Tan0005683 (gene) Snake gourd v1

Overview


Name	Tan0005683
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	jacalin-related lectin 5-like
Location	LG10: 51107703 .. 51107894 (-)
RNA-Seq Expression	Tan0005683
Synteny	Tan0005683

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAACAAAAGTAGCAGTGGTGACAAAAGCAATAGTGGAAACCAACGTCAAGTTGATAACAAAAGTAGCCCTAAGAAAATGGTGGCTCCAGGGAGTGGAGGGAATTCTCATATCTCTCGAGATGGATTTGAGAAGGATCCTCAAACTTATTTTTCTAAACTTCATGCTGACGAAAAGAATAACAAGTAG

mRNA sequence

ATGGACAACAAAAGTAGCAGTGGTGACAAAAGCAATAGTGGAAACCAACGTCAAGTTGATAACAAAAGTAGCCCTAAGAAAATGGTGGCTCCAGGGAGTGGAGGGAATTCTCATATCTCTCGAGATGGATTTGAGAAGGATCCTCAAACTTATTTTTCTAAACTTCATGCTGACGAAAAGAATAACAAGTAG

Coding sequence (CDS)

ATGGACAACAAAAGTAGCAGTGGTGACAAAAGCAATAGTGGAAACCAACGTCAAGTTGATAACAAAAGTAGCCCTAAGAAAATGGTGGCTCCAGGGAGTGGAGGGAATTCTCATATCTCTCGAGATGGATTTGAGAAGGATCCTCAAACTTATTTTTCTAAACTTCATGCTGACGAAAAGAATAACAAGTAG

Protein sequence

MDNKSSSGDKSNSGNQRQVDNKSSPKKMVAPGSGGNSHISRDGFEKDPQTYFSKLHADEKNNK

Homology

[Close]

BLAST of Tan0005683 vs. NCBI nr
Match: XP_022951913.1 (jacalin-related lectin 5-like [Cucurbita moschata] >XP_023521144.1 jacalin-related lectin 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-07
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1  MDNKSSS-GDKSNSGNQRQVDN-----KSSPKKMVAPGSGGNSHISRDGFEKDPQTYFSK 60
          MD+KSSS G KSN+G+  Q  N      +S +KMVAPGSGG +HISRD FE +PQ YF+ 
Sbjct: 1  MDSKSSSGGSKSNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFAN 60

Query: 61 LHADEKNNK 64
          LHA EK+ K
Sbjct: 61 LHAAEKSQK 69

[Close]

BLAST of Tan0005683 vs. NCBI nr
Match: XP_022973282.1 (jacalin-related lectin 5-like [Cucurbita maxima])

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-06
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1  MDNKSSS-GDKSNSGNQRQVDN-----KSSPKKMVAPGSGGNSHISRDGFEKDPQTYFSK 60
          MD+KSSS G KSN G+  Q  N      +S  KMVAPGSGG +HISRD  E +PQ YF+ 
Sbjct: 1  MDSKSSSGGSKSNDGSAGQAHNSTRSGSNSSGKMVAPGSGGTAHISRDASESNPQGYFAN 60

Query: 61 LHADEKNNK 64
          LHA +KN K
Sbjct: 61 LHAAQKNQK 69

[Close]

BLAST of Tan0005683 vs. NCBI nr
Match: KAE8022802.1 (hypothetical protein FH972_008572 [Carpinus fangiana])

HSP 1 Score: 53.5 bits (127), Expect = 7.5e-04
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 28 MVAPGSGGNSHISRDGFEKDPQTYFSKLHADEKNNK 64
          MVAPGSGG +HISRD FE +PQ YFS LH+ EK  K
Sbjct: 48 MVAPGSGGGAHISRDTFESNPQGYFSGLHSTEKGTK 83

[Close]

BLAST of Tan0005683 vs. NCBI nr
Match: XP_018842977.1 (glycine-rich cell wall structural protein 1.0 [Juglans regia] >KAF5450984.1 hypothetical protein F2P56_031289 [Juglans regia])

HSP 1 Score: 53.1 bits (126), Expect = 9.8e-04
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 28  MVAPGSGGNSHISRDGFEKDPQTYFSKLHADEKNNK 64
           MVAPGSGG +HISR  FE +PQ YF+ LHA EK NK
Sbjct: 69  MVAPGSGGGAHISRGTFESNPQGYFAGLHAGEKGNK 104

[Close]

BLAST of Tan0005683 vs. NCBI nr
Match: CAA7032866.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 53.1 bits (126), Expect = 9.8e-04
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 23  SSPKKMVAPGSGGNSHISRDGFEKDPQTYFSKLHADEKNNK 64
           S+P  MVAPGSGG+++ISRD FE + + YF  LHA+EK NK
Sbjct: 124 STPVNMVAPGSGGSANISRDAFEANTKAYFDNLHANEKANK 164

[Close]

BLAST of Tan0005683 vs. ExPASy TrEMBL
Match: A0A6J1GJ19 (jacalin-related lectin 5-like OS=Cucurbita moschata OX=3662 GN=LOC111454653 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-07
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1  MDNKSSS-GDKSNSGNQRQVDN-----KSSPKKMVAPGSGGNSHISRDGFEKDPQTYFSK 60
          MD+KSSS G KSN+G+  Q  N      +S +KMVAPGSGG +HISRD FE +PQ YF+ 
Sbjct: 1  MDSKSSSGGSKSNNGSAGQAHNSTRSGSNSSEKMVAPGSGGAAHISRDAFESNPQGYFAN 60

Query: 61 LHADEKNNK 64
          LHA EK+ K
Sbjct: 61 LHAAEKSQK 69

[Close]

BLAST of Tan0005683 vs. ExPASy TrEMBL
Match: A0A6J1I742 (jacalin-related lectin 5-like OS=Cucurbita maxima OX=3661 GN=LOC111471849 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1  MDNKSSS-GDKSNSGNQRQVDN-----KSSPKKMVAPGSGGNSHISRDGFEKDPQTYFSK 60
          MD+KSSS G KSN G+  Q  N      +S  KMVAPGSGG +HISRD  E +PQ YF+ 
Sbjct: 1  MDSKSSSGGSKSNDGSAGQAHNSTRSGSNSSGKMVAPGSGGTAHISRDASESNPQGYFAN 60

Query: 61 LHADEKNNK 64
          LHA +KN K
Sbjct: 61 LHAAQKNQK 69

[Close]

BLAST of Tan0005683 vs. ExPASy TrEMBL
Match: A0A7N2KKF9 (C2H2-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.4e-05
Identity = 34/60 (56.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 4   KSSSGDKSNSGNQRQVDNKSSPKKMVAPGSGGNSHISRDGFEKDPQTYFSKLHADEKNNK 63
           KS+ G  S  G        SS   MVAPGSGG SHISRD FE +PQ YFS LH+ EK NK
Sbjct: 90  KSAGGSSSKGG--------SSGGMMVAPGSGGGSHISRDTFESNPQGYFSGLHSSEKGNK 141

[Close]

BLAST of Tan0005683 vs. ExPASy TrEMBL
Match: A0A7N2KKG1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 27 KMVAPGSGGNSHISRDGFEKDPQTYFSKLHADEKNNK 64
          KMVAPGSGG SHISRD F+ +PQ YF+ LHA +K  K
Sbjct: 44 KMVAPGSGGGSHISRDSFQSNPQIYFAGLHAGQKGKK 80

[Close]

BLAST of Tan0005683 vs. ExPASy TrEMBL
Match: A0A5N6R1F8 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008572 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-04
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 28 MVAPGSGGNSHISRDGFEKDPQTYFSKLHADEKNNK 64
          MVAPGSGG +HISRD FE +PQ YFS LH+ EK  K
Sbjct: 48 MVAPGSGGGAHISRDTFESNPQGYFSGLHSTEKGTK 83

[Close]

BLAST of Tan0005683 vs. TAIR 10
Match: AT5G61412.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33145.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 7.3e-05
Identity = 27/62 (43.55%), Postives = 34/62 (54.84%), Query Frame = 0


Query: 7  SGDKSNSGNQRQVDNKS-----SPKKMVAPGSGGNSHISRDGFEKDPQTYFSKLHADEKN 64
          +G KS  G Q     KS         MVAPG+ G ++ISR GFE +PQ YFS LH   ++
Sbjct: 16 AGGKSGGGGQSSGGGKSGGGGAGAGNMVAPGTNGGAYISRGGFESNPQGYFSNLHGSGQS 75

[Close]

BLAST of Tan0005683 vs. TAIR 10
Match: AT4G33145.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 2.8e-04
Identity = 27/59 (45.76%), Postives = 32/59 (54.24%), Query Frame = 0


Query: 5  SSSGDKSNSGNQRQVDNKSSPKKMVAPGSGGNSHISRDGFEKDPQTYFSKLHADEKNNK 64
          SSSG    +GN            MVAPGSGG++ I R  FE + + YF  LHA EK NK
Sbjct: 18 SSSGTAPGAGN------------MVAPGSGGSAQIPRAAFEANSKAYFDNLHAKEKANK 64

[Close]

BLAST of Tan0005683 vs. TAIR 10
Match: AT2G30560.1 (glycine-rich protein )

HSP 1 Score: 40.8 bits (94), Expect = 4.7e-04
Identity = 19/29 (65.52%), Postives = 21/29 (72.41%), Query Frame = 0


Query: 28  MVAPGSGGNSHISRDGFEKDPQTYFSKLH 57
           MVAPGS G+S ISRD FE D + YF  LH
Sbjct: 140 MVAPGSNGSSTISRDKFESDTKGYFDNLH 168

The following BLAST results are available for this feature:

BLAST of Tan0005683 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0005683 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951913.1	4.3e-07	57.97	jacalin-related lectin 5-like [Cucurbita moschata] >XP_023521144.1 jacalin-relat...	[more]
XP_022973282.1	3.6e-06	56.52	jacalin-related lectin 5-like [Cucurbita maxima]	[more]
KAE8022802.1	7.5e-04	69.44	hypothetical protein FH972_008572 [Carpinus fangiana]	[more]
XP_018842977.1	9.8e-04	69.44	glycine-rich cell wall structural protein 1.0 [Juglans regia] >KAF5450984.1 hypo...	[more]
CAA7032866.1	9.8e-04	60.98	unnamed protein product [Microthlaspi erraticum]	[more]

BLAST of Tan0005683 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJ19	2.1e-07	57.97	jacalin-related lectin 5-like OS=Cucurbita moschata OX=3662 GN=LOC111454653 PE=4...	[more]
A0A6J1I742	1.8e-06	56.52	jacalin-related lectin 5-like OS=Cucurbita maxima OX=3661 GN=LOC111471849 PE=4 S...	[more]
A0A7N2KKF9	7.4e-05	56.67	C2H2-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2KKG1	1.3e-04	67.57	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5N6R1F8	3.6e-04	69.44	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008572 PE=4 SV=1	[more]

BLAST of Tan0005683 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61412.1	7.3e-05	43.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G33145.1	2.8e-04	45.76	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G30560.1	4.7e-04	65.52	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005683.1	Tan0005683.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0005488	binding
molecular_function	GO:0003700	DNA-binding transcription factor activity