Tan0005377 (gene) Snake gourd v1

Overview


Name	Tan0005377
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	translocator protein homolog
Location	LG06: 33995188 .. 33995696 (-)
RNA-Seq Expression	Tan0005377
Synteny	Tan0005377

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCTTCTTCCTCTCCATCCTTCAAATCTAGACCAGAATCCAAATACACCAAGGCCAAGAGAGCGCTCGATCCTCGCCGCCTCCGTCGCCATTCCTCTCACCCTCACAATCGCTGCGTCTTCCTCTTCGGCCGCTCCTCCCACCATTTCCCCAATCGGAACCGTCCGATTTGGATGGCGCCACTCTGATTCCTCCACCTCTCCTCCATCGGTTCCTCCTTCCTAATCGACCTCGCCGCTTGGTTCGTTTGGGCTTCCACAGCGGCTCCAACGCCCTTCCCCTCTACATCGCGCATCTTTCCCTCAACATCGTTTGGAATCCTCTGGTGCTCGTGATTCACGCCTTTCTCCTTGCGTTTCAGTTCTGCGTTTTGGATTATGTCACTCTGTTCGCTTGTTATCGGACCTTCAAGTGAGTTAATCCCTTCACCAAGGATCTGATTAAGCCATGTTTGGCTTGGACTGCGTATCTCTCTGCTCTTACTTATGTGCTTATTGTTCTTTGA

mRNA sequence

ATGCCTTCTTCTTCCTCTCCATCCTTCAAATCTAGACCAGAATCCAAATACACCAAGGCCAAGAGAGCGCTCGATCCTCGCCGCCTCCGTCGCCATTCCTCTCACCCTCACAATCGCTGCGTCTTCCTCTTCGGCCGCTCCTCCCACCATTTCCCCAATCGGAACCGTCCGATTTGGATGGCCGGCTCCAACGCCCTTCCCCTCTACATCGCGCATCTTTCCCTCAACATCGTTTGGAATCCTCTGGTGCTCGTGATTCACGCCTTTCTCCTTGCGTTTCAGTTCTGCGTTTTGGATTATGATCTGATTAAGCCATGTTTGGCTTGGACTGCGTATCTCTCTGCTCTTACTTATGTGCTTATTGTTCTTTGA

Coding sequence (CDS)

ATGCCTTCTTCTTCCTCTCCATCCTTCAAATCTAGACCAGAATCCAAATACACCAAGGCCAAGAGAGCGCTCGATCCTCGCCGCCTCCGTCGCCATTCCTCTCACCCTCACAATCGCTGCGTCTTCCTCTTCGGCCGCTCCTCCCACCATTTCCCCAATCGGAACCGTCCGATTTGGATGGCCGGCTCCAACGCCCTTCCCCTCTACATCGCGCATCTTTCCCTCAACATCGTTTGGAATCCTCTGGTGCTCGTGATTCACGCCTTTCTCCTTGCGTTTCAGTTCTGCGTTTTGGATTATGATCTGATTAAGCCATGTTTGGCTTGGACTGCGTATCTCTCTGCTCTTACTTATGTGCTTATTGTTCTTTGA

Protein sequence

MPSSSSPSFKSRPESKYTKAKRALDPRRLRRHSSHPHNRCVFLFGRSSHHFPNRNRPIWMAGSNALPLYIAHLSLNIVWNPLVLVIHAFLLAFQFCVLDYDLIKPCLAWTAYLSALTYVLIVL

Homology

[Close]

BLAST of Tan0005377 vs. NCBI nr
Match: XP_022973726.1 (translocator protein homolog [Cucurbita maxima] >XP_022975172.1 translocator protein homolog [Cucurbita maxima])

HSP 1 Score: 137.9 bits (346), Expect = 5.9e-29
Identity = 93/172 (54.07%), Postives = 100/172 (58.14%), Query Frame = 0


Query: 4   SSSPSFKSRPESKYTKAKRALDPRRLRRHSSHPHN---RCVFLFGRSSHHFPNRNRPIWM 63
           SSSP FKSRPESKYTKAKRAL  R L    + P       +FLFGRSS HFPNRNRPIW+
Sbjct: 2   SSSPPFKSRPESKYTKAKRAL--RSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWV 61

Query: 64  A-------------------------------GSNALPLYIAHLSLNIVWNPLVLVIHAF 123
           A                               GSNALPLYIAHLSL++VWNPLVLVI A 
Sbjct: 62  APLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRAL 121

[Close]

BLAST of Tan0005377 vs. NCBI nr
Match: XP_023540366.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-28
Identity = 93/172 (54.07%), Postives = 99/172 (57.56%), Query Frame = 0


Query: 4   SSSPSFKSRPESKYTKAKRALDPRRLRRHSSHPHN---RCVFLFGRSSHHFPNRNRPIWM 63
           SSSP FKSRPESKYTKAKRAL  R L    + P       +FLFGRSS HFPNRNRPIW+
Sbjct: 57  SSSPPFKSRPESKYTKAKRAL--RSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWV 116

Query: 64  A-------------------------------GSNALPLYIAHLSLNIVWNPLVLVIHAF 123
           A                               GSNALPLYIAHLSL++VWNPLVLVI A 
Sbjct: 117 APLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRAL 176

[Close]

BLAST of Tan0005377 vs. NCBI nr
Match: XP_022945022.1 (translocator protein homolog [Cucurbita moschata])

HSP 1 Score: 135.2 bits (339), Expect = 3.8e-28
Identity = 93/172 (54.07%), Postives = 99/172 (57.56%), Query Frame = 0


Query: 4   SSSPSFKSRPESKYTKAKRALDPRRLRRHSSHPHN---RCVFLFGRSSHHFPNRNRPIWM 63
           SSSP FKSRPESKYTKAKRAL  R L    + P       +FLFGRSS HFPNRNRPIW+
Sbjct: 57  SSSPPFKSRPESKYTKAKRAL--RSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWV 116

Query: 64  A-------------------------------GSNALPLYIAHLSLNIVWNPLVLVIHAF 123
           A                               GSNALPLYIAHLSL++VWNPLVLVI A 
Sbjct: 117 APLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRAR 176

[Close]

BLAST of Tan0005377 vs. NCBI nr
Match: KAG6597521.1 (Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028979.1 Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.2 bits (339), Expect = 3.8e-28
Identity = 93/172 (54.07%), Postives = 99/172 (57.56%), Query Frame = 0


Query: 4   SSSPSFKSRPESKYTKAKRALDPRRLRRHSSHPHN---RCVFLFGRSSHHFPNRNRPIWM 63
           SSSP FKSRPESKYTKAKRAL  R L    + P       +FLFGRSS HFPNRNRPIW+
Sbjct: 2   SSSPPFKSRPESKYTKAKRAL--RSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWV 61

Query: 64  A-------------------------------GSNALPLYIAHLSLNIVWNPLVLVIHAF 123
           A                               GSNALPLYIAHLSL++VWNPLVLVI A 
Sbjct: 62  APLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRAR 121

[Close]

BLAST of Tan0005377 vs. NCBI nr
Match: XP_038878873.1 (translocator protein homolog [Benincasa hispida])

HSP 1 Score: 134.8 bits (338), Expect = 5.0e-28
Identity = 90/173 (52.02%), Postives = 102/173 (58.96%), Query Frame = 0


Query: 3   SSSSPSFKSRPESKYTKAKRALDPRRLRRHSSHPHN---RCVFLFGRSSHHFPNRNRPIW 62
           SSS+P FKSRPESKYTKAKRAL  R L    + P +     +FLFGRS+ HFPNRNRPIW
Sbjct: 2   SSSNPPFKSRPESKYTKAKRAL--RSLAVSVAIPLSLTIAVIFLFGRSARHFPNRNRPIW 61

Query: 63  M-------------------------------AGSNALPLYIAHLSLNIVWNPLVLVIHA 122
           +                                GSNALPLYIAHLSL++VWNPLVLVI +
Sbjct: 62  IGPLWLLHLSSIGSSFLIGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRS 121

Query: 123 FLLAFQFCVLDY------------------DLIKPCLAWTAYLSALTYVLIVL 124
            +LAF FCVLD+                  DLIKPCLAWTAYLSA+TYV I L
Sbjct: 122 VVLAFLFCVLDFVTLFACYRTFKRVNPFAKDLIKPCLAWTAYLSAVTYVFIDL 172

[Close]

BLAST of Tan0005377 vs. ExPASy TrEMBL
Match: A0A6J1ICB9 (translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111474208 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.9e-29
Identity = 93/172 (54.07%), Postives = 100/172 (58.14%), Query Frame = 0


Query: 4   SSSPSFKSRPESKYTKAKRALDPRRLRRHSSHPHN---RCVFLFGRSSHHFPNRNRPIWM 63
           SSSP FKSRPESKYTKAKRAL  R L    + P       +FLFGRSS HFPNRNRPIW+
Sbjct: 2   SSSPPFKSRPESKYTKAKRAL--RSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWV 61

Query: 64  A-------------------------------GSNALPLYIAHLSLNIVWNPLVLVIHAF 123
           A                               GSNALPLYIAHLSL++VWNPLVLVI A 
Sbjct: 62  APLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRAL 121

[Close]

BLAST of Tan0005377 vs. ExPASy TrEMBL
Match: A0A6J1FZS9 (translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111449384 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.9e-28
Identity = 93/172 (54.07%), Postives = 99/172 (57.56%), Query Frame = 0


Query: 4   SSSPSFKSRPESKYTKAKRALDPRRLRRHSSHPHN---RCVFLFGRSSHHFPNRNRPIWM 63
           SSSP FKSRPESKYTKAKRAL  R L    + P       +FLFGRSS HFPNRNRPIW+
Sbjct: 57  SSSPPFKSRPESKYTKAKRAL--RSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWV 116

Query: 64  A-------------------------------GSNALPLYIAHLSLNIVWNPLVLVIHAF 123
           A                               GSNALPLYIAHLSL++VWNPLVLVI A 
Sbjct: 117 APLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRAR 176

[Close]

BLAST of Tan0005377 vs. ExPASy TrEMBL
Match: A0A5D3CWC4 (Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001010 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.5e-27
Identity = 87/172 (50.58%), Postives = 101/172 (58.72%), Query Frame = 0


Query: 4   SSSPSFKSRPESKYTKAKRALDPRRLRRHSSHPHN---RCVFLFGRSSHHFPNRNRPIWM 63
           SS+P FKSRPESKYTKAKRAL  R L    + P +     +FLFGRSS HFPNRNRPIW+
Sbjct: 3   SSNPPFKSRPESKYTKAKRAL--RSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWI 62

Query: 64  -------------------------------AGSNALPLYIAHLSLNIVWNPLVLVIHAF 123
                                           GSNALPLYIAHLSL++VW+PLVLVI + 
Sbjct: 63  GPLWLLQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSV 122

[Close]

BLAST of Tan0005377 vs. ExPASy TrEMBL
Match: A0A1S4DTF2 (translocator protein homolog OS=Cucumis melo OX=3656 GN=LOC107990392 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.5e-27
Identity = 87/172 (50.58%), Postives = 101/172 (58.72%), Query Frame = 0


Query: 4   SSSPSFKSRPESKYTKAKRALDPRRLRRHSSHPHN---RCVFLFGRSSHHFPNRNRPIWM 63
           SS+P FKSRPESKYTKAKRAL  R L    + P +     +FLFGRSS HFPNRNRPIW+
Sbjct: 3   SSNPPFKSRPESKYTKAKRAL--RSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWI 62

Query: 64  -------------------------------AGSNALPLYIAHLSLNIVWNPLVLVIHAF 123
                                           GSNALPLYIAHLSL++VW+PLVLVI + 
Sbjct: 63  GPLWLLQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSV 122

[Close]

BLAST of Tan0005377 vs. ExPASy TrEMBL
Match: A0A0A0L583 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154290 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 6.0e-27
Identity = 87/172 (50.58%), Postives = 100/172 (58.14%), Query Frame = 0


Query: 4   SSSPSFKSRPESKYTKAKRALDPRRLRRHSSHPHN---RCVFLFGRSSHHFPNRNRPIWM 63
           SS+P FKSRPESKYTKAKRAL  R L    + P +     +FLFGRSS H+PNRNRPIW+
Sbjct: 3   SSNPPFKSRPESKYTKAKRAL--RSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 62

Query: 64  -------------------------------AGSNALPLYIAHLSLNIVWNPLVLVIHAF 123
                                           GSNALPLYIAHLSL++VWNPLVLVI + 
Sbjct: 63  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 122

The following BLAST results are available for this feature:

BLAST of Tan0005377 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0005377 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973726.1	5.9e-29	54.07	translocator protein homolog [Cucurbita maxima] >XP_022975172.1 translocator pro...	[more]
XP_023540366.1	1.7e-28	54.07	translocator protein homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022945022.1	3.8e-28	54.07	translocator protein homolog [Cucurbita moschata]	[more]
KAG6597521.1	3.8e-28	54.07	Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038878873.1	5.0e-28	52.02	translocator protein homolog [Benincasa hispida]	[more]

BLAST of Tan0005377 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ICB9	2.9e-29	54.07	translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111474208 PE=3 SV...	[more]
A0A6J1FZS9	1.9e-28	54.07	translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111449384 PE=3 ...	[more]
A0A5D3CWC4	3.5e-27	50.58	Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4DTF2	3.5e-27	50.58	translocator protein homolog OS=Cucumis melo OX=3656 GN=LOC107990392 PE=3 SV=1	[more]
A0A0A0L583	6.0e-27	50.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154290 PE=3 SV=1	[more]

BLAST of Tan0005377 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR10057:SF6	TSPO/MBR FAMILY PROTEIN	coord: 61..99
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 61..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005377.1	Tan0005377.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane