Tan0005405 (gene) Snake gourd v1

Overview


Name	Tan0005405
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	30S ribosomal protein 2, chloroplastic-like
Location	LG06: 4159595 .. 4162479 (-)
RNA-Seq Expression	Tan0005405
Synteny	Tan0005405

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAAACCTCAGGCCTCGCTCGCTTCAGGGTTCTGTAGCTTCTTCTTCTCTTTCTCCCACTCGCAACTCAAAGCTCTACAGACCAAAAATGGCTTCCATCTCATCATCCGTAATATCGGCAACGAATCTCATCCATAGCTCCACAAAGCCCAACGAAATCCCACAAAAATTATCCAAACAATTTCTCAAACCAATCTCATTTCACCGCCTCCGCCTATCTCCCTGTCGCCCCACGAGACTCTTCACGCCGGTTACTGCCCAGGGTCCCAGTTCGGTCGCGGCAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGGATAATGAGGACCTCACTCGGATTGTCGAACAACATGGGGCTGTAGAGAAGGCTGAGGTGCGTAATTTATGATTACAATTTTCATGGTTTTCTTCTTTTGGAGATTTTGGATTTTGTCTATCTGCTTAGTTTGTCTTGAACCTTCGCATAATTGGATTGAGTTTGCTTGTCTATAAGTTCATCAAATTCAAAACTGCTGCCTGAATGTAGCCTGATTTTGGCCTAAATTTGTCGACCATTTACTTCCATATGGAGTTTGCAGAATGTAGGAAGGAATTAAGATGAAAAAATTTTGAACCCTGCTTTCTACTTTTAGTTTTAGACAAGGTTTCGCGGTTGGATTTGGTTCTTGTCATCCATGAATCAAACCGAATCAATTTTCACCTCTATCACACTAGAACACGATGAAATGTTCTTCAATAATAGCTAAGCTATCACTAGGTAATCCCTGTTCATTGCTTATACATGGTTTCCATACCCTTCATTTCAACTAGAATATATTAAGGGCCAAGGCCATCCTCATAAGAGCATGCCATGGAACCAATCACATAAGTTGTATCCATTGTTGTTGGGATTCAAGATCTTATTTACAGGCCACGGATAGAACTTTTATGTCTTTTTAGGAGAGGGAAGAGTTCATAGGAGGGGAAAGGATAGTCTGTTAGTTACAATAAGCAGTCTCTTATCAAAGGGAAGAAGAATTTAGAGAATGTCAGGATGATTTTAGAAGAAAGGAGAATTTAAATGTGTGAAATATGCTCGCCACGGGCTCATAGAAATTCCATAGGTTATAATTTAATTCTTGCTGCTTTCAGGGGTTAATCACTTAGGGTCGTTGTGTTTGTATGAGAGTATCTAAGATGAGTACCTAGCTAGCTTTTCAGTCTGCTCGTTGCAGCTGCAGCTGATCTTTAACTAAAGACTTCTTGGTGACAAATTCAAAGGGAAACTACTTTCAGCATCAGAAAGTTAAATGCCATTGGCACTGTATCATTTGGTTCTCTTTGGTCATGTATCTAACTCATGGAGATATTATTGATCTTAAGTGCAGTTCTTCCTTGTTAGAAAAGTTACAAGCTAATCTATACTTATAGAAAAAAGGATATCAATACAATACAATGTAGCCATTTTTAAAAACTAGCTAGTTTTTCCTTCAAAGTCAGAATTTTTCCTGGCAAGGTAATTGAACAAAACAGTCTCTAAAATCAAGTAGCTGTGACATTTTTTTTAATGAATTCTTTCTTGCAATCAATTGACTTGAAGAATTCTAGCATCCCATTGTTCTTAATCTTTACTTGCTAACTGTTGGTATTGGCTTTAAGACTCCAATCTTGTTCCATTTCCAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGGTTTGCCTTTGTTACCATGAAAACAGTTGATGACGCAAATGCAGCAATTGAGAAACTGAATGAGACGGTAAGTTAATAGTAATACCTACAAAGTGCAATGAAAATTGAAAAAATAAAAAATAAAAATTGTTTCTTACCATTCACTAGAATCTAGGCAGATCAATTGTGCTGACAATATCGGTCTAATGGCAGGAAGTTGGAGGGCGTACGATTAAAGTTAATATAACGGAAAAACCTTTGGTAAATACGGTTGATATGTCACTTCTTCAGGCAGAGGAATCCCAATTCATCGACAGTCCCTACAAAGTGTATGTGGGAAATATTTCGAGTACAATTTCTACCGAAACGCTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCAAGGGTTCCCGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTTTCTTCAGAGGAGGAAGTTGAAGCTGCCATTTCATCTTTTAACAATGCTGTAAGTAACATGCCTCCATTCTCTATCATATCGAATATTGTGATACCGATAGCATTACCAATTTATGCAGACTCTATCTCACTTTCTGGTCCATATCTCATAATGTCCCTTGGTTTGGTTTCATGCATTGGCAAGATTTTTGCTCCTGTTTGTTAGACATTGTCAGATAGAGCATTCCTTGGTTCATTTTCAGTTTCCCTAAACAAGTGCATAGTAACATTTCTGATCACTAACTTGTAAGAAACATTTCTAAAACTAGTTGGTGGTATGTCAAAGATATCACTAACAGTTGGATGAGCTATGTTCTCAAATTAAGATGATGGCATACTACCCCGAAAACTCTCTTACACATTTTTCGTTTCCGGATGATTGGAAGAAGCTGGTGTCTGATATGTTTTTCTTTGCTGCAGTTGTTGGAAGGTCAACCAATTCGTGTAAACAAGGCATAGTTTTGTAGGATTCTTTGTAACAAAATGTCTGGAAATTTCACTTTTGCCTCTTGGCATGAAGCAGAGGGCAACCTTTTTCACTCAATTTCTCTGTATTGATCATTAATGTATAATCTTGTTTATTTTTCTGTTTGAGCATCCTGTTTTAACTTCAAAGAGACTTAAACATGCAAATCTTTGATTGCATTTCAAACATGTAGTGCATTATTTTCACATGAATTAATTATTCGTTTACAACATA

mRNA sequence

GATAAACCTCAGGCCTCGCTCGCTTCAGGGTTCTGTAGCTTCTTCTTCTCTTTCTCCCACTCGCAACTCAAAGCTCTACAGACCAAAAATGGCTTCCATCTCATCATCCGTAATATCGGCAACGAATCTCATCCATAGCTCCACAAAGCCCAACGAAATCCCACAAAAATTATCCAAACAATTTCTCAAACCAATCTCATTTCACCGCCTCCGCCTATCTCCCTGTCGCCCCACGAGACTCTTCACGCCGGTTACTGCCCAGGGTCCCAGTTCGGTCGCGGCAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGGATAATGAGGACCTCACTCGGATTGTCGAACAACATGGGGCTGTAGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGGTTTGCCTTTGTTACCATGAAAACAGTTGATGACGCAAATGCAGCAATTGAGAAACTGAATGAGACGGAAGTTGGAGGGCGTACGATTAAAGTTAATATAACGGAAAAACCTTTGGTAAATACGGTTGATATGTCACTTCTTCAGGCAGAGGAATCCCAATTCATCGACAGTCCCTACAAAGTGTATGTGGGAAATATTTCGAGTACAATTTCTACCGAAACGCTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCAAGGGTTCCCGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTTTCTTCAGAGGAGGAAGTTGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGTCAACCAATTCGTGTAAACAAGGCATAGTTTTGTAGGATTCTTTGTAACAAAATGTCTGGAAATTTCACTTTTGCCTCTTGGCATGAAGCAGAGGGCAACCTTTTTCACTCAATTTCTCTGTATTGATCATTAATGTATAATCTTGTTTATTTTTCTGTTTGAGCATCCTGTTTTAACTTCAAAGAGACTTAAACATGCAAATCTTTGATTGCATTTCAAACATGTAGTGCATTATTTTCACATGAATTAATTATTCGTTTACAACATA

Coding sequence (CDS)

ATGGCTTCCATCTCATCATCCGTAATATCGGCAACGAATCTCATCCATAGCTCCACAAAGCCCAACGAAATCCCACAAAAATTATCCAAACAATTTCTCAAACCAATCTCATTTCACCGCCTCCGCCTATCTCCCTGTCGCCCCACGAGACTCTTCACGCCGGTTACTGCCCAGGGTCCCAGTTCGGTCGCGGCAAGGAAATTGTACATTGGGAATATACCTAGAAATGTGGATAATGAGGACCTCACTCGGATTGTCGAACAACATGGGGCTGTAGAGAAGGCTGAGGTCATGTATGACAAATACTCTGGAAGAAGCCGCAGGTTTGCCTTTGTTACCATGAAAACAGTTGATGACGCAAATGCAGCAATTGAGAAACTGAATGAGACGGAAGTTGGAGGGCGTACGATTAAAGTTAATATAACGGAAAAACCTTTGGTAAATACGGTTGATATGTCACTTCTTCAGGCAGAGGAATCCCAATTCATCGACAGTCCCTACAAAGTGTATGTGGGAAATATTTCGAGTACAATTTCTACCGAAACGCTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCAAGGGTTCCCGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTTTCTTCAGAGGAGGAAGTTGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGTCAACCAATTCGTGTAAACAAGGCATAG

Protein sequence

MASISSSVISATNLIHSSTKPNEIPQKLSKQFLKPISFHRLRLSPCRPTRLFTPVTAQGPSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEESQFIDSPYKVYVGNISSTISTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA

Homology

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BLAST of Tan0005405 vs. ExPASy Swiss-Prot
Match: Q8VYM4 (30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 PE=2 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.2e-71
Identity = 138/204 (67.65%), Postives = 166/204 (81.37%), Query Frame = 0


Query: 40  RLRLSPCRPTRLFTPVTAQGPSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMY 99
           R R  P   T       A  PSS AAR++YIGNIPR V NE LT++VE+HGAVEK +VMY
Sbjct: 50  RTRFIPYAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMY 109

Query: 100 DKYSGRSRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEE 159
           DKYSGRSRRF F TMK+V+DANA +EKLN   V GR IKVNITEKP+ ++ D+S+LQ+E+
Sbjct: 110 DKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSED 169

Query: 160 SQFIDSPYKVYVGNISSTISTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEE 219
           S F+DSPYKVYVGN++ T++ E L+N FSEKGKV+SAKVSRVPGTSKS+G+GFVTFSSEE
Sbjct: 170 SAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEE 229

Query: 220 EVEAAISSFNNALLEGQPIRVNKA 244
           +VEAAI + NN+LLEGQ IRVNKA
Sbjct: 230 DVEAAIVALNNSLLEGQKIRVNKA 253

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BLAST of Tan0005405 vs. ExPASy Swiss-Prot
Match: P82277 (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 9.2e-69
Identity = 140/242 (57.85%), Postives = 179/242 (73.97%), Query Frame = 0


Query: 2   ASISSSVISATNLIHSSTKPNEIPQKLSKQFLKPISFHRLRLSPCRPTRLFTPVTAQGPS 61
           +S S    S+ NL+   +  N    KL  +        ++R      T   +  ++    
Sbjct: 21  SSSSKPKFSSQNLVQLQSFSNGFGLKLKTRVSTNPPLLKVRAVVTEETSSSSTASSSSDG 80

Query: 62  SVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDAN 121
              AR+LY+GNIPRN++N++L  IVE+HGA+E AEVMYDKYSGRSRRF FVTMKTV+DAN
Sbjct: 81  E-GARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDAN 140

Query: 122 AAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEESQFIDSPYKVYVGNISSTISTE 181
           A IEKLN+TE+GGR IKVNITEKPL   +D++  QAE+SQF++SPYKVY+GN++ T++ E
Sbjct: 141 AVIEKLNDTEIGGRKIKVNITEKPL-EGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNE 200

Query: 182 TLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVN 241
            LK+FFSEKGKVL AKV R PGTSKS+G+GFV+FSSEEEVEAAI + NN++LEGQ IRVN
Sbjct: 201 LLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVN 260

Query: 242 KA 244
           KA
Sbjct: 261 KA 260

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BLAST of Tan0005405 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-31
Identity = 66/179 (36.87%), Postives = 116/179 (64.80%), Query Frame = 0


Query: 67  KLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEK 126
           +LY+GN+P  + + +L++I  + G V   +++YDK + RSR F FVTM ++++A  A++ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 127 LNETEVGGRTIKVNITEKPL--VNTVDMSLLQAEESQFIDSPYKVYVGNISSTISTETLK 186
            N +++GGRT+KVN  E P    N V  + ++     ++DSP+KVY GN+   ++++ LK
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236

Query: 187 NFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 244
           + F ++  VL AKV     T +S G+GF++F S E V++A+++ N   +EG+ +R+N A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295

[Close]

BLAST of Tan0005405 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-31
Identity = 71/184 (38.59%), Postives = 119/184 (64.67%), Query Frame = 0


Query: 62  SVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDAN 121
           SV   +LY+GN+P ++ +  L+ I  + G V   E++YD+ + RSR FAFVTM +V++A 
Sbjct: 110 SVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAK 169

Query: 122 AAIEKLNETEVGGRTIKVNITEKPL--VNTVDMSLLQAEESQFIDSPYKVYVGNISSTIS 181
            AI   + ++VGGRT+KVN  E P      V  + +++    F+DSP+K+YV N+S  ++
Sbjct: 170 EAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALT 229

Query: 182 TETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIR 241
           ++ L++ F+++   +SAKV     + +S G+GF+TFSS E + +A+ + N   LEG+P+R
Sbjct: 230 SQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLR 289

Query: 242 VNKA 244
           +N A
Sbjct: 290 LNVA 293

[Close]

BLAST of Tan0005405 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-28
Identity = 75/181 (41.44%), Postives = 108/181 (59.67%), Query Frame = 0


Query: 67  KLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEK 126
           KL++GN+P +VD+E L R+ EQ G VE AEV+Y++ + +SR F FVTM TV++A  A+E 
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196

Query: 127 LNETEVGGRTIKVNIT----EKPLVNTVDMSLLQAEESQFIDSPYKVYVGNISSTISTET 186
            N  +V GR + VN      E+P               +  +  Y++YVGNI   I    
Sbjct: 197 YNRYDVNGRLLTVNKAARRGERP-----------ERPPRTFEQSYRIYVGNIPWGIDDAR 256

Query: 187 LKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNK 244
           L+  FSE GKV+SA+V     T +S G+GFVT +SE E+  AI++ +   L+G+ IRVN 
Sbjct: 257 LEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNV 306

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BLAST of Tan0005405 vs. NCBI nr
Match: XP_038896967.1 (30S ribosomal protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 396.4 bits (1017), Expect = 1.8e-106
Identity = 215/247 (87.04%), Postives = 225/247 (91.09%), Query Frame = 0


Query: 1   MASISSSVISATNLIHSSTKPNEIPQKLSKQFLKPISFHR---LRLSPCRPTRLFTPV-T 60
           MAS  SS++S TNLIHSSTKP EIPQ  S QFL+PISFH    L  +  RPTRLF     
Sbjct: 1   MASF-SSILSPTNLIHSSTKPTEIPQNFSTQFLRPISFHPPHILLAAAKRPTRLFAVAEA 60

Query: 61  AQGPSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKT 120
           AQG SSVA RKLYIGNIPRNVDNE+LTRIV++HGAVEKAEVMYDKYSGRSRRFAFVTMKT
Sbjct: 61  AQGASSVAERKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKT 120

Query: 121 VDDANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEESQFIDSPYKVYVGNISS 180
           VDDANAAIEKLNETEVGGRTIKVNITEKPLVNT+DMSLLQAE+SQFIDSPYKVYVGNISS
Sbjct: 121 VDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSPYKVYVGNISS 180

Query: 181 TISTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQ 240
           T+STETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQ
Sbjct: 181 TVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQ 240

Query: 241 PIRVNKA 244
           PIRVNKA
Sbjct: 241 PIRVNKA 246

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BLAST of Tan0005405 vs. NCBI nr
Match: XP_022991923.1 (30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 389.0 bits (998), Expect = 2.9e-104
Identity = 216/258 (83.72%), Postives = 227/258 (87.98%), Query Frame = 0


Query: 1   MASISSSVISATNLIHSSTKPNEIPQKLSKQFLKPISFH----RLRLSP-------CRPT 60
           MASI SS+++  NLIHSS KP EIPQ LS QFL+PISFH     LR+SP        R T
Sbjct: 1   MASI-SSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRT 60

Query: 61  RLF----TPVTAQGPSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGR 120
           RLF      V+ Q PSSVAARKLYIGNIPRNV NE+LTRIVE+HGAVEKAEVMYDKYSGR
Sbjct: 61  RLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGR 120

Query: 121 SRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEESQFIDS 180
           SRRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNTVDMSLLQA+ESQFIDS
Sbjct: 121 SRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDS 180

Query: 181 PYKVYVGNISSTISTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240
           PYKVYVGNISST+STETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNALLEGQPIRVNKA 244
           SSFNNALLEGQPIRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Tan0005405 vs. NCBI nr
Match: KAG6575671.1 (30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014222.1 30S ribosomal protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 389.0 bits (998), Expect = 2.9e-104
Identity = 216/258 (83.72%), Postives = 227/258 (87.98%), Query Frame = 0


Query: 1   MASISSSVISATNLIHSSTKPNEIPQKLSKQFLKPISFH----RLRLSP-------CRPT 60
           MASI SS+++  NLIHSS KP EIPQ LS QFL+PISFH     LR+SP        R T
Sbjct: 1   MASI-SSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRT 60

Query: 61  RLF----TPVTAQGPSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGR 120
           RLF      V+ Q PSSVAARKLYIGNIPRNV NE+LTRIVE+HGAVEKAEVMYDKYSGR
Sbjct: 61  RLFAVAEVAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGR 120

Query: 121 SRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEESQFIDS 180
           SRRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNTVDMSLLQA+ESQFIDS
Sbjct: 121 SRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDS 180

Query: 181 PYKVYVGNISSTISTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240
           PYKVYVGNISST+STETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNALLEGQPIRVNKA 244
           SSFNNALLEGQPIRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Tan0005405 vs. NCBI nr
Match: XP_022954329.1 (30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 388.7 bits (997), Expect = 3.8e-104
Identity = 216/258 (83.72%), Postives = 227/258 (87.98%), Query Frame = 0


Query: 1   MASISSSVISATNLIHSSTKPNEIPQKLSKQFLKPISFH----RLRLSP-------CRPT 60
           MASI SS+++  NLIHSS KP EIPQ LS QFL+PISFH     LR+SP        R T
Sbjct: 1   MASI-SSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRT 60

Query: 61  RLF----TPVTAQGPSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGR 120
           RLF      V+ Q PSSVAARKLYIGNIPRNV NE+LTRIVE+HGAVEKAEVMYDKYSGR
Sbjct: 61  RLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGR 120

Query: 121 SRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEESQFIDS 180
           SRRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNTVDMSLLQA+ESQFIDS
Sbjct: 121 SRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDS 180

Query: 181 PYKVYVGNISSTISTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240
           PYKVYVGNISST+STETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNALLEGQPIRVNKA 244
           SSFNNALLEGQPIRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Tan0005405 vs. NCBI nr
Match: XP_022954328.1 (30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 388.7 bits (997), Expect = 3.8e-104
Identity = 216/258 (83.72%), Postives = 227/258 (87.98%), Query Frame = 0


Query: 1   MASISSSVISATNLIHSSTKPNEIPQKLSKQFLKPISFH----RLRLSP-------CRPT 60
           MASI SS+++  NLIHSS KP EIPQ LS QFL+PISFH     LR+SP        R T
Sbjct: 23  MASI-SSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRT 82

Query: 61  RLF----TPVTAQGPSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGR 120
           RLF      V+ Q PSSVAARKLYIGNIPRNV NE+LTRIVE+HGAVEKAEVMYDKYSGR
Sbjct: 83  RLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGR 142

Query: 121 SRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEESQFIDS 180
           SRRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNTVDMSLLQA+ESQFIDS
Sbjct: 143 SRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDS 202

Query: 181 PYKVYVGNISSTISTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240
           PYKVYVGNISST+STETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI
Sbjct: 203 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 262

Query: 241 SSFNNALLEGQPIRVNKA 244
           SSFNNALLEGQPIRVNKA
Sbjct: 263 SSFNNALLEGQPIRVNKA 279

[Close]

BLAST of Tan0005405 vs. ExPASy TrEMBL
Match: A0A6J1JXN0 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488418 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.4e-104
Identity = 216/258 (83.72%), Postives = 227/258 (87.98%), Query Frame = 0


Query: 1   MASISSSVISATNLIHSSTKPNEIPQKLSKQFLKPISFH----RLRLSP-------CRPT 60
           MASI SS+++  NLIHSS KP EIPQ LS QFL+PISFH     LR+SP        R T
Sbjct: 1   MASI-SSILTPANLIHSSIKPTEIPQNLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRT 60

Query: 61  RLF----TPVTAQGPSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGR 120
           RLF      V+ Q PSSVAARKLYIGNIPRNV NE+LTRIVE+HGAVEKAEVMYDKYSGR
Sbjct: 61  RLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGR 120

Query: 121 SRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEESQFIDS 180
           SRRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNTVDMSLLQA+ESQFIDS
Sbjct: 121 SRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDS 180

Query: 181 PYKVYVGNISSTISTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240
           PYKVYVGNISST+STETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNALLEGQPIRVNKA 244
           SSFNNALLEGQPIRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Tan0005405 vs. ExPASy TrEMBL
Match: A0A6J1GSN8 (30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.8e-104
Identity = 216/258 (83.72%), Postives = 227/258 (87.98%), Query Frame = 0


Query: 1   MASISSSVISATNLIHSSTKPNEIPQKLSKQFLKPISFH----RLRLSP-------CRPT 60
           MASI SS+++  NLIHSS KP EIPQ LS QFL+PISFH     LR+SP        R T
Sbjct: 1   MASI-SSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRT 60

Query: 61  RLF----TPVTAQGPSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGR 120
           RLF      V+ Q PSSVAARKLYIGNIPRNV NE+LTRIVE+HGAVEKAEVMYDKYSGR
Sbjct: 61  RLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGR 120

Query: 121 SRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEESQFIDS 180
           SRRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNTVDMSLLQA+ESQFIDS
Sbjct: 121 SRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDS 180

Query: 181 PYKVYVGNISSTISTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240
           PYKVYVGNISST+STETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI
Sbjct: 181 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240

Query: 241 SSFNNALLEGQPIRVNKA 244
           SSFNNALLEGQPIRVNKA
Sbjct: 241 SSFNNALLEGQPIRVNKA 257

[Close]

BLAST of Tan0005405 vs. ExPASy TrEMBL
Match: A0A6J1GQT6 (30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.8e-104
Identity = 216/258 (83.72%), Postives = 227/258 (87.98%), Query Frame = 0


Query: 1   MASISSSVISATNLIHSSTKPNEIPQKLSKQFLKPISFH----RLRLSP-------CRPT 60
           MASI SS+++  NLIHSS KP EIPQ LS QFL+PISFH     LR+SP        R T
Sbjct: 23  MASI-SSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRT 82

Query: 61  RLF----TPVTAQGPSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGR 120
           RLF      V+ Q PSSVAARKLYIGNIPRNV NE+LTRIVE+HGAVEKAEVMYDKYSGR
Sbjct: 83  RLFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGR 142

Query: 121 SRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEESQFIDS 180
           SRRFAFVTMKTVDDANA IEKLN+TEVGGRTIKVNITEKPLVNTVDMSLLQA+ESQFIDS
Sbjct: 143 SRRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDS 202

Query: 181 PYKVYVGNISSTISTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 240
           PYKVYVGNISST+STETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI
Sbjct: 203 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 262

Query: 241 SSFNNALLEGQPIRVNKA 244
           SSFNNALLEGQPIRVNKA
Sbjct: 263 SSFNNALLEGQPIRVNKA 279

[Close]

BLAST of Tan0005405 vs. ExPASy TrEMBL
Match: A0A6J1H8X7 (30S ribosomal protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460708 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 5.4e-104
Identity = 212/249 (85.14%), Postives = 224/249 (89.96%), Query Frame = 0


Query: 1   MASISSSVISATNLIHSSTKPNEIPQKLSKQFLKPISFHR------LRLSPCRPTRLFTP 60
           MASI S+V+S TNLIHSSTKP EI        LK +SFHR      LRLSP RPTRLF  
Sbjct: 1   MASI-SAVLSPTNLIHSSTKPAEI-------LLKSVSFHRRRTHTLLRLSPGRPTRLFAA 60

Query: 61  VTAQGPSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTM 120
           +TAQ  SSVA RKLY+GNIPRNVDNE+L RIVEQHGAVEKAEVMYDKYSGRSRRFAFVTM
Sbjct: 61  LTAQDSSSVAERKLYVGNIPRNVDNEELKRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTM 120

Query: 121 KTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEESQFIDSPYKVYVGNI 180
           KTVDDANAAIEKLNET+VGGRTIKVNITEKP+VNTVDMSLL+AEESQFIDSP+KVYVGNI
Sbjct: 121 KTVDDANAAIEKLNETDVGGRTIKVNITEKPVVNTVDMSLLEAEESQFIDSPHKVYVGNI 180

Query: 181 SSTISTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLE 240
           SST+STETLKNFFSEKGKVLSAKVSRVPGTSK+SGYGFVTFSSEEEVEAAISSFNNALLE
Sbjct: 181 SSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKASGYGFVTFSSEEEVEAAISSFNNALLE 240

Query: 241 GQPIRVNKA 244
           GQPIRVNKA
Sbjct: 241 GQPIRVNKA 241

[Close]

BLAST of Tan0005405 vs. ExPASy TrEMBL
Match: A0A5A7UYL6 (30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001110 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.5e-103
Identity = 211/252 (83.73%), Postives = 226/252 (89.68%), Query Frame = 0


Query: 1   MASISSSVISATNLIHSSTKPNEIPQKLSKQFLKPISFH----RLRLSPCR---PTRLFT 60
           MASI SS+++ TNLIH+S KP EI Q LS QFL+PISFH     LR+SP     PTRLF 
Sbjct: 1   MASI-SSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFA 60

Query: 61  PVTA--QGPSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGRSRRFAF 120
              A  QG SSVA RKLYIGNIPRNV+NE+LTRIV++HGAVEKAEVMYDKYSGRSRRFAF
Sbjct: 61  VAEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAF 120

Query: 121 VTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEESQFIDSPYKVYV 180
           VTMKTV+DANAAIEKLNETEVGGR IKVNITEKP+VNTVD+S+LQAEESQFIDSPYKVYV
Sbjct: 121 VTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYV 180

Query: 181 GNISSTISTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNA 240
           GNISST+STETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNA
Sbjct: 181 GNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNA 240

Query: 241 LLEGQPIRVNKA 244
           LLEGQPIRVNKA
Sbjct: 241 LLEGQPIRVNKA 251

[Close]

BLAST of Tan0005405 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 271.2 bits (692), Expect = 8.3e-73
Identity = 138/204 (67.65%), Postives = 166/204 (81.37%), Query Frame = 0


Query: 40  RLRLSPCRPTRLFTPVTAQGPSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMY 99
           R R  P   T       A  PSS AAR++YIGNIPR V NE LT++VE+HGAVEK +VMY
Sbjct: 50  RTRFIPYAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMY 109

Query: 100 DKYSGRSRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEE 159
           DKYSGRSRRF F TMK+V+DANA +EKLN   V GR IKVNITEKP+ ++ D+S+LQ+E+
Sbjct: 110 DKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSED 169

Query: 160 SQFIDSPYKVYVGNISSTISTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEE 219
           S F+DSPYKVYVGN++ T++ E L+N FSEKGKV+SAKVSRVPGTSKS+G+GFVTFSSEE
Sbjct: 170 SAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEE 229

Query: 220 EVEAAISSFNNALLEGQPIRVNKA 244
           +VEAAI + NN+LLEGQ IRVNKA
Sbjct: 230 DVEAAIVALNNSLLEGQKIRVNKA 253

[Close]

BLAST of Tan0005405 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 271.2 bits (692), Expect = 8.3e-73
Identity = 138/204 (67.65%), Postives = 166/204 (81.37%), Query Frame = 0


Query: 40  RLRLSPCRPTRLFTPVTAQGPSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMY 99
           R R  P   T       A  PSS AAR++YIGNIPR V NE LT++VE+HGAVEK +VMY
Sbjct: 50  RTRFIPYAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMY 109

Query: 100 DKYSGRSRRFAFVTMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEE 159
           DKYSGRSRRF F TMK+V+DANA +EKLN   V GR IKVNITEKP+ ++ D+S+LQ+E+
Sbjct: 110 DKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSED 169

Query: 160 SQFIDSPYKVYVGNISSTISTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEE 219
           S F+DSPYKVYVGN++ T++ E L+N FSEKGKV+SAKVSRVPGTSKS+G+GFVTFSSEE
Sbjct: 170 SAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEE 229

Query: 220 EVEAAISSFNNALLEGQPIRVNKA 244
           +VEAAI + NN+LLEGQ IRVNKA
Sbjct: 230 DVEAAIVALNNSLLEGQKIRVNKA 253

[Close]

BLAST of Tan0005405 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 137.1 bits (344), Expect = 1.9e-32
Identity = 66/179 (36.87%), Postives = 116/179 (64.80%), Query Frame = 0


Query: 67  KLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDDANAAIEK 126
           +LY+GN+P  + + +L++I  + G V   +++YDK + RSR F FVTM ++++A  A++ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 127 LNETEVGGRTIKVNITEKPL--VNTVDMSLLQAEESQFIDSPYKVYVGNISSTISTETLK 186
            N +++GGRT+KVN  E P    N V  + ++     ++DSP+KVY GN+   ++++ LK
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236

Query: 187 NFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 244
           + F ++  VL AKV     T +S G+GF++F S E V++A+++ N   +EG+ +R+N A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295

[Close]

BLAST of Tan0005405 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 136.3 bits (342), Expect = 3.2e-32
Identity = 76/184 (41.30%), Postives = 113/184 (61.41%), Query Frame = 0


Query: 60  PSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDD 119
           P +    KLY GN+P NVD+  L +I++     E  EV+Y++ +G+SR FAFVTM  V+D
Sbjct: 79  PPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVED 138

Query: 120 ANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEESQFIDSPYKVYVGNISSTIS 179
            N  I+ L+ TE  GR +KVN  +KP  N         +E  + ++ +K++VGN+S T++
Sbjct: 139 CNIIIDNLDGTEYLGRALKVNFADKPKPN---------KEPLYPETEHKLFVGNLSWTVT 198

Query: 180 TETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIR 239
           +E+L   F E G V+ A+V     T +S GYGFV +SS+ E+E A+ S +   LEG+ IR
Sbjct: 199 SESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIR 253

Query: 240 VNKA 244
           VN A
Sbjct: 259 VNLA 253

[Close]

BLAST of Tan0005405 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 126.7 bits (317), Expect = 2.5e-29
Identity = 70/184 (38.04%), Postives = 107/184 (58.15%), Query Frame = 0


Query: 60  PSSVAARKLYIGNIPRNVDNEDLTRIVEQHGAVEKAEVMYDKYSGRSRRFAFVTMKTVDD 119
           P      KL++GN+P +VD++ L  + EQ G VE +EV+Y++ + +SR F FVTM TV++
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166

Query: 120 ANAAIEKLNETEVGGRTIKVNITEKPLVNTVDMSLLQAEESQFIDSPYKVYVGNISSTIS 179
           A  A+EK N  EV GR + VN                  + +  D+ +++YVGN+   + 
Sbjct: 167 AEKAVEKFNSFEVNGRRLTVN-------RAAPRGSRPERQPRVYDAAFRIYVGNLPWDVD 226

Query: 180 TETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIR 239
           +  L+  FSE GKV+ A+V     T +S G+GFV  S+E EV  AI++ +   LEG+ I+
Sbjct: 227 SGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIK 283

Query: 240 VNKA 244
           VN A
Sbjct: 287 VNVA 283

The following BLAST results are available for this feature:

BLAST of Tan0005405 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYM4	1.2e-71	67.65	30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 ...	[more]
P82277	9.2e-69	57.85	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=...	[more]
Q39061	2.6e-31	36.87	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19684	3.4e-31	38.59	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19683	2.1e-28	41.44	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]

BLAST of Tan0005405 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896967.1	1.8e-106	87.04	30S ribosomal protein 2, chloroplastic [Benincasa hispida]	[more]
XP_022991923.1	2.9e-104	83.72	30S ribosomal protein 2, chloroplastic-like [Cucurbita maxima]	[more]
KAG6575671.1	2.9e-104	83.72	30S ribosomal protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022954329.1	3.8e-104	83.72	30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
XP_022954328.1	3.8e-104	83.72	30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Tan0005405 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JXN0	1.4e-104	83.72	30S ribosomal protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GSN8	1.8e-104	83.72	30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1GQT6	1.8e-104	83.72	30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1H8X7	5.4e-104	85.14	30S ribosomal protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5A7UYL6	3.5e-103	83.73	30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Tan0005405 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52150.1	8.3e-73	67.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	8.3e-73	67.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	1.9e-32	36.87	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	3.2e-32	41.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	2.5e-29	38.04	chloroplast RNA-binding protein 31B	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 67..140 e-value: 5.8E-27 score: 105.6 coord: 168..241 e-value: 4.6E-23 score: 92.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 169..239 e-value: 2.3E-17 score: 62.6 coord: 68..138 e-value: 7.2E-20 score: 70.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 66..144 score: 18.478559
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 167..243 score: 18.239782
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 168..241 e-value: 0.44 score: 17.9 coord: 67..140 e-value: 1.0 score: 14.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 153..243 e-value: 5.2E-24 score: 86.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..147 e-value: 2.8E-27 score: 97.3
None	No IPR available	PANTHER	PTHR48025:SF4	30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC	coord: 2..243
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 2..243
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 67..144 e-value: 5.66192E-35 score: 118.1
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 161..243
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 49..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005405.1	Tan0005405.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding