Tan0003396 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAACGGGCCATGGTACATAGGAGGTAAGCCTATCTTGCTTCGTAAGTGGGTTTCGGGTATTCTCCTGCAATCCTTTGTTTTTCATTCGATTCAAGTTTGGTTTAAGTTGTTGAATGTTTCGTTGCACTTGTGGACCCCGAGGGGGTTAAGTTGTGTGGCAAGTGTTGCGGGTCAGCCTCTTTGCTTGGATAAGGCAACAAAAGGTTTTAGTAGGTTGTCGTTTGCTCGTATGTGTGTGGAGGTTCGAGTGGAGGATGGGCTTCCGGCTGAGGTTACTATGCGATTGACGGGTATAGATTATAGAATGCTGGTGGAGTATTCCTGGAAGCGAAAGAAATGTTCTCGGTGTTGTGTGTTTGGCCATAGTGATGACTCATGTCCGCGAAGAGTTGAGGAGGTGGGATTTGTCTGTATTGGGACAGTCAAGGAGTCTAGGTTTACTAGGGAAGAGGGAAGTGGTCCTGGGGATGTGA ATGGAGAACGGGCCATGGTACATAGGAGGTAAGCCTATCTTGCTTCGTAAGTGGGTTTCGGGTATTCTCCTGCAATCCTTTGTTTTTCATTCGATTCAAGTTTGGTTTAAGTTGTTGAATGTTTCGTTGCACTTGTGGACCCCGAGGGGGTTAAGTTGTGTGGCAAGTGTTGCGGGTCAGCCTCTTTGCTTGGATAAGGCAACAAAAGGTTTTAGTAGGTTGTCGTTTGCTCGTATGTGTGTGGAGGTTCGAGTGGAGGATGGGCTTCCGGCTGAGGTTACTATGCGATTGACGGTGATGACTCATGTCCGCGAAGAGTTGAGGAGGTGGGATTTGTCTGTATTGGGACAGTCAAGGAGTCTAGGTTTACTAGGGAAGAGGGAAGTGGTCCTGGGGATGTGA ATGGAGAACGGGCCATGGTACATAGGAGGTAAGCCTATCTTGCTTCGTAAGTGGGTTTCGGGTATTCTCCTGCAATCCTTTGTTTTTCATTCGATTCAAGTTTGGTTTAAGTTGTTGAATGTTTCGTTGCACTTGTGGACCCCGAGGGGGTTAAGTTGTGTGGCAAGTGTTGCGGGTCAGCCTCTTTGCTTGGATAAGGCAACAAAAGGTTTTAGTAGGTTGTCGTTTGCTCGTATGTGTGTGGAGGTTCGAGTGGAGGATGGGCTTCCGGCTGAGGTTACTATGCGATTGACGGTGATGACTCATGTCCGCGAAGAGTTGAGGAGGTGGGATTTGTCTGTATTGGGACAGTCAAGGAGTCTAGGTTTACTAGGGAAGAGGGAAGTGGTCCTGGGGATGTGA MENGPWYIGGKPILLRKWVSGILLQSFVFHSIQVWFKLLNVSLHLWTPRGLSCVASVAGQPLCLDKATKGFSRLSFARMCVEVRVEDGLPAEVTMRLTVMTHVREELRRWDLSVLGQSRSLGLLGKREVVLGM Homology
BLAST of Tan0003396 vs. NCBI nr
Match: KAA0047412.1 (putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa] >TYK14087.1 putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa]) HSP 1 Score: 121.3 bits (303), Expect = 6.2e-24 Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 0
BLAST of Tan0003396 vs. NCBI nr
Match: XP_031740405.1 (uncharacterized protein LOC116403411 [Cucumis sativus]) HSP 1 Score: 119.8 bits (299), Expect = 1.8e-23 Identity = 59/124 (47.58%), Postives = 78/124 (62.90%), Query Frame = 0
BLAST of Tan0003396 vs. NCBI nr
Match: XP_031745056.1 (uncharacterized protein LOC116405235 [Cucumis sativus]) HSP 1 Score: 118.2 bits (295), Expect = 5.3e-23 Identity = 57/122 (46.72%), Postives = 76/122 (62.30%), Query Frame = 0
BLAST of Tan0003396 vs. NCBI nr
Match: XP_022157428.1 (uncharacterized protein LOC111024128 [Momordica charantia]) HSP 1 Score: 117.9 bits (294), Expect = 6.9e-23 Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 0
BLAST of Tan0003396 vs. NCBI nr
Match: XP_031745634.1 (uncharacterized protein LOC116406053 [Cucumis sativus]) HSP 1 Score: 114.8 bits (286), Expect = 5.8e-22 Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 0
BLAST of Tan0003396 vs. ExPASy TrEMBL
Match: A0A5A7TVB8 (Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00750 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 3.0e-24 Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 0
BLAST of Tan0003396 vs. ExPASy TrEMBL
Match: A0A6J1DTC3 (uncharacterized protein LOC111024128 OS=Momordica charantia OX=3673 GN=LOC111024128 PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 3.3e-23 Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 0
BLAST of Tan0003396 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21 Identity = 50/97 (51.55%), Postives = 71/97 (73.20%), Query Frame = 0
BLAST of Tan0003396 vs. ExPASy TrEMBL
Match: A0A5A7V9H8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00880 PE=4 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 5.3e-21 Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 0
BLAST of Tan0003396 vs. ExPASy TrEMBL
Match: A0A5A7V507 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00710 PE=4 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 1.5e-20 Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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