Tan0000851 (gene) Snake gourd v1

Overview
NameTan0000851
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
LocationLG10: 16222218 .. 16222661 (-)
RNA-Seq ExpressionTan0000851
SyntenyTan0000851
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTCCAAGTCGTATACTAAGAGAATTGACAACCTAAGAATGCCTAATGGATATCAGCCGCCAAAGTTTCAACAATTCGACGGGAAGGGAAATCTCAAACAACACATCGCTCATTTCGTTGAGACATATGAAAATCTTGGTACTAGAGGAGATCTGCTAGTCAAACAATTTGTTCGAACCCTTAAGGGAAATGCTTTCGACTGGTATACCGACTTTGGGCCAGAAACTATTGACAGTTGGGAACAATTCAAAAAGGAGTTCCTCAACCGTTTCTATAGTAGGAGGCGAACCGTCAGCATGATGGAGTTTACAAATGCTAAGCAACGGAAAGGTAAACCAGTCGTTGATTATATCAACCGTTGGAGAGCTTTAAGCCTCGACTGTAAAGATAGACTCACTGAATTATCTGCAGTTGAAATGTGCATCCAAGGCATGCATTAG

mRNA sequence

ATGTATTCCAAGTCGTATACTAAGAGAATTGACAACCTAAGAATGCCTAATGGATATCAGCCGCCAAAGTTTCAACAATTCGACGGGAAGGGAAATCTCAAACAACACATCGCTCATTTCGTTGAGACATATGAAAATCTTGGTACTAGAGGAGATCTGCTAGTCAAACAATTTGTTCGAACCCTTAAGGGAAATGCTTTCGACTGGCGAACCGTCAGCATGATGGAGTTTACAAATGCTAAGCAACGGAAAGGTAAACCAGTCGTTGATTATATCAACCGTTGGAGAGCTTTAAGCCTCGACTGTAAAGATAGACTCACTGAATTATCTGCAGTTGAAATGTGCATCCAAGGCATGCATTAG

Coding sequence (CDS)

ATGTATTCCAAGTCGTATACTAAGAGAATTGACAACCTAAGAATGCCTAATGGATATCAGCCGCCAAAGTTTCAACAATTCGACGGGAAGGGAAATCTCAAACAACACATCGCTCATTTCGTTGAGACATATGAAAATCTTGGTACTAGAGGAGATCTGCTAGTCAAACAATTTGTTCGAACCCTTAAGGGAAATGCTTTCGACTGGCGAACCGTCAGCATGATGGAGTTTACAAATGCTAAGCAACGGAAAGGTAAACCAGTCGTTGATTATATCAACCGTTGGAGAGCTTTAAGCCTCGACTGTAAAGATAGACTCACTGAATTATCTGCAGTTGAAATGTGCATCCAAGGCATGCATTAG

Protein sequence

MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVRTLKGNAFDWRTVSMMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH
Homology
[Close]
BLAST of Tan0000851 vs. NCBI nr
Match: TYK15513.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 2.2e-52
Identity = 99/120 (82.50%), Postives = 108/120 (90.00%), Query Frame = 0 

Query: 1   MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVR 60
           MYSK YTKRIDNLR+P GYQPPKFQQFDGKGN K+HIAHFVET EN G+RGD LV+QFVR
Sbjct: 19  MYSKPYTKRIDNLRIPLGYQPPKFQQFDGKGNPKKHIAHFVETCENAGSRGDQLVRQFVR 78

Query: 61  TLKGNAFDWRTVSMMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH 120
            LKGNAF+W  VSMME TN KQRKG+PV+DYINRWRALSLDCKD+LTELSAVEMC QG+H
Sbjct: 79  RLKGNAFEWHVVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDKLTELSAVEMCTQGIH 138

[Close]
BLAST of Tan0000851 vs. NCBI nr
Match: KAA0026128.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK11588.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 2.2e-52
Identity = 99/115 (86.09%), Postives = 107/115 (93.04%), Query Frame = 0 

Query: 1   MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVR 60
           MYSK YTKRIDNLRMP GYQPPKFQQFDGKGNLKQHIAHFVET EN G+RGD LV+QFVR
Sbjct: 19  MYSKLYTKRIDNLRMPLGYQPPKFQQFDGKGNLKQHIAHFVETCENTGSRGDQLVRQFVR 78

Query: 61  TLKGNAFDWRTVSMMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMC 116
           +LKGNAF+WR VSMME TN KQRKG+PV+DYINRWRALSLDCKD+LTELSA+EMC
Sbjct: 79  SLKGNAFEWRVVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDKLTELSAIEMC 133

[Close]
BLAST of Tan0000851 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 5.4e-51
Identity = 104/147 (70.75%), Postives = 111/147 (75.51%), Query Frame = 0 

Query: 1   MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVR 60
           MYSK YTKRIDNLRMP GYQPPKFQQFDGKGN KQH+AHFVET EN G+RGD LV+QFVR
Sbjct: 188 MYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVR 247

Query: 61  TLKGNAFDW---------------------------RTVSMMEFTNAKQRKGKPVVDYIN 120
           +LKGNAF+W                           RTVSMME TN KQRKG+PV+DYIN
Sbjct: 248 SLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYIN 307

[Close]
BLAST of Tan0000851 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 5.4e-51
Identity = 104/147 (70.75%), Postives = 111/147 (75.51%), Query Frame = 0 

Query: 1   MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVR 60
           MYSK YTKRIDNLRMP GYQPPKFQQFDGKGN KQH+AHFVET EN G+RGD LV+QFVR
Sbjct: 188 MYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVR 247

Query: 61  TLKGNAFDW---------------------------RTVSMMEFTNAKQRKGKPVVDYIN 120
           +LKGNAF+W                           RTVSMME TN KQRKG+PV+DYIN
Sbjct: 248 SLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYIN 307

[Close]
BLAST of Tan0000851 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 5.4e-51
Identity = 104/147 (70.75%), Postives = 111/147 (75.51%), Query Frame = 0 

Query: 1   MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVR 60
           MYSK YTKRIDNLRMP GYQPPKFQQFDGKGN KQH+AHFVET EN G+RGD LV+QFVR
Sbjct: 188 MYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVR 247

Query: 61  TLKGNAFDW---------------------------RTVSMMEFTNAKQRKGKPVVDYIN 120
           +LKGNAF+W                           RTVSMME TN KQRKG+PV+DYIN
Sbjct: 248 SLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYIN 307

[Close]
BLAST of Tan0000851 vs. ExPASy TrEMBL
Match: A0A5D3CK73 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00300 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 99/115 (86.09%), Postives = 107/115 (93.04%), Query Frame = 0 

Query: 1   MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVR 60
           MYSK YTKRIDNLRMP GYQPPKFQQFDGKGNLKQHIAHFVET EN G+RGD LV+QFVR
Sbjct: 19  MYSKLYTKRIDNLRMPLGYQPPKFQQFDGKGNLKQHIAHFVETCENTGSRGDQLVRQFVR 78

Query: 61  TLKGNAFDWRTVSMMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMC 116
           +LKGNAF+WR VSMME TN KQRKG+PV+DYINRWRALSLDCKD+LTELSA+EMC
Sbjct: 79  SLKGNAFEWRVVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDKLTELSAIEMC 133

[Close]
BLAST of Tan0000851 vs. ExPASy TrEMBL
Match: A0A5D3CUF5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4701G00010 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 99/120 (82.50%), Postives = 108/120 (90.00%), Query Frame = 0 

Query: 1   MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVR 60
           MYSK YTKRIDNLR+P GYQPPKFQQFDGKGN K+HIAHFVET EN G+RGD LV+QFVR
Sbjct: 19  MYSKPYTKRIDNLRIPLGYQPPKFQQFDGKGNPKKHIAHFVETCENAGSRGDQLVRQFVR 78

Query: 61  TLKGNAFDWRTVSMMEFTNAKQRKGKPVVDYINRWRALSLDCKDRLTELSAVEMCIQGMH 120
            LKGNAF+W  VSMME TN KQRKG+PV+DYINRWRALSLDCKD+LTELSAVEMC QG+H
Sbjct: 79  RLKGNAFEWHVVSMMELTNTKQRKGEPVIDYINRWRALSLDCKDKLTELSAVEMCTQGIH 138

[Close]
BLAST of Tan0000851 vs. ExPASy TrEMBL
Match: A0A5D3DTT7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold876G00020 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.4e-51
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0 

Query: 1   MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVR 60
           +YSK YTKRIDNLRMPNGYQPPKFQQFDGKGN KQH+AHF+ET E +GTRGDLLVKQF+R
Sbjct: 188 LYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETVGTRGDLLVKQFIR 247

Query: 61  TLKGNAFDW---------------------------RTVSMMEFTNAKQRKGKPVVDYIN 120
           TLKGNAFDW                           R VSMME TN +Q+KG+ V+DYIN
Sbjct: 248 TLKGNAFDWYIDLELESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVIDYIN 307

[Close]
BLAST of Tan0000851 vs. ExPASy TrEMBL
Match: A0A5A7SXL9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G001290 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.4e-51
Identity = 104/147 (70.75%), Postives = 111/147 (75.51%), Query Frame = 0 

Query: 1   MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVR 60
           MYSKSYTKRIDNLRMP GYQPPKFQQFDG+GN KQHIAHFVET EN G+RGD LVKQFVR
Sbjct: 190 MYSKSYTKRIDNLRMPLGYQPPKFQQFDGRGNPKQHIAHFVETCENAGSRGDQLVKQFVR 249

Query: 61  TLKGNAFDW---------------------------RTVSMMEFTNAKQRKGKPVVDYIN 120
           +LKGNAF+W                           R VSMME TN KQRKG+PV+DYIN
Sbjct: 250 SLKGNAFEWYTDLEPEVIDNWEQLEIEFLNRFYSTRRVVSMMELTNTKQRKGEPVIDYIN 309

[Close]
BLAST of Tan0000851 vs. ExPASy TrEMBL
Match: A0A5A7UR51 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00520 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.4e-51
Identity = 102/147 (69.39%), Postives = 110/147 (74.83%), Query Frame = 0 

Query: 1   MYSKSYTKRIDNLRMPNGYQPPKFQQFDGKGNLKQHIAHFVETYENLGTRGDLLVKQFVR 60
           +YSK YTKRIDN+RMP+GYQPPKFQQFDGKGN KQH+AHF+ETYE  GTRGDLLVKQFVR
Sbjct: 41  LYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETYETAGTRGDLLVKQFVR 100

Query: 61  TLKGNAFDW---------------------------RTVSMMEFTNAKQRKGKPVVDYIN 120
           TLKGNAFDW                           R VSM+E T  KQRKG+PV+DYIN
Sbjct: 101 TLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGEPVIDYIN 160

The following BLAST results are available for this feature:
BLAST of Tan0000851 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0000851 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK15513.12.2e-5282.50ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0026128.12.2e-5286.09ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK11588.1 ty3-gyp... [more]
XP_031739134.15.4e-5170.75uncharacterized protein LOC116402863 [Cucumis sativus][more]
XP_031742032.15.4e-5170.75uncharacterized protein LOC116404025 [Cucumis sativus][more]
XP_031742199.15.4e-5170.75uncharacterized protein LOC105435721 [Cucumis sativus][more]
BLAST of Tan0000851 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CK731.1e-5286.09Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3CUF51.1e-5282.50Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DTT74.4e-5169.39Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SXL94.4e-5170.75Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7UR514.4e-5169.39Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of Tan0000851 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0000851.1Tan0000851.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid
molecular_function GO:0003676 nucleic acid binding