Tan0006715 (gene) Snake gourd v1

Overview


Name	Tan0006715
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG11: 59161473 .. 59162259 (+)
RNA-Seq Expression	Tan0006715
Synteny	Tan0006715

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATGAGATTATTTATGAGACTAAATTTATAATTTAACATAAATTTAACTAAGCATTAAAAAAGACGAAAATACAATATTATACTATTTACAAAGGAAAAAAAAATCTTAATTTCTTTTATCACATCAAAGAAATTTCAGGTGCAGAAATGGAAAGTAAAATCGACACAAATCCTTCGGCTATTGCAATAAAAAATGCAGTGATAGATAGTGGAATTCAAAATGAAAAAAAATTACTGTGGTATGTAATAAGCTTCACGAATGCGAAAACAGGGACAGAAGCATCGAATTAACCTAACCCCCAAATCACCAACACAACCGAAAACCGCGAAGCTTCTGGATCTCTCTCTTCTGTAACTGCTTTGCACCATGATCGGAACTCCGTACACCGGATTCCGAGCCATGTATTGCTGGTACGACGGATCAGCCACAAGCGGCGCTGCGATTTCACCTTCCGCGGTCGCTCGTGGAGGCGATCGAACTTCTTCCGGATCTTCTAGCCATGGCGGAAGTGGCGGAGCTGAGGGCTGGATTGCGGTTGCGGAGGAGCAGGGGCGAGTGCAGCAGTGCCAGTGGCACGGCGGCGGAGGCGGAGGCGGACGGTAAAGGTACGGATTATGGATTTTCTTTCGCTTCTTGTTTTTAGACCAAAATTTGAGTTTCTTCTTGGCGGCCTTGAGCATTGTTGGATCTGTGATTTGTGATTTGAGGAGGAGGAGGAGGAGATTGGCTATGGAGTCTTTGAGAAAAGGAGGATTGATTGCATCTTTTCAAATCTTCTTACCGTT

mRNA sequence

GTATGAGATTATTTATGAGACTAAATTTATAATTTAACATAAATTTAACTAAGCATTAAAAAAGACGAAAATACAATATTATACTATTTACAAAGGAAAAAAAAATCTTAATTTCTTTTATCACATCAAAGAAATTTCAGGTGCAGAAATGGAAAGTAAAATCGACACAAATCCTTCGGCTATTGCAATAAAAAATGCAGTGATAGATAGTGGAATTCAAAATGAAAAAAAATTACTGTGGTATGTAATAAGCTTCACGAATGCGAAAACAGGGACAGAAGCATCGAATTAACCTAACCCCCAAATCACCAACACAACCGAAAACCGCGAAGCTTCTGGATCTCTCTCTTCTGTAACTGCTTTGCACCATGATCGGAACTCCGTACACCGGATTCCGAGCCATGTATTGCTGGTACGACGGATCAGCCACAAGCGGCGCTGCGATTTCACCTTCCGCGGTCGCTCGTGGAGGCGATCGAACTTCTTCCGGATCTTCTAGCCATGGCGGAAGTGGCGGAGCTGAGGGCTGGATTGCGGTTGCGGAGGAGCAGGGGCGAGTGCAGCAGTGCCAGTGGCACGGCGGCGGAGGCGGAGGCGGACGGTAAAGGTACGGATTATGGATTTTCTTTCGCTTCTTGTTTTTAGACCAAAATTTGAGTTTCTTCTTGGCGGCCTTGAGCATTGTTGGATCTGTGATTTGTGATTTGAGGAGGAGGAGGAGGAGATTGGCTATGGAGTCTTTGAGAAAAGGAGGATTGATTGCATCTTTTCAAATCTTCTTACCGTT

Coding sequence (CDS)

ATGATCGGAACTCCGTACACCGGATTCCGAGCCATGTATTGCTGGTACGACGGATCAGCCACAAGCGGCGCTGCGATTTCACCTTCCGCGGTCGCTCGTGGAGGCGATCGAACTTCTTCCGGATCTTCTAGCCATGGCGGAAGTGGCGGAGCTGAGGGCTGGATTGCGGTTGCGGAGGAGCAGGGGCGAGTGCAGCAGTGCCAGTGGCACGGCGGCGGAGGCGGAGGCGGACGGTAA

Protein sequence

MIGTPYTGFRAMYCWYDGSATSGAAISPSAVARGGDRTSSGSSSHGGSGGAEGWIAVAEEQGRVQQCQWHGGGGGGGR

Homology

[Close]

BLAST of Tan0006715 vs. NCBI nr
Match: KAG7032441.1 (hypothetical protein SDJN02_06486, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.7 bits (226), Expect = 3.1e-15
Identity = 54/78 (69.23%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1   MIGTPYTGFRAMYCWYDGSATSGAAISPSAVARGGDRTSSGSSSHGGSGGAEGWIAVAEE 60
           MIGTPYTG  +MYCWY G+ATSGAAIS S+   GG +    SSSHGGSGGAEGWI  AEE
Sbjct: 170 MIGTPYTGSGSMYCWYSGAATSGAAISASSGCSGGGKIR--SSSHGGSGGAEGWI--AEE 229

Query: 61  QGRVQQCQWHGGGGGGGR 79
           Q +VQ  QW GGGGGGG+
Sbjct: 230 QWQVQ--QWQGGGGGGGK 241

The following BLAST results are available for this feature:

BLAST of Tan0006715 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0006715 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032441.1	3.1e-15	69.23	hypothetical protein SDJN02_06486, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Tan0006715 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Tan0006715 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0006715.1	Tan0006715.1	mRNA