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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. GTATGAGATTATTTATGAGACTAAATTTATAATTTAACATAAATTTAACTAAGCATTAAAAAAGACGAAAATACAATATTATACTATTTACAAAGGAAAAAAAAATCTTAATTTCTTTTATCACATCAAAGAAATTTCAGGTGCAGAAATGGAAAGTAAAATCGACACAAATCCTTCGGCTATTGCAATAAAAAATGCAGTGATAGATAGTGGAATTCAAAATGAAAAAAAATTACTGTGGTATGTAATAAGCTTCACGAATGCGAAAACAGGGACAGAAGCATCGAATTAACCTAACCCCCAAATCACCAACACAACCGAAAACCGCGAAGCTTCTGGATCTCTCTCTTCTGTAACTGCTTTGCACCATGATCGGAACTCCGTACACCGGATTCCGAGCCATGTATTGCTGGTACGACGGATCAGCCACAAGCGGCGCTGCGATTTCACCTTCCGCGGTCGCTCGTGGAGGCGATCGAACTTCTTCCGGATCTTCTAGCCATGGCGGAAGTGGCGGAGCTGAGGGCTGGATTGCGGTTGCGGAGGAGCAGGGGCGAGTGCAGCAGTGCCAGTGGCACGGCGGCGGAGGCGGAGGCGGACGGTAAAGGTACGGATTATGGATTTTCTTTCGCTTCTTGTTTTTAGACCAAAATTTGAGTTTCTTCTTGGCGGCCTTGAGCATTGTTGGATCTGTGATTTGTGATTTGAGGAGGAGGAGGAGGAGATTGGCTATGGAGTCTTTGAGAAAAGGAGGATTGATTGCATCTTTTCAAATCTTCTTACCGTT mRNA sequence GTATGAGATTATTTATGAGACTAAATTTATAATTTAACATAAATTTAACTAAGCATTAAAAAAGACGAAAATACAATATTATACTATTTACAAAGGAAAAAAAAATCTTAATTTCTTTTATCACATCAAAGAAATTTCAGGTGCAGAAATGGAAAGTAAAATCGACACAAATCCTTCGGCTATTGCAATAAAAAATGCAGTGATAGATAGTGGAATTCAAAATGAAAAAAAATTACTGTGGTATGTAATAAGCTTCACGAATGCGAAAACAGGGACAGAAGCATCGAATTAACCTAACCCCCAAATCACCAACACAACCGAAAACCGCGAAGCTTCTGGATCTCTCTCTTCTGTAACTGCTTTGCACCATGATCGGAACTCCGTACACCGGATTCCGAGCCATGTATTGCTGGTACGACGGATCAGCCACAAGCGGCGCTGCGATTTCACCTTCCGCGGTCGCTCGTGGAGGCGATCGAACTTCTTCCGGATCTTCTAGCCATGGCGGAAGTGGCGGAGCTGAGGGCTGGATTGCGGTTGCGGAGGAGCAGGGGCGAGTGCAGCAGTGCCAGTGGCACGGCGGCGGAGGCGGAGGCGGACGGTAAAGGTACGGATTATGGATTTTCTTTCGCTTCTTGTTTTTAGACCAAAATTTGAGTTTCTTCTTGGCGGCCTTGAGCATTGTTGGATCTGTGATTTGTGATTTGAGGAGGAGGAGGAGGAGATTGGCTATGGAGTCTTTGAGAAAAGGAGGATTGATTGCATCTTTTCAAATCTTCTTACCGTT Coding sequence (CDS) ATGATCGGAACTCCGTACACCGGATTCCGAGCCATGTATTGCTGGTACGACGGATCAGCCACAAGCGGCGCTGCGATTTCACCTTCCGCGGTCGCTCGTGGAGGCGATCGAACTTCTTCCGGATCTTCTAGCCATGGCGGAAGTGGCGGAGCTGAGGGCTGGATTGCGGTTGCGGAGGAGCAGGGGCGAGTGCAGCAGTGCCAGTGGCACGGCGGCGGAGGCGGAGGCGGACGGTAA Protein sequence MIGTPYTGFRAMYCWYDGSATSGAAISPSAVARGGDRTSSGSSSHGGSGGAEGWIAVAEEQGRVQQCQWHGGGGGGGR
Homology
BLAST of Tan0006715 vs. NCBI nr
Match: KAG7032441.1 (hypothetical protein SDJN02_06486, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 91.7 bits (226), Expect = 3.1e-15 Identity = 54/78 (69.23%), Postives = 60/78 (76.92%), Query Frame = 0
Query: 1 MIGTPYTGFRAMYCWYDGSATSGAAISPSAVARGGDRTSSGSSSHGGSGGAEGWIAVAEE 60
MIGTPYTG +MYCWY G+ATSGAAIS S+ GG + SSSHGGSGGAEGWI AEE
Sbjct: 170 MIGTPYTGSGSMYCWYSGAATSGAAISASSGCSGGGKIR--SSSHGGSGGAEGWI--AEE 229
Query: 61 QGRVQQCQWHGGGGGGGR 79
Q +VQ QW GGGGGGG+
Sbjct: 230 QWQVQ--QWQGGGGGGGK 241
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| KAG7032441.1 | 3.1e-15 | 69.23 | hypothetical protein SDJN02_06486, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 33..47 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 29..54 |
Relationships
The following mRNA feature(s) are a part of this gene:
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