Tan0006007 (gene) Snake gourd v1

Overview
NameTan0006007
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionImportin subunit beta-1
LocationLG07: 8723040 .. 8723285 (-)
RNA-Seq ExpressionTan0006007
SyntenyTan0006007
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATATGGGTGTGTTGAGTTGGGGTCCAGATTGCATCTTACAAGTCTTCACTCTCAGGGCAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCATCCATTAGCGCCCCCAGTTTGTATGGCGTGGTCAGTTCGAATTGTATCTCTGACTTGA

mRNA sequence

ATGCATATGGGTGTGTTGAGTTGGGGTCCAGATTGCATCTTACAAGTCTTCACTCTCAGGGCAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCATCCATTAGCGCCCCCAGTTTGTATGGCGTGGTCAGTTCGAATTGTATCTCTGACTTGA

Coding sequence (CDS)

ATGCATATGGGTGTGTTGAGTTGGGGTCCAGATTGCATCTTACAAGTCTTCACTCTCAGGGCAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAGGAGGGAGCATCCATTAGCGCCCCCAGTTTGTATGGCGTGGTCAGTTCGAATTGTATCTCTGACTTGA

Protein sequence

MHMGVLSWGPDCILQVFTLRATGSCSLLVVTNSCIIMKALLTIALAASSRDLVCHGRSGRREHPLAPPVCMAWSVRIVSLT
Homology
[Close]
BLAST of Tan0006007 vs. NCBI nr
Match: KGN49854.1 (hypothetical protein Csa_000509 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 2.9e-32
Identity = 76/83 (91.57%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 1  MHMGVLSWGPDCILQVFTLRATGSCSLLVVTNSCI--IMKALLTIALAASSRDLVCHGRS 60
          MHMGVLSWGPDCILQVFTLR TGSCSLLVVTNSCI  IMKALLTIALAASSRDLVCHGRS
Sbjct: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60

Query: 61 GRREHPLAPPVCMAWSVRIVSLT 82
          GRRE PLAPPV +AWSV IVSLT
Sbjct: 61 GRRERPLAPPVRLAWSVPIVSLT 83

[Close]
BLAST of Tan0006007 vs. NCBI nr
Match: KAA0042542.1 (importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit beta-1 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 6.4e-32
Identity = 75/83 (90.36%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 1   MHMGVLSWGPDCILQVFTLRATGSCSLLVVTNSCI--IMKALLTIALAASSRDLVCHGRS 60
           MHMGVLSWGPDCILQVFTLR TGSCSLLVVTNSCI  IMKALLTIALAASSRDLVCHGRS
Sbjct: 865 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 924

Query: 61  GRREHPLAPPVCMAWSVRIVSLT 82
           G+RE PLAPPV +AWSV IVSLT
Sbjct: 925 GKRERPLAPPVRLAWSVPIVSLT 947

[Close]
BLAST of Tan0006007 vs. ExPASy TrEMBL
Match: A0A0A0KLW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-32
Identity = 76/83 (91.57%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 1  MHMGVLSWGPDCILQVFTLRATGSCSLLVVTNSCI--IMKALLTIALAASSRDLVCHGRS 60
          MHMGVLSWGPDCILQVFTLR TGSCSLLVVTNSCI  IMKALLTIALAASSRDLVCHGRS
Sbjct: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60

Query: 61 GRREHPLAPPVCMAWSVRIVSLT 82
          GRRE PLAPPV +AWSV IVSLT
Sbjct: 61 GRRERPLAPPVRLAWSVPIVSLT 83

[Close]
BLAST of Tan0006007 vs. ExPASy TrEMBL
Match: A0A5A7TGL2 (Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00380 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.1e-32
Identity = 75/83 (90.36%), Postives = 77/83 (92.77%), Query Frame = 0 

Query: 1   MHMGVLSWGPDCILQVFTLRATGSCSLLVVTNSCI--IMKALLTIALAASSRDLVCHGRS 60
           MHMGVLSWGPDCILQVFTLR TGSCSLLVVTNSCI  IMKALLTIALAASSRDLVCHGRS
Sbjct: 865 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 924

Query: 61  GRREHPLAPPVCMAWSVRIVSLT 82
           G+RE PLAPPV +AWSV IVSLT
Sbjct: 925 GKRERPLAPPVRLAWSVPIVSLT 947

The following BLAST results are available for this feature:
BLAST of Tan0006007 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0006007 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49854.12.9e-3291.57hypothetical protein Csa_000509 [Cucumis sativus][more]
KAA0042542.16.4e-3290.36importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit ... [more]
BLAST of Tan0006007 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLW11.4e-3291.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1[more]
A0A5A7TGL23.1e-3290.36Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Tan0006007 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0006007.1Tan0006007.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006606 protein import into nucleus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0031267 small GTPase binding