Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCAAAATAGAGAAAAAATGGCAGACAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGCCAGTGATAAAACTCACTGCATTCCTCCGCCTCTGCCTCGCTCGCCGCCAACCTTCTCGACGGCTGCGATCATTCAGTTCCGACGATCGGACGGTAGGGCTACGGAGTTTCTTGGAAGACAAGATACTTGTTCAGAATTGTTCTGTGAGAAAGCTTGAACGTGCTTCATCGAGTTCAAGCTATGTAAATTTCGAAGACGATGTCGATAAGCGATCTCAGATCTTCATCGATAATTTTCGGCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTACTGTAGAATTAATAGCTCTGAAACGGAGTATGAAGAGAGATCGCCGCCGTGTTCGTCGATTCGATGAACAAAATTATTTTAGAAATCGAAGTGAATTGCTG
mRNA sequence
TCCAAAATAGAGAAAAAATGGCAGACAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGCCAGTGATAAAACTCACTGCATTCCTCCGCCTCTGCCTCGCTCGCCGCCAACCTTCTCGACGGCTGCGATCATTCAGTTCCGACGATCGGACGGTAGGGCTACGGAGTTTCTTGGAAGACAAGATACTTGTTCAGAATTGTTCTGTGAGAAAGCTTGAACGTGCTTCATCGAGTTCAAGCTATGTAAATTTCGAAGACGATGTCGATAAGCGATCTCAGATCTTCATCGATAATTTTCGGCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTACTGTAGAATTAATAGCTCTGAAACGGAGTATGAAGAGAGATCGCCGCCGTGTTCGTCGATTCGATGAACAAAATTATTTTAGAAATCGAAGTGAATTGCTG
Coding sequence (CDS)
ATGGCAGACAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGCCAGTGATAAAACTCACTGCATTCCTCCGCCTCTGCCTCGCTCGCCGCCAACCTTCTCGACGGCTGCGATCATTCAGTTCCGACGATCGGACGGTAGGGCTACGGAGTTTCTTGGAAGACAAGATACTTGTTCAGAATTGTTCTGTGAGAAAGCTTGAACGTGCTTCATCGAGTTCAAGCTATGTAAATTTCGAAGACGATGTCGATAAGCGATCTCAGATCTTCATCGATAATTTTCGGCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTACTGTAGAATTAATAGCTCTGAAACGGAGTATGAAGAGAGATCGCCGCCGTGTTCGTCGATTCGATGA
Protein sequence
MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSFSSDDRTVGLRSFLEDKILVQNCSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETEYEERSPPCSSIR
Homology
BLAST of Tan0007010 vs. NCBI nr
Match:
KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 109/130 (83.85%), Postives = 116/130 (89.23%), Query Frame = 0
Query: 1 MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSFSSDDRTVGLRSFLEDKILVQN 60
MA KKSPLLFRLKK IKLTAFLRLC+ARRQ SRRLRSF SDDRT GLRSFLED+ +V+N
Sbjct: 1 MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLRSFLEDERIVEN 60
Query: 61 CSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETEYE 120
SVRKLERA SS+SYVNFEDDVDKRSQIFID F RQLRLERQISLQLRYCR+NSSETE E
Sbjct: 61 RSVRKLERA-SSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESE 120
Query: 121 ERSPPCSSIR 131
E+SPP SIR
Sbjct: 121 EKSPPYPSIR 129
BLAST of Tan0007010 vs. NCBI nr
Match:
XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])
HSP 1 Score: 169.9 bits (429), Expect = 1.5e-38
Identity = 101/137 (73.72%), Postives = 112/137 (81.75%), Query Frame = 0
Query: 1 MADKKSPLLFRLKKPVIKLTAFLR----LCLARRQPSRRLRSFSSDDRTVGLRSFLEDKI 60
MA+KKSPL+ RLKK V K+TA LR LCLARR+PS RLRSFS DRTVGLRSFLED+
Sbjct: 1 MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60
Query: 61 LVQNCSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSE 120
+ +NCS+R+LERA SS Y N EDDVDKRSQIFIDNF R+LRLERQISLQLRY RINSS
Sbjct: 61 IGENCSMRRLERA-SSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSG 120
Query: 121 TEYEERS---PPCSSIR 131
TE EERS PPCSSI+
Sbjct: 121 TEDEERSPPPPPCSSIQ 136
BLAST of Tan0007010 vs. NCBI nr
Match:
KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 151.4 bits (381), Expect = 5.5e-33
Identity = 83/128 (64.84%), Postives = 100/128 (78.12%), Query Frame = 0
Query: 1 MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSFSSDDRTVGLRSFLEDKILVQN 60
MA+ +P++ R+KK + KLTAF+RLC R PSRR+RSF SD RT GLRS L D+ +V+
Sbjct: 1 MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60
Query: 61 CSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETEYE 120
CSVRKLER SS + + EDDVD+R+QIFIDNFRRQL LERQISL+LRY INSSE +YE
Sbjct: 61 CSVRKLERGESSRN-GSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYE 120
Query: 121 ERSPPCSS 129
RSPP SS
Sbjct: 121 ARSPPFSS 127
BLAST of Tan0007010 vs. NCBI nr
Match:
KAG6577759.1 (hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 149.1 bits (375), Expect = 2.7e-32
Identity = 82/128 (64.06%), Postives = 99/128 (77.34%), Query Frame = 0
Query: 1 MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSFSSDDRTVGLRSFLEDKILVQN 60
MA+ +P++ R+KK + KLTAF+RLC R PSRR+RSF SD RT GLRS L D+ +V+
Sbjct: 1 MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60
Query: 61 CSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETEYE 120
CSVRKLER SS + + EDDVD+R+QIFIDNFRRQL LERQISL+L Y INSSE +YE
Sbjct: 61 CSVRKLERGESSRN-GSCEDDVDQRAQIFIDNFRRQLMLERQISLKLMYYGINSSEIDYE 120
Query: 121 ERSPPCSS 129
RSPP SS
Sbjct: 121 ARSPPFSS 127
BLAST of Tan0007010 vs. NCBI nr
Match:
KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])
HSP 1 Score: 148.7 bits (374), Expect = 3.6e-32
Identity = 84/129 (65.12%), Postives = 102/129 (79.07%), Query Frame = 0
Query: 1 MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSFSSDDRTVGLRSFLEDKI-LVQ 60
MA+KKSP+ RLKK +IKLTA +RLCL R+ S+RL SF SDDR VG+R LED+ + +
Sbjct: 1 MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60
Query: 61 NCSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETEY 120
N RKLERA SSS Y +E+DVD+R++IFI+NFRRQLRLERQISLQLRY R+NS ETEY
Sbjct: 61 NSFARKLERA-SSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120
Query: 121 EERSPPCSS 129
E+ SPP S
Sbjct: 121 EQISPPSIS 128
BLAST of Tan0007010 vs. ExPASy TrEMBL
Match:
A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)
HSP 1 Score: 169.9 bits (429), Expect = 7.2e-39
Identity = 101/137 (73.72%), Postives = 112/137 (81.75%), Query Frame = 0
Query: 1 MADKKSPLLFRLKKPVIKLTAFLR----LCLARRQPSRRLRSFSSDDRTVGLRSFLEDKI 60
MA+KKSPL+ RLKK V K+TA LR LCLARR+PS RLRSFS DRTVGLRSFLED+
Sbjct: 1 MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60
Query: 61 LVQNCSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSE 120
+ +NCS+R+LERA SS Y N EDDVDKRSQIFIDNF R+LRLERQISLQLRY RINSS
Sbjct: 61 IGENCSMRRLERA-SSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSG 120
Query: 121 TEYEERS---PPCSSIR 131
TE EERS PPCSSI+
Sbjct: 121 TEDEERSPPPPPCSSIQ 136
BLAST of Tan0007010 vs. ExPASy TrEMBL
Match:
A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 1.7e-32
Identity = 84/129 (65.12%), Postives = 102/129 (79.07%), Query Frame = 0
Query: 1 MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSFSSDDRTVGLRSFLEDKI-LVQ 60
MA+KKSP+ RLKK +IKLTA +RLCL R+ S+RL SF SDDR VG+R LED+ + +
Sbjct: 1 MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60
Query: 61 NCSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETEY 120
N RKLERA SSS Y +E+DVD+R++IFI+NFRRQLRLERQISLQLRY R+NS ETEY
Sbjct: 61 NSFARKLERA-SSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120
Query: 121 EERSPPCSS 129
E+ SPP S
Sbjct: 121 EQISPPSIS 128
BLAST of Tan0007010 vs. ExPASy TrEMBL
Match:
A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)
HSP 1 Score: 141.4 bits (355), Expect = 2.7e-30
Identity = 83/126 (65.87%), Postives = 100/126 (79.37%), Query Frame = 0
Query: 1 MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSF-SSDDRTVGLRSFLEDKILVQ 60
MA+KKSP+ RL+K ++KL A LRLCL RQ SRRL SF S DD+ VG+R LED+ +
Sbjct: 1 MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60
Query: 61 NCS-VRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETE 120
S VRKLERA SSS Y +E+DVD+R++IFI+NFRRQLRLERQISLQLRY R+NS ETE
Sbjct: 61 ESSFVRKLERA-SSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETE 120
Query: 121 YEERSP 125
YE+RSP
Sbjct: 121 YEQRSP 125
BLAST of Tan0007010 vs. ExPASy TrEMBL
Match:
A0A6J1CVX6 (ELL-associated factor 1-like OS=Momordica charantia OX=3673 GN=LOC111014779 PE=4 SV=1)
HSP 1 Score: 90.9 bits (224), Expect = 4.3e-15
Identity = 71/146 (48.63%), Postives = 86/146 (58.90%), Query Frame = 0
Query: 1 MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSFSSDDRTVGLRSFLEDKIL--- 60
M +KK LFRLKK + K T LRL LARR PS RLRS + DRTV R + L
Sbjct: 1 MGEKKWGALFRLKKVLRKFTVLLRLHLARRLPSHRLRSSAFGDRTVRPRPVPPPQPLPPP 60
Query: 61 ------VQNCSVRKLE----RASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQL 120
+ + + + R + SY EDDVD+R+Q FID+FR +L LERQIS QL
Sbjct: 61 PPPPPPPPSYGIIEYDVDDSRPPMTQSYEIVEDDVDERAQKFIDDFRSRLWLERQISRQL 120
Query: 121 R-YCRINSSETEYEERSPPC--SSIR 131
R Y R +SSETEYE+ SPP SSIR
Sbjct: 121 RYYYRSSSSETEYEDGSPPSPRSSIR 146
BLAST of Tan0007010 vs. ExPASy TrEMBL
Match:
A0A1R3J730 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1)
HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 59/126 (46.83%), Postives = 74/126 (58.73%), Query Frame = 0
Query: 1 MADKKSPLLFRLKKPVIKLTAFLRL--------CLARRQPSRRLRSFSSDDRTVGLRSFL 60
M + +L R KK V KL + L L C RR R + S +DR +GL SFL
Sbjct: 1 MGREDGSILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGRWRPTLSFNDR-LGLHSFL 60
Query: 61 EDKILVQNCSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRI 119
ED+ SVR L+R SY +DDVDKR++IFI NFRRQL LERQ+SL+LRYCR
Sbjct: 61 EDEETNGRSSVRALQRV---RSYGAGDDDVDKRAEIFISNFRRQLWLERQVSLELRYCRT 120
BLAST of Tan0007010 vs. TAIR 10
Match:
AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 23/46 (50.00%), Postives = 36/46 (78.26%), Query Frame = 0
Query: 79 EDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETEYEERSP 125
++D+D ++++FI NF RQL++ERQISL+L+YC+ N+ Y RSP
Sbjct: 87 DEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSFNY--RSP 130
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6596691.1 | 1.3e-47 | 83.85 | hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022145292.1 | 1.5e-38 | 73.72 | uncharacterized protein LOC111014780 [Momordica charantia] | [more] |
| KAG7015798.1 | 5.5e-33 | 64.84 | hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6577759.1 | 2.7e-32 | 64.06 | hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAA0052985.1 | 3.6e-32 | 65.12 | hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1CW64 | 7.2e-39 | 73.72 | uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014... | [more] |
| A0A5D3CHZ5 | 1.7e-32 | 65.12 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A0A0L4Z8 | 2.7e-30 | 65.87 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1 | [more] |
| A0A6J1CVX6 | 4.3e-15 | 48.63 | ELL-associated factor 1-like OS=Momordica charantia OX=3673 GN=LOC111014779 PE=4... | [more] |
| A0A1R3J730 | 1.8e-13 | 46.83 | Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G57510.1 | 2.1e-06 | 50.00 | unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact... | [more] |
