Tan0003396 (gene) Snake gourd v1

Overview
NameTan0003396
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDUF4283 domain-containing protein
LocationLG05: 58562724 .. 58563201 (-)
RNA-Seq ExpressionTan0003396
SyntenyTan0003396
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACGGGCCATGGTACATAGGAGGTAAGCCTATCTTGCTTCGTAAGTGGGTTTCGGGTATTCTCCTGCAATCCTTTGTTTTTCATTCGATTCAAGTTTGGTTTAAGTTGTTGAATGTTTCGTTGCACTTGTGGACCCCGAGGGGGTTAAGTTGTGTGGCAAGTGTTGCGGGTCAGCCTCTTTGCTTGGATAAGGCAACAAAAGGTTTTAGTAGGTTGTCGTTTGCTCGTATGTGTGTGGAGGTTCGAGTGGAGGATGGGCTTCCGGCTGAGGTTACTATGCGATTGACGGGTATAGATTATAGAATGCTGGTGGAGTATTCCTGGAAGCGAAAGAAATGTTCTCGGTGTTGTGTGTTTGGCCATAGTGATGACTCATGTCCGCGAAGAGTTGAGGAGGTGGGATTTGTCTGTATTGGGACAGTCAAGGAGTCTAGGTTTACTAGGGAAGAGGGAAGTGGTCCTGGGGATGTGA

mRNA sequence

ATGGAGAACGGGCCATGGTACATAGGAGGTAAGCCTATCTTGCTTCGTAAGTGGGTTTCGGGTATTCTCCTGCAATCCTTTGTTTTTCATTCGATTCAAGTTTGGTTTAAGTTGTTGAATGTTTCGTTGCACTTGTGGACCCCGAGGGGGTTAAGTTGTGTGGCAAGTGTTGCGGGTCAGCCTCTTTGCTTGGATAAGGCAACAAAAGGTTTTAGTAGGTTGTCGTTTGCTCGTATGTGTGTGGAGGTTCGAGTGGAGGATGGGCTTCCGGCTGAGGTTACTATGCGATTGACGGTGATGACTCATGTCCGCGAAGAGTTGAGGAGGTGGGATTTGTCTGTATTGGGACAGTCAAGGAGTCTAGGTTTACTAGGGAAGAGGGAAGTGGTCCTGGGGATGTGA

Coding sequence (CDS)

ATGGAGAACGGGCCATGGTACATAGGAGGTAAGCCTATCTTGCTTCGTAAGTGGGTTTCGGGTATTCTCCTGCAATCCTTTGTTTTTCATTCGATTCAAGTTTGGTTTAAGTTGTTGAATGTTTCGTTGCACTTGTGGACCCCGAGGGGGTTAAGTTGTGTGGCAAGTGTTGCGGGTCAGCCTCTTTGCTTGGATAAGGCAACAAAAGGTTTTAGTAGGTTGTCGTTTGCTCGTATGTGTGTGGAGGTTCGAGTGGAGGATGGGCTTCCGGCTGAGGTTACTATGCGATTGACGGTGATGACTCATGTCCGCGAAGAGTTGAGGAGGTGGGATTTGTCTGTATTGGGACAGTCAAGGAGTCTAGGTTTACTAGGGAAGAGGGAAGTGGTCCTGGGGATGTGA

Protein sequence

MENGPWYIGGKPILLRKWVSGILLQSFVFHSIQVWFKLLNVSLHLWTPRGLSCVASVAGQPLCLDKATKGFSRLSFARMCVEVRVEDGLPAEVTMRLTVMTHVREELRRWDLSVLGQSRSLGLLGKREVVLGM
Homology
BLAST of Tan0003396 vs. NCBI nr
Match: KAA0047412.1 (putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa] >TYK14087.1 putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 6.2e-24
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 0

Query: 1   MENGPWYIGGKPILLRKWVSGILLQSFVFHSIQVWFKLLNVSLHLWTPRGLSCVASVAGQ 60
           +  GPW +GGKP+LLRKW  GI+L+SFVF S+ VW KL  + + LWT  GL+ VASV G+
Sbjct: 26  LSRGPWNLGGKPMLLRKWTQGIVLESFVFTSVLVWIKLGRIPMELWTEAGLAVVASVVGK 85

Query: 61  PLCLDKATKGFSRLSFARMCVEVRVEDGLPAEVTMRL 98
           PL LD ATK   RLS+AR+CVE+ V+  +PAE+T+ L
Sbjct: 86  PLTLDLATKERRRLSYARVCVELDVDSHMPAEITVNL 122

BLAST of Tan0003396 vs. NCBI nr
Match: XP_031740405.1 (uncharacterized protein LOC116403411 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-23
Identity = 59/124 (47.58%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 1   MENGPWYIGGKPILLRKWVSGILLQSFVFHSIQVWFKLLNVSLHLWTPRGLSCVASVAGQ 60
           +  GPW++GGKP+LLRKW  GI+ +SFVF S+ VW KL  + L LWT  GL+ VAS  G+
Sbjct: 20  LSRGPWHLGGKPMLLRKWTPGIVPESFVFDSVPVWIKLGRIPLELWTDAGLAVVASAIGK 79

Query: 61  PLCLDKATKGFSRLSFARMCVEVRVEDGLPAEVTMRLTVMTHVREELRRWDLSVLGQSRS 120
           PL +D ATK   RLS+AR+CVE+ V++ +PAEVT+ L     +      W        RS
Sbjct: 80  PLLVDLATKERRRLSYARICVELNVDNIMPAEVTVNLRGEEFIVTVTYEWKPKKCNLCRS 139

Query: 121 LGLL 125
            G L
Sbjct: 140 FGHL 143

BLAST of Tan0003396 vs. NCBI nr
Match: XP_031745056.1 (uncharacterized protein LOC116405235 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 5.3e-23
Identity = 57/122 (46.72%), Postives = 76/122 (62.30%), Query Frame = 0

Query: 1   MENGPWYIGGKPILLRKWVSGILLQSFVFHSIQVWFKLLNVSLHLWTPRGLSCVASVAGQ 60
           +  GPW++GGKP+LLRKW  GI+ +SFVF+S+ VW KL  + L LWT  GL+ VAS  G+
Sbjct: 97  LSGGPWHLGGKPMLLRKWTPGIVPESFVFNSVPVWIKLGRIPLELWTDAGLAVVASAIGK 156

Query: 61  PLCLDKATKGFSRLSFARMCVEVRVEDGLPAEVTMRLTVMTHVREELRRWDLSVLGQSRS 120
           PL +D ATK    LS+AR+CVE+ V+  +PAEVT+ L     +      W        RS
Sbjct: 157 PLSVDLATKERRHLSYARICVELNVDSIMPAEVTVNLKGEEFIVTVTYEWKPKKCNLCRS 216

Query: 121 LG 123
            G
Sbjct: 217 FG 218

BLAST of Tan0003396 vs. NCBI nr
Match: XP_022157428.1 (uncharacterized protein LOC111024128 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 6.9e-23
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 0

Query: 1   MENGPWYIGGKPILLRKWVSGILLQSFVFHSIQVWFKLLNVSLHLWTPRGLSCVASVAGQ 60
           + +GPW+IGGK + LR W  GI+ QSF F S+ VW KL N+ L LWTPRGLS + SV G 
Sbjct: 140 LSHGPWHIGGKLLFLRPWTPGIVPQSFSFASVPVWVKLSNIPLELWTPRGLSVIDSVLGV 199

Query: 61  PLCLDKATKGFSRLSFARMCVEVRVEDGLPAEVTMRL 98
           PLCLDKAT+  SRLSFAR+ VE+R     P+ V +++
Sbjct: 200 PLCLDKATEDRSRLSFARISVEMRAASSFPSSVKVKV 236

BLAST of Tan0003396 vs. NCBI nr
Match: XP_031745634.1 (uncharacterized protein LOC116406053 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 5.8e-22
Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 0

Query: 1   MENGPWYIGGKPILLRKWVSGILLQSFVFHSIQVWFKLLNVSLHLWTPRGLSCVASVAGQ 60
           +  GPW++GGKP+LLRKW  GI+ +SFVF S+ V  KL  + L LWT  GL+ VAS  G+
Sbjct: 20  LSRGPWHLGGKPMLLRKWTPGIVPESFVFDSVHVLIKLGRIPLELWTDAGLAVVASAIGK 79

Query: 61  PLCLDKATKGFSRLSFARMCVEVRVEDGLPAEVTMRLTVMTHVREELRRWDLSVLGQSRS 120
           PL +D ATK   RLS+AR+CVE+ V+  +PAEVT+ L     +      W        RS
Sbjct: 80  PLSVDLATKERRRLSYARICVELNVDSIMPAEVTVNLRGEEFIVTVTYEWKPKKCNLCRS 139

Query: 121 LG 123
            G
Sbjct: 140 FG 141

BLAST of Tan0003396 vs. ExPASy TrEMBL
Match: A0A5A7TVB8 (Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00750 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.0e-24
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 0

Query: 1   MENGPWYIGGKPILLRKWVSGILLQSFVFHSIQVWFKLLNVSLHLWTPRGLSCVASVAGQ 60
           +  GPW +GGKP+LLRKW  GI+L+SFVF S+ VW KL  + + LWT  GL+ VASV G+
Sbjct: 26  LSRGPWNLGGKPMLLRKWTQGIVLESFVFTSVLVWIKLGRIPMELWTEAGLAVVASVVGK 85

Query: 61  PLCLDKATKGFSRLSFARMCVEVRVEDGLPAEVTMRL 98
           PL LD ATK   RLS+AR+CVE+ V+  +PAE+T+ L
Sbjct: 86  PLTLDLATKERRRLSYARVCVELDVDSHMPAEITVNL 122

BLAST of Tan0003396 vs. ExPASy TrEMBL
Match: A0A6J1DTC3 (uncharacterized protein LOC111024128 OS=Momordica charantia OX=3673 GN=LOC111024128 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.3e-23
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 0

Query: 1   MENGPWYIGGKPILLRKWVSGILLQSFVFHSIQVWFKLLNVSLHLWTPRGLSCVASVAGQ 60
           + +GPW+IGGK + LR W  GI+ QSF F S+ VW KL N+ L LWTPRGLS + SV G 
Sbjct: 140 LSHGPWHIGGKLLFLRPWTPGIVPQSFSFASVPVWVKLSNIPLELWTPRGLSVIDSVLGV 199

Query: 61  PLCLDKATKGFSRLSFARMCVEVRVEDGLPAEVTMRL 98
           PLCLDKAT+  SRLSFAR+ VE+R     P+ V +++
Sbjct: 200 PLCLDKATEDRSRLSFARISVEMRAASSFPSSVKVKV 236

BLAST of Tan0003396 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 50/97 (51.55%), Postives = 71/97 (73.20%), Query Frame = 0

Query: 1   MENGPWYIGGKPILLRKWVSGILLQSFVFHSIQVWFKLLNVSLHLWTPRGLSCVASVAGQ 60
           +  GPW++GGKP+LLRKW  GI+ +SFVF+S+ VW +L  + + LWT   L+ VASV G+
Sbjct: 26  LSRGPWHLGGKPMLLRKWTLGIVPESFVFNSVPVWIRLGRIPMELWTEAWLAIVASVVGK 85

Query: 61  PLCLDKATKGFSRLSFARMCVEVRVEDGLPAEVTMRL 98
           P+ LD ATK  SRLS+AR+CV++  E  + AE+T+ L
Sbjct: 86  PITLDLATKEHSRLSYARVCVKLEGEFNMRAEITVNL 122

BLAST of Tan0003396 vs. ExPASy TrEMBL
Match: A0A5A7V9H8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00880 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.3e-21
Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 0

Query: 1   MENGPWYIGGKPILLRKWVSGILLQSFVFHSIQVWFKLLNVSLHLWTPRGLSCVASVAGQ 60
           + + PW++GG P+LLRKW S I+ +SFVF+SI VW +L  V + LWT  GL  VASV G+
Sbjct: 96  LSHRPWHLGGTPMLLRKWTSDIVPKSFVFNSILVWIRLDRVPMELWTKSGLVFVASVVGK 155

Query: 61  PLCLDKATKGFSRLSFARMCVEVRVEDGLPAEVTMRL 98
           P+ LD A K   RLS+AR+CVE+ V+  +PAE+T+ L
Sbjct: 156 PVTLDLAIKETRRLSYARVCVELDVDSSMPAEITVNL 192

BLAST of Tan0003396 vs. ExPASy TrEMBL
Match: A0A5A7V507 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00710 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.5e-20
Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 0

Query: 1   MENGPWYIGGKPILLRKWVSGILLQSFVFHSIQVWFKLLNVSLHLWTPRGLSCVASVAGQ 60
           +  GPW++GGKP+L RKW  GI+ +SFVF+S+ VW  L  + + LWT  GL+ VA   G+
Sbjct: 449 LSRGPWHLGGKPMLFRKWTPGIVPESFVFNSVPVWITLGKLPMELWTEAGLAVVAGAVGK 508

Query: 61  PLCLDKATKGFSRLSFARMCVEVRVEDGLPAEVTMRL 98
           P+ LD ATK   RLS+AR+CVE+     +P+E+T+ L
Sbjct: 509 PISLDLATKERRRLSYARVCVELEGGSNMPSEITVNL 545

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0047412.16.2e-2456.70putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa] >... [more]
XP_031740405.11.8e-2347.58uncharacterized protein LOC116403411 [Cucumis sativus][more]
XP_031745056.15.3e-2346.72uncharacterized protein LOC116405235 [Cucumis sativus][more]
XP_022157428.16.9e-2355.67uncharacterized protein LOC111024128 [Momordica charantia][more]
XP_031745634.15.8e-2246.72uncharacterized protein LOC116406053 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5A7TVB83.0e-2456.70Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa ... [more]
A0A6J1DTC33.3e-2355.67uncharacterized protein LOC111024128 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A5A7V5J21.4e-2151.55Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
A0A5A7V9H85.3e-2152.58DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7V5071.5e-2048.45DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 1..81
e-value: 5.1E-17
score: 61.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0003396.1Tan0003396.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity