Tan0001440 (gene) Snake gourd v1

Overview
NameTan0001440
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
LocationLG05: 55390951 .. 55391211 (+)
RNA-Seq ExpressionTan0001440
SyntenyTan0001440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCACCGCTAAGGAGATCATGGGATCCTTACAGGCGATGTTCGAACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTTTCGTATGAAGGAGGGGGCCTCTGTTAGGGAACATGTACTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGTTGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGGATCTCTTCCGAAGAGTTTCCTGTCATTCCGCACTAATGCAGTGA

mRNA sequence

ATGGTCACCGCTAAGGAGATCATGGGATCCTTACAGGCGATGTTCGAACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTTTCGTATGAAGGAGGGGGCCTCTGTTAGGGAACATGTACTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGTTGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGGATCTCTTCCGAAGAGTTTCCTGTCATTCCGCACTAATGCAGTGA

Coding sequence (CDS)

ATGGTCACCGCTAAGGAGATCATGGGATCCTTACAGGCGATGTTCGAACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTTTCGTATGAAGGAGGGGGCCTCTGTTAGGGAACATGTACTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGTTGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGGATCTCTTCCGAAGAGTTTCCTGTCATTCCGCACTAATGCAGTGA

Protein sequence

MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGVVIDEKSQVTFIMDLFRRVSCHSALMQ
Homology
BLAST of Tan0001440 vs. NCBI nr
Match: XP_038880476.1 (uncharacterized protein LOC120072136 [Benincasa hispida])

HSP 1 Score: 110.5 bits (275), Expect = 7.1e-21
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0

Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           MV AKEIM SLQA+F QPSSS  +DA+KYVYNFRMKEG +VREHVLDMMVHFN+ EVNG 
Sbjct: 88  MVMAKEIMDSLQALFGQPSSSAMHDAIKYVYNFRMKEGTNVREHVLDMMVHFNIVEVNGA 147

Query: 61  VIDEKSQVTFIMD 74
           V++EK+Q  FIM+
Sbjct: 148 VMNEKNQGGFIME 160

BLAST of Tan0001440 vs. NCBI nr
Match: XP_038876370.1 (uncharacterized protein LOC120068812, partial [Benincasa hispida])

HSP 1 Score: 108.6 bits (270), Expect = 2.7e-20
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0

Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           MVTAKEIM SLQA+F QPSSS  +DA+K+VYN RMKEG +VREHVLDMMVHFN+ EVN  
Sbjct: 88  MVTAKEIMNSLQALFGQPSSSAMHDAIKWVYNCRMKEGPNVREHVLDMMVHFNITEVNRA 147

Query: 61  VIDEKSQVTFIMD 74
           V++EKSQV FIM+
Sbjct: 148 VMNEKSQVGFIME 160

BLAST of Tan0001440 vs. NCBI nr
Match: XP_038895904.1 (uncharacterized protein LOC120084074 [Benincasa hispida])

HSP 1 Score: 107.5 bits (267), Expect = 6.0e-20
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 0

Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           MVTAKEIM SLQAMFEQ S S+ ++ LKY+YN  MKE  S+REHVLDMMV  NVA+ NG+
Sbjct: 58  MVTAKEIMESLQAMFEQLSKSIRHETLKYIYNCHMKEWVSIREHVLDMMVDINVAQANGI 117

Query: 61  VIDEKSQVTFIMDLFRRV 79
           VIDEKSQV+FIM+  +++
Sbjct: 118 VIDEKSQVSFIMESLQKI 135

BLAST of Tan0001440 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-19
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

BLAST of Tan0001440 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-19
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 87  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 146

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 147 VIDEASQVSFILE 159

BLAST of Tan0001440 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.5e-20
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

BLAST of Tan0001440 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.5e-20
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

BLAST of Tan0001440 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.5e-20
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 205 MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 264

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 265 VIDEASQVSFILE 277

BLAST of Tan0001440 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.5e-20
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

BLAST of Tan0001440 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.5e-20
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0

Query: 1   MVTAKEIMGSLQAMFEQPSSSVHYDALKYVYNFRMKEGASVREHVLDMMVHFNVAEVNGV 60
           M+TA+EIM SLQ MF Q S  + +DALKY+YN RM EGASVREHVL+MMVHFNVAE+NG 
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038880476.17.1e-2173.97uncharacterized protein LOC120072136 [Benincasa hispida][more]
XP_038876370.12.7e-2073.97uncharacterized protein LOC120068812, partial [Benincasa hispida][more]
XP_038895904.16.0e-2066.67uncharacterized protein LOC120084074 [Benincasa hispida][more]
KAA0044955.11.7e-1971.23gag/pol protein [Cucumis melo var. makuwa][more]
KAA0048404.11.7e-1971.23gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5A7SMH88.5e-2071.23Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... [more]
A0A5D3CPJ68.5e-2071.23Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... [more]
A0A5A7V4M18.5e-2071.23Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093... [more]
A0A5A7TU938.5e-2071.23Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259... [more]
A0A5A7TWB98.5e-2071.23Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 3..72
e-value: 1.8E-7
score: 31.0
NoneNo IPR availablePANTHERPTHR35317OS04G0629600 PROTEINcoord: 1..74
NoneNo IPR availablePANTHERPTHR35317:SF8POLYPROTEIN-LIKE PROTEINcoord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0001440.1Tan0001440.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding