAATTCTTGTTCTGGGTACAGATACAGAGTCTGTGGTGGTGAATTTGCTGGATAAAAAAGTGATCTTGACTCGAAGATTGCAGATTCCATCCACGTGCAACGATTCTCCAAGTAAAGTTTCAACGATCAAGAGATTGCTTGGTTCTTCTTTCAGATAATGGTGAAGATATTGTAATATATAATGGAATATTTTCGGTCACGTTCGTAGATAAATAAATGAGCATATTGTTTGTTGTTTAGCTTCAAAGAAAAAGGTTTTAGAGACATTGCCTTTTTTTTTTTTCTTTATGAAAATATTTGAAGGAATATTAAATATTGCCTTTTGATTTTTGAATGCAACAAAATCGTCGTACTTTAAAAGATGATTTTTGTCCGAATTGAGCACAGTTTGAAGAGCTGTGTTTAGCTGGAAACATAAACATGGTTCTGGCGCAACGTAATTATGTGTTTAATGGATGAATTTGCTCTGTATTGGTCGGTGGTCTTGTTTTGATGTTCATGCGTCTGTCTCTTTGAAGGGCATTGAAAAGTATGTATACTTCATTGTCTGTTTGTGTCAATTTAGTTGTTGTATTTTTTTTTAAGTTTTATTGTAATAATTGTATTTTAGTTAAATATATACAATAGACTTTGTCATTTATGAATGTAA

mRNA sequence

CTATTTCTCATCATCATTTCACTCTCTCTCACAGCTTACCCCCCTTTTACTTATCTTCCTTCCCCTTCTTCCTTTTCACAATCCCATCATCATCCATGGCTCATAAAATCATCCCCTGTTTCACCGCCGGCGTTTAACCGGAGCATGGCGGAGCGGGGAAAAAAGAAGGCGGCGCCGGCGGGAATCGGAGTTCGGAAGCAAAAGATTTTCCCTCATGCTTCTAGCCTTGCCTCCATTGAATCCTTATCACTGCCTCTCGTTCAGGAAATTGTGTTAACGGCTGATATTGGATGTGCTGAATGTCAGAAAAAACTAGCGAATATTCTGTCCAAAATGAATGATACAGAGTCTGTGGTGGTGAATTTGCTGGATAAAAAAGTGATCTTGACTCGAAGATTGCAGATTCCATCCACGTGCAACGATTCTCCAAGTAAAGTTTCAACGATCAAGAGATTGCTTGGTTCTTCTTTCAGATAATGGTGAAGATATTGTAATATATAATGGAATATTTTCGGTCACGTTCGTAGATAAATAAATGAGCATATTGTTTGTTGTTTAGCTTCAAAGAAAAAGGTTTTAGAGACATTGCCTTTTTTTTTTTTCTTTATGAAAATATTTGAAGGAATATTAAATATTGCCTTTTGATTTTTGAATGCAACAAAATCGTCGTACTTTAAAAGATGATTTTTGTCCGAATTGAGCACAGTTTGAAGAGCTGTGTTTAGCTGGAAACATAAACATGGTTCTGGCGCAACGTAATTATGTGTTTAATGGATGAATTTGCTCTGTATTGGTCGGTGGTCTTGTTTTGATGTTCATGCGTCTGTCTCTTTGAAGGGCATTGAAAAGTATGTATACTTCATTGTCTGTTTGTGTCAATTTAGTTGTTGTATTTTTTTTTAAGTTTTATTGTAATAATTGTATTTTAGTTAAATATATACAATAGACTTTGTCATTTATGAATGTAA

Coding sequence (CDS)

ATGGCGGAGCGGGGAAAAAAGAAGGCGGCGCCGGCGGGAATCGGAGTTCGGAAGCAAAAGATTTTCCCTCATGCTTCTAGCCTTGCCTCCATTGAATCCTTATCACTGCCTCTCGTTCAGGAAATTGTGTTAACGGCTGATATTGGATGTGCTGAATGTCAGAAAAAACTAGCGAATATTCTGTCCAAAATGAATGATACAGAGTCTGTGGTGGTGAATTTGCTGGATAAAAAAGTGATCTTGACTCGAAGATTGCAGATTCCATCCACGTGCAACGATTCTCCAAGTAAAGTTTCAACGATCAAGAGATTGCTTGGTTCTTCTTTCAGATAA

Protein sequence

MAERGKKKAAPAGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCAECQKKLANILSKMNDTESVVVNLLDKKVILTRRLQIPSTCNDSPSKVSTIKRLLGSSFR

Homology

[Close]

BLAST of Tan0007528 vs. NCBI nr
Match: XP_022150612.1 (uncharacterized protein LOC111018707 [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 5.7e-39
Identity = 94/110 (85.45%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MAERGKKKAAPAGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCAECQKKLANI 60
           MAER KKKAA   IGVRK +IFPHASSLASIESLSLPLVQEIVLTADI C ECQ KLANI
Sbjct: 1   MAERAKKKAAV--IGVRKPRIFPHASSLASIESLSLPLVQEIVLTADIRCPECQNKLANI 60

Query: 61  LSKMNDTESVVVNLLDKKVILTRRLQIPSTCNDSPSKVSTIKRLLGSSFR 111
           LSK+NDTESVVVNLL+KKVILTRRLQ+PSTC++S SKV+TIKRLLGSSFR
Sbjct: 61  LSKINDTESVVVNLLEKKVILTRRLQVPSTCSNSSSKVATIKRLLGSSFR 108

[Close]

BLAST of Tan0007528 vs. NCBI nr
Match: KAG7013033.1 (hypothetical protein SDJN02_25789 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.2 bits (417), Expect = 3.1e-37
Identity = 93/110 (84.55%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 1   MAERGKKKAAPAGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCAECQKKLANI 60
           MAER  K AA AGIGVRK KIFPHASSLASIESLSLPLVQEIV  ADIGCAECQKKLANI
Sbjct: 1   MAERPNKTAAAAGIGVRKLKIFPHASSLASIESLSLPLVQEIVFAADIGCAECQKKLANI 60

Query: 61  LSKMNDTESVVVNLLDKKVILTRRLQIPSTCNDSPSKVSTIKRLLGSSFR 111
           L+KMNDTESVVVNLLDKKVILTR+LQIP+      S+VSTIKRLLGSSFR
Sbjct: 61  LAKMNDTESVVVNLLDKKVILTRKLQIPT------SRVSTIKRLLGSSFR 104

[Close]

BLAST of Tan0007528 vs. NCBI nr
Match: XP_022968296.1 (uncharacterized protein LOC111467567 isoform X3 [Cucurbita maxima])

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-37
Identity = 95/111 (85.59%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MAER-GKKKAAPAGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCAECQKKLAN 60
           MAER  K  AA AGIGVRK KIFPHASSLASIESLSLPLVQEIV TADIGCAECQKKLAN
Sbjct: 1   MAERPNKAAAAAAGIGVRKLKIFPHASSLASIESLSLPLVQEIVFTADIGCAECQKKLAN 60

Query: 61  ILSKMNDTESVVVNLLDKKVILTRRLQIPSTCNDSPSKVSTIKRLLGSSFR 111
           ILSKMNDTESVVVNLLDKKVILTR+LQIPS      S+VST+KRLLGSSFR
Sbjct: 61  ILSKMNDTESVVVNLLDKKVILTRKLQIPS------SRVSTVKRLLGSSFR 105

[Close]

BLAST of Tan0007528 vs. NCBI nr
Match: KAG6573976.1 (hypothetical protein SDJN03_27863, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.7 bits (413), Expect = 9.0e-37
Identity = 92/110 (83.64%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 1   MAERGKKKAAPAGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCAECQKKLANI 60
           MAER  K AA AGIGVRK KIFPHASSLASIESLSLPLVQEIV  ADIGCAECQKKLANI
Sbjct: 1   MAERPNKTAAAAGIGVRKLKIFPHASSLASIESLSLPLVQEIVFAADIGCAECQKKLANI 60

Query: 61  LSKMNDTESVVVNLLDKKVILTRRLQIPSTCNDSPSKVSTIKRLLGSSFR 111
           L+KMNDTESVVVNLLDKKVILTR+LQIP+      S+ STIKRLLGSSFR
Sbjct: 61  LAKMNDTESVVVNLLDKKVILTRKLQIPT------SRASTIKRLLGSSFR 104

[Close]

BLAST of Tan0007528 vs. NCBI nr
Match: XP_023542320.1 (uncharacterized protein LOC111802252 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 5.9e-36
Identity = 93/111 (83.78%), Postives = 97/111 (87.39%), Query Frame = 0


Query: 1   MAER-GKKKAAPAGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCAECQKKLAN 60
           MAER  K  AA AGIGVRK KIFPHASSLASIESLSLPLVQEIV  ADIGCAECQKKLAN
Sbjct: 1   MAERPNKAAAAAAGIGVRKLKIFPHASSLASIESLSLPLVQEIVFAADIGCAECQKKLAN 60

Query: 61  ILSKMNDTESVVVNLLDKKVILTRRLQIPSTCNDSPSKVSTIKRLLGSSFR 111
           IL+KMNDTESVVVNLLDKKVILTR+LQIP+      S+VSTIKRLLGSSFR
Sbjct: 61  ILAKMNDTESVVVNLLDKKVILTRKLQIPT------SRVSTIKRLLGSSFR 105

[Close]

BLAST of Tan0007528 vs. ExPASy TrEMBL
Match: A0A6J1DB71 (uncharacterized protein LOC111018707 OS=Momordica charantia OX=3673 GN=LOC111018707 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.7e-39
Identity = 94/110 (85.45%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MAERGKKKAAPAGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCAECQKKLANI 60
           MAER KKKAA   IGVRK +IFPHASSLASIESLSLPLVQEIVLTADI C ECQ KLANI
Sbjct: 1   MAERAKKKAAV--IGVRKPRIFPHASSLASIESLSLPLVQEIVLTADIRCPECQNKLANI 60

Query: 61  LSKMNDTESVVVNLLDKKVILTRRLQIPSTCNDSPSKVSTIKRLLGSSFR 111
           LSK+NDTESVVVNLL+KKVILTRRLQ+PSTC++S SKV+TIKRLLGSSFR
Sbjct: 61  LSKINDTESVVVNLLEKKVILTRRLQVPSTCSNSSSKVATIKRLLGSSFR 108

[Close]

BLAST of Tan0007528 vs. ExPASy TrEMBL
Match: A0A6J1HUG9 (uncharacterized protein LOC111467567 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111467567 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.0e-37
Identity = 95/111 (85.59%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MAER-GKKKAAPAGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCAECQKKLAN 60
           MAER  K  AA AGIGVRK KIFPHASSLASIESLSLPLVQEIV TADIGCAECQKKLAN
Sbjct: 1   MAERPNKAAAAAAGIGVRKLKIFPHASSLASIESLSLPLVQEIVFTADIGCAECQKKLAN 60

Query: 61  ILSKMNDTESVVVNLLDKKVILTRRLQIPSTCNDSPSKVSTIKRLLGSSFR 111
           ILSKMNDTESVVVNLLDKKVILTR+LQIPS      S+VST+KRLLGSSFR
Sbjct: 61  ILSKMNDTESVVVNLLDKKVILTRKLQIPS------SRVSTVKRLLGSSFR 105

[Close]

BLAST of Tan0007528 vs. ExPASy TrEMBL
Match: A0A6J1G188 (uncharacterized protein LOC111449743 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111449743 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 90/109 (82.57%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MAERGKKKAAPAGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCAECQKKLANI 60
           MAER  K AA AGIGVRK KIFPHASSLAS+ESLSLPLVQEIV  ADIGCAECQKKLANI
Sbjct: 1   MAERPNKTAA-AGIGVRKLKIFPHASSLASVESLSLPLVQEIVFAADIGCAECQKKLANI 60

Query: 61  LSKMNDTESVVVNLLDKKVILTRRLQIPSTCNDSPSKVSTIKRLLGSSF 110
           L+KMNDTESVVVNLLDKKVILTR+LQI +      S+VSTIKRLLGSSF
Sbjct: 61  LAKMNDTESVVVNLLDKKVILTRKLQIQT------SRVSTIKRLLGSSF 102

[Close]

BLAST of Tan0007528 vs. ExPASy TrEMBL
Match: A0A0A0KT62 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608570 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.2e-32
Identity = 82/102 (80.39%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 9   AAPAGIGVRKQKIFPHASSLASIESLSLPLVQEIVLTADIGCAECQKKLANILSKMNDTE 68
           A   GIGVRK++IFPHASSLASIESL+LPLVQEIVLTADIGCAECQKKLANILSKMNDTE
Sbjct: 3   AVVVGIGVRKKRIFPHASSLASIESLTLPLVQEIVLTADIGCAECQKKLANILSKMNDTE 62

Query: 69  SVVVNLLDKKVILTRRLQIPSTCNDSPSKVSTIKRLLGSSFR 111
           SVVVNLLDKKVILTRR QI       PS+VSTI+RL  S  R
Sbjct: 63  SVVVNLLDKKVILTRRSQI-------PSRVSTIRRLFASPCR 97

[Close]

BLAST of Tan0007528 vs. ExPASy TrEMBL
Match: A0A6J1G176 (uncharacterized protein LOC111449743 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449743 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-30
Identity = 90/136 (66.18%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 1   MAERGKKKAAPAGIGVRKQKIFPHASSLASIESLSLPL---------------------- 60
           MAER  K AA AGIGVRK KIFPHASSLAS+ESLSLPL                      
Sbjct: 1   MAERPNKTAA-AGIGVRKLKIFPHASSLASVESLSLPLVSAFSLYLRRFSSSPAEINALW 60

Query: 61  -----VQEIVLTADIGCAECQKKLANILSKMNDTESVVVNLLDKKVILTRRLQIPSTCND 110
                VQEIV  ADIGCAECQKKLANIL+KMNDTESVVVNLLDKKVILTR+LQI +    
Sbjct: 61  SVILQVQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIQT---- 120

[Close]

BLAST of Tan0007528 vs. TAIR 10
Match: AT1G68585.1 (unknown protein; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 8.8e-14
Identity = 43/86 (50.00%), Postives = 65/86 (75.58%), Query Frame = 0


Query: 26  SSLASIESLSLPLVQEIVLTADIGCAECQKKLANILSKMNDTESVVVNLLDKKVILT--- 85
           +SLAS+ SLS+PL+QEIVL+ADI C++CQ+K+A+I+++M +T S++V++L+KKV LT   
Sbjct: 26  TSLASVASLSMPLIQEIVLSADIRCSDCQEKVADIMARMIETYSILVSVLEKKVTLTCTY 85

Query: 86  ---RRLQIPSTCNDSPSKVSTIKRLL 106
              RR+   S       K+STIKRL+
Sbjct: 86  SGDRRVS-KSYGEALLCKISTIKRLI 110

[Close]

BLAST of Tan0007528 vs. TAIR 10
Match: AT2G35730.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 31/88 (35.23%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 27  SLASIESLSLPLVQEIVLTADIGCAECQKKLANILSKMNDTESVVVNLLDKKV------- 86
           +L   E LSLP  Q I + AD+GC  CQ +++ I+SKM   E  VV+L  K V       
Sbjct: 10  TLMLCEKLSLPSFQVIEINADVGCVACQDRVSKIVSKMTGIEEYVVDLKKKLVMARGDFR 69

Query: 87  --ILTRRLQIPSTCNDSPSKVSTIKRLL 106
             +++ + Q+    + +PS+    KRLL
Sbjct: 70  PRLVSSQQQVKDVVSQTPSQ--NAKRLL 95

The following BLAST results are available for this feature:

BLAST of Tan0007528 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0007528 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150612.1	5.7e-39	85.45	uncharacterized protein LOC111018707 [Momordica charantia]	[more]
KAG7013033.1	3.1e-37	84.55	hypothetical protein SDJN02_25789 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022968296.1	4.1e-37	85.59	uncharacterized protein LOC111467567 isoform X3 [Cucurbita maxima]	[more]
KAG6573976.1	9.0e-37	83.64	hypothetical protein SDJN03_27863, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023542320.1	5.9e-36	83.78	uncharacterized protein LOC111802252 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0007528 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DB71	2.7e-39	85.45	uncharacterized protein LOC111018707 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1HUG9	2.0e-37	85.59	uncharacterized protein LOC111467567 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G188	1.2e-34	82.57	uncharacterized protein LOC111449743 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0KT62	7.2e-32	80.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608570 PE=4 SV=1	[more]
A0A6J1G176	3.0e-30	66.18	uncharacterized protein LOC111449743 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Tan0007528 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68585.1	8.8e-14	50.00	unknown protein; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bact...	[more]
AT2G35730.1	1.1e-05	35.23	Heavy metal transport/detoxification superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.100		coord: 66..132 e-value: 4.1E-5 score: 25.7
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 70..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007528.1	Tan0007528.1	mRNA
Tan0007528.2	Tan0007528.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding