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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSexonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCATATGGGTGTGTTGAGTTGGGGTCCAGATTGCATCTTACAAGTCTTCACTCTCAGGGCAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCATCCATTAGCGCCCCCAGTTTGTATGGCGTGGTCAGTTCGAATTGTATCTCTGACTTGA mRNA sequence ATGCATATGGGTGTGTTGAGTTGGGGTCCAGATTGCATCTTACAAGTCTTCACTCTCAGGGCAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCATCCATTAGCGCCCCCAGTTTGTATGGCGTGGTCAGTTCGAATTGTATCTCTGACTTGA Coding sequence (CDS) ATGCATATGGGTGTGTTGAGTTGGGGTCCAGATTGCATCTTACAAGTCTTCACTCTCAGGGCAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCATCCATTAGCGCCCCCAGTTTGTATGGCGTGGTCAGTTCGAATTGTATCTCTGACTTGA Protein sequence MHMGVLSWGPDCILQVFTLRATGSCSLLVVTNSCIIMKALLTIALAASSRDLVCHGRSGRREHPLAPPVCMAWSVRIVSLT
Homology
BLAST of Tan0006007 vs. NCBI nr
Match: KGN49854.1 (hypothetical protein Csa_000509 [Cucumis sativus]) HSP 1 Score: 148.3 bits (373), Expect = 2.9e-32 Identity = 76/83 (91.57%), Postives = 77/83 (92.77%), Query Frame = 0 Query: 1 MHMGVLSWGPDCILQVFTLRATGSCSLLVVTNSCI--IMKALLTIALAASSRDLVCHGRS 60 MHMGVLSWGPDCILQVFTLR TGSCSLLVVTNSCI IMKALLTIALAASSRDLVCHGRS Sbjct: 1 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60
Query: 61 GRREHPLAPPVCMAWSVRIVSLT 82 GRRE PLAPPV +AWSV IVSLT Sbjct: 61 GRRERPLAPPVRLAWSVPIVSLT 83
BLAST of Tan0006007 vs. NCBI nr
Match: KAA0042542.1 (importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit beta-1 [Cucumis melo var. makuwa]) HSP 1 Score: 147.1 bits (370), Expect = 6.4e-32 Identity = 75/83 (90.36%), Postives = 77/83 (92.77%), Query Frame = 0 Query: 1 MHMGVLSWGPDCILQVFTLRATGSCSLLVVTNSCI--IMKALLTIALAASSRDLVCHGRS 60 MHMGVLSWGPDCILQVFTLR TGSCSLLVVTNSCI IMKALLTIALAASSRDLVCHGRS Sbjct: 865 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 924
Query: 61 GRREHPLAPPVCMAWSVRIVSLT 82 G+RE PLAPPV +AWSV IVSLT Sbjct: 925 GKRERPLAPPVRLAWSVPIVSLT 947
BLAST of Tan0006007 vs. ExPASy TrEMBL
Match: A0A0A0KLW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 1.4e-32 Identity = 76/83 (91.57%), Postives = 77/83 (92.77%), Query Frame = 0 Query: 1 MHMGVLSWGPDCILQVFTLRATGSCSLLVVTNSCI--IMKALLTIALAASSRDLVCHGRS 60 MHMGVLSWGPDCILQVFTLR TGSCSLLVVTNSCI IMKALLTIALAASSRDLVCHGRS Sbjct: 1 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60
Query: 61 GRREHPLAPPVCMAWSVRIVSLT 82 GRRE PLAPPV +AWSV IVSLT Sbjct: 61 GRRERPLAPPVRLAWSVPIVSLT 83
BLAST of Tan0006007 vs. ExPASy TrEMBL
Match: A0A5A7TGL2 (Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00380 PE=4 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 3.1e-32 Identity = 75/83 (90.36%), Postives = 77/83 (92.77%), Query Frame = 0 Query: 1 MHMGVLSWGPDCILQVFTLRATGSCSLLVVTNSCI--IMKALLTIALAASSRDLVCHGRS 60 MHMGVLSWGPDCILQVFTLR TGSCSLLVVTNSCI IMKALLTIALAASSRDLVCHGRS Sbjct: 865 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 924
Query: 61 GRREHPLAPPVCMAWSVRIVSLT 82 G+RE PLAPPV +AWSV IVSLT Sbjct: 925 GKRERPLAPPVRLAWSVPIVSLT 947
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KGN49854.1 | 2.9e-32 | 91.57 | hypothetical protein Csa_000509 [Cucumis sativus] | [more] |
KAA0042542.1 | 6.4e-32 | 90.36 | importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit ... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KLW1 | 1.4e-32 | 91.57 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1 | [more] |
A0A5A7TGL2 | 3.1e-32 | 90.36 | Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006606 |
protein import into nucleus |
cellular_component |
GO:0005737 |
cytoplasm |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0031267 |
small GTPase binding |
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