Tan0007010 (gene) Snake gourd v1

Overview


Name	Tan0007010
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ELL-associated factor 1-like
Location	LG01: 27100131 .. 27100574 (+)
RNA-Seq Expression	Tan0007010
Synteny	Tan0007010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAAAATAGAGAAAAAATGGCAGACAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGCCAGTGATAAAACTCACTGCATTCCTCCGCCTCTGCCTCGCTCGCCGCCAACCTTCTCGACGGCTGCGATCATTCAGTTCCGACGATCGGACGGTAGGGCTACGGAGTTTCTTGGAAGACAAGATACTTGTTCAGAATTGTTCTGTGAGAAAGCTTGAACGTGCTTCATCGAGTTCAAGCTATGTAAATTTCGAAGACGATGTCGATAAGCGATCTCAGATCTTCATCGATAATTTTCGGCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTACTGTAGAATTAATAGCTCTGAAACGGAGTATGAAGAGAGATCGCCGCCGTGTTCGTCGATTCGATGAACAAAATTATTTTAGAAATCGAAGTGAATTGCTG

mRNA sequence

TCCAAAATAGAGAAAAAATGGCAGACAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGCCAGTGATAAAACTCACTGCATTCCTCCGCCTCTGCCTCGCTCGCCGCCAACCTTCTCGACGGCTGCGATCATTCAGTTCCGACGATCGGACGGTAGGGCTACGGAGTTTCTTGGAAGACAAGATACTTGTTCAGAATTGTTCTGTGAGAAAGCTTGAACGTGCTTCATCGAGTTCAAGCTATGTAAATTTCGAAGACGATGTCGATAAGCGATCTCAGATCTTCATCGATAATTTTCGGCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTACTGTAGAATTAATAGCTCTGAAACGGAGTATGAAGAGAGATCGCCGCCGTGTTCGTCGATTCGATGAACAAAATTATTTTAGAAATCGAAGTGAATTGCTG

Coding sequence (CDS)

ATGGCAGACAAGAAATCGCCATTGCTATTCCGCCTGAAGAAGCCAGTGATAAAACTCACTGCATTCCTCCGCCTCTGCCTCGCTCGCCGCCAACCTTCTCGACGGCTGCGATCATTCAGTTCCGACGATCGGACGGTAGGGCTACGGAGTTTCTTGGAAGACAAGATACTTGTTCAGAATTGTTCTGTGAGAAAGCTTGAACGTGCTTCATCGAGTTCAAGCTATGTAAATTTCGAAGACGATGTCGATAAGCGATCTCAGATCTTCATCGATAATTTTCGGCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTACTGTAGAATTAATAGCTCTGAAACGGAGTATGAAGAGAGATCGCCGCCGTGTTCGTCGATTCGATGA

Protein sequence

MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSFSSDDRTVGLRSFLEDKILVQNCSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETEYEERSPPCSSIR

Homology

[Close]

BLAST of Tan0007010 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 109/130 (83.85%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1   MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSFSSDDRTVGLRSFLEDKILVQN 60
           MA KKSPLLFRLKK  IKLTAFLRLC+ARRQ SRRLRSF SDDRT GLRSFLED+ +V+N
Sbjct: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLRSFLEDERIVEN 60

Query: 61  CSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETEYE 120
            SVRKLERA SS+SYVNFEDDVDKRSQIFID F RQLRLERQISLQLRYCR+NSSETE E
Sbjct: 61  RSVRKLERA-SSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESE 120

Query: 121 ERSPPCSSIR 131
           E+SPP  SIR
Sbjct: 121 EKSPPYPSIR 129

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BLAST of Tan0007010 vs. NCBI nr
Match: XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])

HSP 1 Score: 169.9 bits (429), Expect = 1.5e-38
Identity = 101/137 (73.72%), Postives = 112/137 (81.75%), Query Frame = 0


Query: 1   MADKKSPLLFRLKKPVIKLTAFLR----LCLARRQPSRRLRSFSSDDRTVGLRSFLEDKI 60
           MA+KKSPL+ RLKK V K+TA LR    LCLARR+PS RLRSFS  DRTVGLRSFLED+ 
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60

Query: 61  LVQNCSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSE 120
           + +NCS+R+LERA SS  Y N EDDVDKRSQIFIDNF R+LRLERQISLQLRY RINSS 
Sbjct: 61  IGENCSMRRLERA-SSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSG 120

Query: 121 TEYEERS---PPCSSIR 131
           TE EERS   PPCSSI+
Sbjct: 121 TEDEERSPPPPPCSSIQ 136

[Close]

BLAST of Tan0007010 vs. NCBI nr
Match: KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 5.5e-33
Identity = 83/128 (64.84%), Postives = 100/128 (78.12%), Query Frame = 0


Query: 1   MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSFSSDDRTVGLRSFLEDKILVQN 60
           MA+  +P++ R+KK + KLTAF+RLC   R PSRR+RSF SD RT GLRS L D+ +V+ 
Sbjct: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60

Query: 61  CSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETEYE 120
           CSVRKLER  SS +  + EDDVD+R+QIFIDNFRRQL LERQISL+LRY  INSSE +YE
Sbjct: 61  CSVRKLERGESSRN-GSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYE 120

Query: 121 ERSPPCSS 129
            RSPP SS
Sbjct: 121 ARSPPFSS 127

[Close]

BLAST of Tan0007010 vs. NCBI nr
Match: KAG6577759.1 (hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.1 bits (375), Expect = 2.7e-32
Identity = 82/128 (64.06%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 1   MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSFSSDDRTVGLRSFLEDKILVQN 60
           MA+  +P++ R+KK + KLTAF+RLC   R PSRR+RSF SD RT GLRS L D+ +V+ 
Sbjct: 1   MAENATPVVLRMKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEK 60

Query: 61  CSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETEYE 120
           CSVRKLER  SS +  + EDDVD+R+QIFIDNFRRQL LERQISL+L Y  INSSE +YE
Sbjct: 61  CSVRKLERGESSRN-GSCEDDVDQRAQIFIDNFRRQLMLERQISLKLMYYGINSSEIDYE 120

Query: 121 ERSPPCSS 129
            RSPP SS
Sbjct: 121 ARSPPFSS 127

[Close]

BLAST of Tan0007010 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-32
Identity = 84/129 (65.12%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSFSSDDRTVGLRSFLEDKI-LVQ 60
           MA+KKSP+  RLKK +IKLTA +RLCL  R+ S+RL SF SDDR VG+R  LED+  + +
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60

Query: 61  NCSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETEY 120
           N   RKLERA SSS Y  +E+DVD+R++IFI+NFRRQLRLERQISLQLRY R+NS ETEY
Sbjct: 61  NSFARKLERA-SSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EERSPPCSS 129
           E+ SPP  S
Sbjct: 121 EQISPPSIS 128

[Close]

BLAST of Tan0007010 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 7.2e-39
Identity = 101/137 (73.72%), Postives = 112/137 (81.75%), Query Frame = 0


Query: 1   MADKKSPLLFRLKKPVIKLTAFLR----LCLARRQPSRRLRSFSSDDRTVGLRSFLEDKI 60
           MA+KKSPL+ RLKK V K+TA LR    LCLARR+PS RLRSFS  DRTVGLRSFLED+ 
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEE 60

Query: 61  LVQNCSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSE 120
           + +NCS+R+LERA SS  Y N EDDVDKRSQIFIDNF R+LRLERQISLQLRY RINSS 
Sbjct: 61  IGENCSMRRLERA-SSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSG 120

Query: 121 TEYEERS---PPCSSIR 131
           TE EERS   PPCSSI+
Sbjct: 121 TEDEERSPPPPPCSSIQ 136

[Close]

BLAST of Tan0007010 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.7e-32
Identity = 84/129 (65.12%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSFSSDDRTVGLRSFLEDKI-LVQ 60
           MA+KKSP+  RLKK +IKLTA +RLCL  R+ S+RL SF SDDR VG+R  LED+  + +
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAE 60

Query: 61  NCSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETEY 120
           N   RKLERA SSS Y  +E+DVD+R++IFI+NFRRQLRLERQISLQLRY R+NS ETEY
Sbjct: 61  NSFARKLERA-SSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EERSPPCSS 129
           E+ SPP  S
Sbjct: 121 EQISPPSIS 128

[Close]

BLAST of Tan0007010 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.7e-30
Identity = 83/126 (65.87%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 1   MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSF-SSDDRTVGLRSFLEDKILVQ 60
           MA+KKSP+  RL+K ++KL A LRLCL  RQ SRRL SF S DD+ VG+R  LED+  + 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  NCS-VRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETE 120
             S VRKLERA SSS Y  +E+DVD+R++IFI+NFRRQLRLERQISLQLRY R+NS ETE
Sbjct: 61  ESSFVRKLERA-SSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETE 120

Query: 121 YEERSP 125
           YE+RSP
Sbjct: 121 YEQRSP 125

[Close]

BLAST of Tan0007010 vs. ExPASy TrEMBL
Match: A0A6J1CVX6 (ELL-associated factor 1-like OS=Momordica charantia OX=3673 GN=LOC111014779 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-15
Identity = 71/146 (48.63%), Postives = 86/146 (58.90%), Query Frame = 0


Query: 1   MADKKSPLLFRLKKPVIKLTAFLRLCLARRQPSRRLRSFSSDDRTVGLRSFLEDKIL--- 60
           M +KK   LFRLKK + K T  LRL LARR PS RLRS +  DRTV  R     + L   
Sbjct: 1   MGEKKWGALFRLKKVLRKFTVLLRLHLARRLPSHRLRSSAFGDRTVRPRPVPPPQPLPPP 60

Query: 61  ------VQNCSVRKLE----RASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQL 120
                   +  + + +    R   + SY   EDDVD+R+Q FID+FR +L LERQIS QL
Sbjct: 61  PPPPPPPPSYGIIEYDVDDSRPPMTQSYEIVEDDVDERAQKFIDDFRSRLWLERQISRQL 120

Query: 121 R-YCRINSSETEYEERSPPC--SSIR 131
           R Y R +SSETEYE+ SPP   SSIR
Sbjct: 121 RYYYRSSSSETEYEDGSPPSPRSSIR 146

[Close]

BLAST of Tan0007010 vs. ExPASy TrEMBL
Match: A0A1R3J730 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 59/126 (46.83%), Postives = 74/126 (58.73%), Query Frame = 0


Query: 1   MADKKSPLLFRLKKPVIKLTAFLRL--------CLARRQPSRRLRSFSSDDRTVGLRSFL 60
           M  +   +L R KK V KL + L L        C  RR   R   + S +DR +GL SFL
Sbjct: 1   MGREDGSILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGRWRPTLSFNDR-LGLHSFL 60

Query: 61  EDKILVQNCSVRKLERASSSSSYVNFEDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRI 119
           ED+      SVR L+R     SY   +DDVDKR++IFI NFRRQL LERQ+SL+LRYCR 
Sbjct: 61  EDEETNGRSSVRALQRV---RSYGAGDDDVDKRAEIFISNFRRQLWLERQVSLELRYCRT 120

[Close]

BLAST of Tan0007010 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 23/46 (50.00%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 79  EDDVDKRSQIFIDNFRRQLRLERQISLQLRYCRINSSETEYEERSP 125
           ++D+D ++++FI NF RQL++ERQISL+L+YC+ N+    Y  RSP
Sbjct: 87  DEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSFNY--RSP 130

The following BLAST results are available for this feature:

BLAST of Tan0007010 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0007010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596691.1	1.3e-47	83.85	hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022145292.1	1.5e-38	73.72	uncharacterized protein LOC111014780 [Momordica charantia]	[more]
KAG7015798.1	5.5e-33	64.84	hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577759.1	2.7e-32	64.06	hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0052985.1	3.6e-32	65.12	hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144...	[more]

BLAST of Tan0007010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CW64	7.2e-39	73.72	uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A5D3CHZ5	1.7e-32	65.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L4Z8	2.7e-30	65.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1	[more]
A0A6J1CVX6	4.3e-15	48.63	ELL-associated factor 1-like OS=Momordica charantia OX=3673 GN=LOC111014779 PE=4...	[more]
A0A1R3J730	1.8e-13	46.83	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1	[more]

BLAST of Tan0007010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57510.1	2.1e-06	50.00	unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 79..111 e-value: 9.8E-8 score: 31.4
None	No IPR available	PANTHER	PTHR33098	COTTON FIBER (DUF761)	coord: 6..118
None	No IPR available	PANTHER	PTHR33098:SF64	OS08G0448100 PROTEIN	coord: 6..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007010.1	Tan0007010.1	mRNA