Spg039955 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg039955
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold10: 45329613 .. 45333511 (-)
RNA-Seq ExpressionSpg039955
SyntenySpg039955
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACACGGCAACATCCATGTTTCAGAAGATGACCAAATTCTCGCCTAAAATCAATCAGACTTCAAGTAAACTGATCTGGAAACATAAAAGCCAGAAGAAAGTCAAGGTGTTCTTGTGGTCTTTAGCCTACCGTAGCCTAAATACTGATGATAAAATCCAAAAGAAGTTCAAAAGCTGGTACTTGGATCATCTTTTTATCCATTGTGGTTTTGCGAAGAAAGTGTGGAACTTTGTGGCTAATCTTCTGGGTATCTCCTTCTGTTTACCCAATAAAATTGATGATTGGTTAAGTGAAGGGCTGGCTGCATGGAACTTAAGGGAAAAGGCCAAGATTATGGCTGGTTGTGCCTTTAGGGCTACTCTATGGCCTTTGTGGAAGGAAAGGAACTCTAGAACCTTTGAAGACAAATCGCCTAGCTTAGATTTTTTCTGTGACAATGTTCAAAATACAGCTTCTTGGTGGATATCTCTACACAAAAAATCTTTTGGTAATTACACCTTGCTTTCGATTATTAAAGATTGGCAAGCTCTTCTGTATTAGAGTCCAGGCGAGGGCGATCTCCTTCCTCGGCCCTTAGGTTGTCTCCTTCTTTTGTGATTAATATATATCTTTGATGTTTCTTATCAAAAAAAATAATAATAATTTAGTCAAAGAAAATCTGAAGGGAAACATCGAGTCCAAATCCCAAATCTCTTCACATGATCCCTTGCACCCAAGTAGAAAATAATAATTTTAATTAAAAAAAAAACCCACCTATTCCTCCCTAACCAAATAAATGAAAGGCTGACAAAAAAAAAATCCACCAAAGGAATCCGCCCATCTCAAAAAGGAGAATTCAGAGGAACCTAATTCATACAAAAACCAAACTAAGGGCTAAAAACACACCAGAAGTCTACAGATTCCTCTACCACAAGATGCAATCTAAGTCCAACAAAACCTATTTATTACAGACGATGGATTCAAAGATGTATAAGATCCTCTATAACCTCAAATCTCTCTCCTATGACCTATCAATGTATGAAAAGAATGATAATATATATGAAGCTTGTGGGACTACTACATAGAAACCTTTTCTTTCTTGGAAGAAGTAACAAACTTGTAAATGATAGATAAAAAGGAATAAAAATGTTCAAGACTCCCCAAGGGAGAGAAAAGAAAACAAAATGACCAAAGAATAAATAAAAAGACAGATTACAAGAGCCTGAAAAAAACCAACTATCCAGAGGATCCAAAGAACACCCAACAAATGACAAAAGCAGTGACAAACTAAACACAAAAGATTTTAAGAACAAAGACAACCAATAAACAAGCCAACAAATTATCTGCTTCTTAAACCATGAGTAGTGAGATTCGCAGCATTGGGCAAGCTACTGACAATTTGATGTATATGCCAAGAAGACTTCTAATAATATAAAGTATTTAAAACAAGAACTGGATTCAAACTAATACAGGTGATCCACCTTGGTTCAGTAAGGTTTCACAGGCATCCTTGAAAATTTATCTCCACAGGTATACTTCTCATGATGCTTATATTTCATCTCTTTTCTAAGAGTCATTTGATTAATCTTCAACATTTTAGGTTTTTTAGAAATTTGAACTATTAGAAAGTAGGTGAATTTATTTTCCCTGCATGAAAGACTCTATCCCACCACAATTTTCATAACTTTGTTAGTCTCTGACTCTCTATAATTGTGCTTTTAAGTGGCAGGTGATAGTGCAAGTTTTTTTAAACAAGAAACAAAATTTTTCATTGACAAAATGAATAGAGGTTAATGCTCAAAAGATACGATACAAACTCCAGAAGGGATTGAAGATAAAACAAAAAATACCAAAAATTACAAATGAGAAATAAATGCATCCCAATTCAAGTAAATATCCTGTAAAGAAAATGTATCAAAAAGCTTGGAGAGAGAACCATGAAGAAGCTTTCATTCTTGTCGAATTCAACCAATCAAACCAAGGAATTTGTTTGTTTTCAAAAATTCTCAAATTACTCTCCATCCACAATTCCGAAAGAAGAGCTTTAACTACACTTATCCATAAAAGATGAGGTTTCATCACCAAAGAAGGCCCAAGGATTATCTGATGAAGGTTATCTTTCAAATTGAGAGAGAAAACCCAAGAAATCTTGAATAATCCAAACAGCTTGTAACAACACTTCAATTTTGAAGTGTAGAGATCGATCACCCTTCAATGAGCTTTAATCGCATTTATCCATAAAATTGATAGCGCAAGATGGATGGGATATGGATCACATGCCTCCAAATTCACATCATGTCTGCAGATTGTAGTTTTTAGTTTTTAGAGGTAGAGATGGTATGAATGGGGATCATCTCTAATTGCAATGTTCTGTCGCTTATAACTCGTGAGAAAAGCTACCTTCCATCTTCAGTATCAGTTGGGGCAAAGAGTTTGAGAAGGAATCCAAGAAAGAAAGATCTTTTTCGTTTTTCTATTTTTCCAATCATTTGGTATATTTGAAAACAAATGAATTCTAGAAACTCTCAGTATTGTCTGGAGGAAAACTATCTTGTGCGGCTTAAAATGTTGTTTCTTATGTCTTTGTGTGCATCTATGACAAAGTTCTTTTTATCTAGATGTTCCTCTTTTTCTTAATCTTCACGCTAGGATTTCATGTTTAAATACATGATCTTCTATTTGAAGAGACTTACTCTCTTATTTCCTTTTTTTTAATTGAAAAACTGAACTTTCATATAGGCAAATCAAACAATACAAACAGTGAATTCGACCCCACAACAAAAGAAGCAAGAAAGAAAAAGAAAAATAGAGCCCAACAAAAATACAAAAATTACAAGGGCTCTAATAAAAAGGGGAAAAGGCAGTGCACAGATAAAATGTAACCGAGATCAGATTAAAAAATGAAGGTTTCAAATTTTAAAAATGCTCAAATCATAAGTGAATGACCCAAATCATAAATGGATGACCTGAACTTGGGATACAAAGGACAAGCCAGCAGCTTCAATAGTCAAAAGAAGTCCATGCAAAGACCATGTCTGCAAACTGGTAATTGAACTCCGAGACAGCATAGATATTGAATTCACTGTTGCCGTAACTAATGTTGACAGAGCCATCCCTCCTGCACTGAAGGTAAAGGAAAATGTATAGTTGAGGACATTTTGAAATATAAGTACATCAGCTCAGCACAAAAGGAAACACTTTTTTTAACAAAAAATGAACTTTTCATCGATAGAGAAGAAGGGAAAAAAAAAAAGGTTCAAGGATGCAAACTCCTGTAAGGGAGTGAAAAGAAAATCAAATTAACCAAACTAATAAAGAAAAGATCTTCAAACATTTCATGAGTCGACATACTTTTTTTAAAAAAAGGATTTAAGAATGCCCAGAAAAGATCTAGGATGTCTGAGAAGAAAAATTGAGAAACCAACAAGCCAAAGTCATCCCACCGAGCTACAAAAACTGCATCATGGTTCAGCGCCCAAAAAGAATTCGCTGGAAAGAAGTGCAGCAATAGAGCCCTATCCCCGCTGGTCTGTTCTTTGTGTTGGAGGAATGCTGAGTCTTTGGACCACATTTTTCTCCATTGCCCTTTTGCTTATGCAGCTTGGAGGTGGCTGTTGGGGGAATTTAACATCTATGTTTCTTTCCCTGATAAGATTGATGTGTGGCTGGATGAAGTGTTATCGGGTTGAAATTTTGAAGGCAGAGGAAAGATTTTGTGGAGTATGGCTGCTAGAGCTTTGATGTGGAACCTTTGGCTTGAGAGAAATCGTCGGGTCTTTGAAGATAAGAGCTCTCCGTTTGATTCCTTTTGTTCTAATGTTAAATATTCTGCTTCTTGGTGGTGTACAAAGCACAGGAAATTCTTTTGTAATTACAACTTGTCCATGATAGTTTCAAATTGGACTGCCTTTGTTTAG

mRNA sequence

ATGTACACGGCAACATCCATGTTTCAGAAGATGACCAAATTCTCGCCTAAAATCAATCAGACTTCAAGTAAACTGATCTGGAAACATAAAAGCCAGAAGAAAGTCAAGGTGTTCTTGTGGTCTTTAGCCTACCGTAGCCTAAATACTGATGATAAAATCCAAAAGAAGTTCAAAAGCTGGTACTTGGATCATCTTTTTATCCATTGTGGTTTTGCGAAGAAAGTGTGGAACTTTGTGGCTAATCTTCTGGGTATCTCCTTCTGTTTACCCAATAAAATTGATGATTGGTTAAGTGAAGGGCTGGCTGCATGGAACTTAAGGGAAAAGGCCAAGATTATGGCTGGTTGTGCCTTTAGGGCTACTCTATGGCCTTTGTGGAAGGAAAGGAACTCTAGAACCTTTGAAGACAAATCGCCTAGCTTAGATTTTTTCTGTGACAATGTTCAAAATACAGCTTCTTGGTGGATATCTCTACACAAAAAATCTTTTGGTGATCCACCTTGGTTCAGTAAGGTTTCACAGGCATCCTTGAAAATTTATCTCCACAGCATAGATATTGAATTCACTGTTGCCGTAACTAATGTTGACAGAGCCATCCCTCCTGCACTGAAGCTTGGAGGCAGAGGAAAGATTTTGTGGAGTATGGCTGCTAGAGCTTTGATGTGGAACCTTTGGCTTGAGAGAAATCGTCGGGTCTTTGAAGATAAGAGCTCTCCGTTTGATTCCTTTTGTTCTAATGTTAAATATTCTGCTTCTTGGTGGTGTACAAAGCACAGGAAATTCTTTTGTAATTACAACTTGTCCATGATAGTTTCAAATTGGACTGCCTTTGTTTAG

Coding sequence (CDS)

ATGTACACGGCAACATCCATGTTTCAGAAGATGACCAAATTCTCGCCTAAAATCAATCAGACTTCAAGTAAACTGATCTGGAAACATAAAAGCCAGAAGAAAGTCAAGGTGTTCTTGTGGTCTTTAGCCTACCGTAGCCTAAATACTGATGATAAAATCCAAAAGAAGTTCAAAAGCTGGTACTTGGATCATCTTTTTATCCATTGTGGTTTTGCGAAGAAAGTGTGGAACTTTGTGGCTAATCTTCTGGGTATCTCCTTCTGTTTACCCAATAAAATTGATGATTGGTTAAGTGAAGGGCTGGCTGCATGGAACTTAAGGGAAAAGGCCAAGATTATGGCTGGTTGTGCCTTTAGGGCTACTCTATGGCCTTTGTGGAAGGAAAGGAACTCTAGAACCTTTGAAGACAAATCGCCTAGCTTAGATTTTTTCTGTGACAATGTTCAAAATACAGCTTCTTGGTGGATATCTCTACACAAAAAATCTTTTGGTGATCCACCTTGGTTCAGTAAGGTTTCACAGGCATCCTTGAAAATTTATCTCCACAGCATAGATATTGAATTCACTGTTGCCGTAACTAATGTTGACAGAGCCATCCCTCCTGCACTGAAGCTTGGAGGCAGAGGAAAGATTTTGTGGAGTATGGCTGCTAGAGCTTTGATGTGGAACCTTTGGCTTGAGAGAAATCGTCGGGTCTTTGAAGATAAGAGCTCTCCGTTTGATTCCTTTTGTTCTAATGTTAAATATTCTGCTTCTTGGTGGTGTACAAAGCACAGGAAATTCTTTTGTAATTACAACTTGTCCATGATAGTTTCAAATTGGACTGCCTTTGTTTAG

Protein sequence

MYTATSMFQKMTKFSPKINQTSSKLIWKHKSQKKVKVFLWSLAYRSLNTDDKIQKKFKSWYLDHLFIHCGFAKKVWNFVANLLGISFCLPNKIDDWLSEGLAAWNLREKAKIMAGCAFRATLWPLWKERNSRTFEDKSPSLDFFCDNVQNTASWWISLHKKSFGDPPWFSKVSQASLKIYLHSIDIEFTVAVTNVDRAIPPALKLGGRGKILWSMAARALMWNLWLERNRRVFEDKSSPFDSFCSNVKYSASWWCTKHRKFFCNYNLSMIVSNWTAFV
Homology
BLAST of Spg039955 vs. NCBI nr
Match: TYK31299.1 (protein FAM91A1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 4.0e-17
Identity = 54/124 (43.55%), Postives = 71/124 (57.26%), Query Frame = 0

Query: 2   YTATSMFQKMTKFSPKINQTSSKLIWKHKSQKKVKVFLWSLAYRSLNTDDKIQKKFKSWY 61
           ++   +F KMT  + K N ++  LIWK K  KKVK FLWSLAYRSLN  +K+Q+KF +  
Sbjct: 207 FSTKFIFSKMTMGAAKANFSTVNLIWKLKISKKVKFFLWSLAYRSLNIQNKLQRKFPNGS 266

Query: 62  L---------------DHLFIHCGFAKKVWNFVANLLGISFCLPNKIDDWLSEGLAAWNL 111
           L               DHLF+HC FA K WN + +L  +  CLP KIDD + +GL   + 
Sbjct: 267 LSPSICYLCLKEAEAFDHLFLHCDFAFKGWNRIFDLFALDDCLPKKIDDGMKDGLTGGSF 326

BLAST of Spg039955 vs. NCBI nr
Match: ONI36148.1 (hypothetical protein PRUPE_1G572100 [Prunus persica])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-16
Identity = 51/152 (33.55%), Postives = 74/152 (48.68%), Query Frame = 0

Query: 25  LIWKHKSQKKVKVFLWSLAYRSLNTDDKIQKKFKSWYL---------------DHLFIHC 84
           L+WK KS  KVKVF+W +A   +NT D +Q+K    YL               DHLF+HC
Sbjct: 118 LVWKAKSPPKVKVFVWLVALGKVNTSDLVQRKRPFMYLSPQWCVLCKLCEESVDHLFLHC 177

Query: 85  GFAKKVWNFVANLLGISFCLPNKIDDWLSEGLAAWNLREKAKIMAGCAFRATLWPLWKER 144
            F+  +W  +   +G  + +P    D+L      W L +    + GC   +  W +W ER
Sbjct: 178 PFSLSLWWLLWREVGTVWVIPKGCSDFLCSDFVVWGLGKLTSTLWGCLVHSVFWIIWMER 237

Query: 145 NSRTFED-KSPSLDFFCDNVQNTASWWISLHK 161
           N R FED K   +    D V+  A++W S+ K
Sbjct: 238 NRRIFEDYKGVRVSDLWDRVKYWAAFWASVTK 269

BLAST of Spg039955 vs. NCBI nr
Match: VVA21329.1 (Hypothetical predicted protein [Prunus dulcis])

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-15
Identity = 51/152 (33.55%), Postives = 73/152 (48.03%), Query Frame = 0

Query: 25  LIWKHKSQKKVKVFLWSLAYRSLNTDDKIQKKFKSWYL---------------DHLFIHC 84
           L+WK KS  KVKVF+W +A   +NT D +Q+K    YL               DHLF+HC
Sbjct: 118 LVWKAKSPPKVKVFVWLVALGKVNTSDLVQRKRPFMYLSPQWCVLCKLCEESVDHLFLHC 177

Query: 85  GFAKKVWNFVANLLGISFCLPNKIDDWLSEGLAAWNLREKAKIMAGCAFRATLWPLWKER 144
            F+  +W  +   +G  + +     D+L      W L +    + GC   +  W +W ER
Sbjct: 178 PFSLSLWWLLWREVGTVWVILKGCSDFLCSDFVVWGLGKLTSTLWGCLVHSVFWIIWMER 237

Query: 145 NSRTFED-KSPSLDFFCDNVQNTASWWISLHK 161
           N R FED K   L    D V+  A++W S+ K
Sbjct: 238 NRRIFEDYKGVRLSDLWDRVKYWAAFWASVTK 269

BLAST of Spg039955 vs. NCBI nr
Match: CAN62833.1 (hypothetical protein VITISV_012130 [Vitis vinifera])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-15
Identity = 69/289 (23.88%), Postives = 124/289 (42.91%), Query Frame = 0

Query: 2   YTATSMFQKMTKFSPKINQTSSKLIWKHKSQKKVKVFLWSLAYRSLNTDDKIQ--KKFKS 61
           ++  S F  +++ S  +    +K +W  K   KVK   W +A+  +NT+DK+Q  + +K+
Sbjct: 559 FSVKSFFYALSRDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKA 618

Query: 62  ----W---------YLDHLFIHCGFAKKVWNFVANLLGISFCLPNKIDDWLSEGLAAWNL 121
               W          +DHLF+HC     +W+ + NL+G+ +  P  I+D L         
Sbjct: 619 LCPQWCILCKGNGESIDHLFLHCPITIGLWHRLFNLVGVIWVPPRSIEDMLVISFKGLGN 678

Query: 122 REKAKIMAGCAFRATLWPLWKERNSRTFEDKSPSLDFFCDNVQNTASWWISLHKKSFGDP 181
             + KI+   A    +W +W+ERN+R FEDK  + +   D ++  +S W S  +   G P
Sbjct: 679 SVRGKILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGVP 738

Query: 182 PWFSKVS---QASLKIYLHSIDIEFTVAVTNVDRAIPPALKLGGRGKILWSMAARALMWN 241
               +++   +  L+  +H ++ E       +D                 S      +  
Sbjct: 739 LSILQINWIGEKKLQDEIHQLNAEVKERDIYID-----------------SRKKEIELLQ 798

Query: 242 LWLERNRRVFEDKSSPFDSFCSNVKYS--ASWWCTKHRKFFCNYNLSMI 271
             + ++R  F D  +  D      KY     W   K +K FCN+ L ++
Sbjct: 799 SLISQSRDGFNDYKAQRDKLQDERKYDFVTLWSIMKRQKLFCNFLLGIV 830

BLAST of Spg039955 vs. NCBI nr
Match: RVW15141.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-15
Identity = 54/181 (29.83%), Postives = 88/181 (48.62%), Query Frame = 0

Query: 1   MYTATSMFQKMTKFSPKINQTSSKLIWKHKSQKKVKVFLWSLAYRSLNTDDKIQKKFKSW 60
           ++T  S F  +++ S   +   +KL+W  +   K+K F+W +A++ +NT+D +Q +    
Sbjct: 521 LFTVKSFFLALSQISSLPSVFPTKLVWNSQVPFKIKSFVWLVAHKKVNTNDMLQLRRPYK 580

Query: 61  YL---------------DHLFIHCGFAKKVWNFVANLLGISFCLPNKIDDWLSEGLAAWN 120
            L               DHLF+HC     +W+ +  L  I +  P  I D LS     + 
Sbjct: 581 ALSPDICMLCMEQGETEDHLFLHCSLTMGLWHRLFQLTKIDWVPPRSICDMLSTNFNGFG 640

Query: 121 LREKAKIMAGCAFRATLWPLWKERNSRTFEDKSPSLDFFCDNVQNTASWWISLHKKSFGD 167
             ++  I+   A  A LW +W+ERN+R FEDKS + +   D +   AS W+S  K   G 
Sbjct: 641 SSKRGIILWQAACIALLWVVWRERNARIFEDKSRNSENLWDMIHFLASLWVSCSKVFKGF 700

BLAST of Spg039955 vs. ExPASy TrEMBL
Match: A0A5D3E632 (Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005970 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-17
Identity = 54/124 (43.55%), Postives = 71/124 (57.26%), Query Frame = 0

Query: 2   YTATSMFQKMTKFSPKINQTSSKLIWKHKSQKKVKVFLWSLAYRSLNTDDKIQKKFKSWY 61
           ++   +F KMT  + K N ++  LIWK K  KKVK FLWSLAYRSLN  +K+Q+KF +  
Sbjct: 207 FSTKFIFSKMTMGAAKANFSTVNLIWKLKISKKVKFFLWSLAYRSLNIQNKLQRKFPNGS 266

Query: 62  L---------------DHLFIHCGFAKKVWNFVANLLGISFCLPNKIDDWLSEGLAAWNL 111
           L               DHLF+HC FA K WN + +L  +  CLP KIDD + +GL   + 
Sbjct: 267 LSPSICYLCLKEAEAFDHLFLHCDFAFKGWNRIFDLFALDDCLPKKIDDGMKDGLTGGSF 326

BLAST of Spg039955 vs. ExPASy TrEMBL
Match: A5AUH3 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_012130 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.3e-16
Identity = 69/289 (23.88%), Postives = 124/289 (42.91%), Query Frame = 0

Query: 2   YTATSMFQKMTKFSPKINQTSSKLIWKHKSQKKVKVFLWSLAYRSLNTDDKIQ--KKFKS 61
           ++  S F  +++ S  +    +K +W  K   KVK   W +A+  +NT+DK+Q  + +K+
Sbjct: 559 FSVKSFFYALSRDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKA 618

Query: 62  ----W---------YLDHLFIHCGFAKKVWNFVANLLGISFCLPNKIDDWLSEGLAAWNL 121
               W          +DHLF+HC     +W+ + NL+G+ +  P  I+D L         
Sbjct: 619 LCPQWCILCKGNGESIDHLFLHCPITIGLWHRLFNLVGVIWVPPRSIEDMLVISFKGLGN 678

Query: 122 REKAKIMAGCAFRATLWPLWKERNSRTFEDKSPSLDFFCDNVQNTASWWISLHKKSFGDP 181
             + KI+   A    +W +W+ERN+R FEDK  + +   D ++  +S W S  +   G P
Sbjct: 679 SVRGKILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGVP 738

Query: 182 PWFSKVS---QASLKIYLHSIDIEFTVAVTNVDRAIPPALKLGGRGKILWSMAARALMWN 241
               +++   +  L+  +H ++ E       +D                 S      +  
Sbjct: 739 LSILQINWIGEKKLQDEIHQLNAEVKERDIYID-----------------SRKKEIELLQ 798

Query: 242 LWLERNRRVFEDKSSPFDSFCSNVKYS--ASWWCTKHRKFFCNYNLSMI 271
             + ++R  F D  +  D      KY     W   K +K FCN+ L ++
Sbjct: 799 SLISQSRDGFNDYKAQRDKLQDERKYDFVTLWSIMKRQKLFCNFLLGIV 830

BLAST of Spg039955 vs. ExPASy TrEMBL
Match: A0A438BVX7 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1293 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-15
Identity = 54/181 (29.83%), Postives = 88/181 (48.62%), Query Frame = 0

Query: 1   MYTATSMFQKMTKFSPKINQTSSKLIWKHKSQKKVKVFLWSLAYRSLNTDDKIQKKFKSW 60
           ++T  S F  +++ S   +   +KL+W  +   K+K F+W +A++ +NT+D +Q +    
Sbjct: 521 LFTVKSFFLALSQISSLPSVFPTKLVWNSQVPFKIKSFVWLVAHKKVNTNDMLQLRRPYK 580

Query: 61  YL---------------DHLFIHCGFAKKVWNFVANLLGISFCLPNKIDDWLSEGLAAWN 120
            L               DHLF+HC     +W+ +  L  I +  P  I D LS     + 
Sbjct: 581 ALSPDICMLCMEQGETEDHLFLHCSLTMGLWHRLFQLTKIDWVPPRSICDMLSTNFNGFG 640

Query: 121 LREKAKIMAGCAFRATLWPLWKERNSRTFEDKSPSLDFFCDNVQNTASWWISLHKKSFGD 167
             ++  I+   A  A LW +W+ERN+R FEDKS + +   D +   AS W+S  K   G 
Sbjct: 641 SSKRGIILWQAACIALLWVVWRERNARIFEDKSRNSENLWDMIHFLASLWVSCSKVFKGF 700

BLAST of Spg039955 vs. ExPASy TrEMBL
Match: A0A438GPP0 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_8 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-15
Identity = 51/181 (28.18%), Postives = 91/181 (50.28%), Query Frame = 0

Query: 1   MYTATSMFQKMTKFSPKINQTSSKLIWKHKSQKKVKVFLWSLAYRSLNTDDKIQ--KKFK 60
           ++T  S F  +++ S   +   +KL+W  +   K+K F+W +A++ +NT+D +Q  + +K
Sbjct: 223 LFTVKSFFLALSQISGLPSVFPTKLVWNSQVPFKIKFFVWLVAHKKVNTNDMLQLRRPYK 282

Query: 61  SW-------------YLDHLFIHCGFAKKVWNFVANLLGISFCLPNKIDDWLSEGLAAWN 120
           +               +DHLF+HC     +W+ +  L  I +  P  + D +S     + 
Sbjct: 283 ALSPDICMLCMERGETVDHLFLHCSMTMGLWHRLFQLTKIDWVPPRSVFDMISINFNGFG 342

Query: 121 LREKAKIMAGCAFRATLWPLWKERNSRTFEDKSPSLDFFCDNVQNTASWWISLHKKSFGD 167
             ++  ++   A  A LW +W+ERN+R FEDKS + +   D +   AS W+S  K   G 
Sbjct: 343 SSKRGIVLWQAACIAILWVVWRERNARIFEDKSRNSENLWDMIHFLASLWVSCSKVFKGI 402

BLAST of Spg039955 vs. ExPASy TrEMBL
Match: A5BPI6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008538 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-15
Identity = 51/181 (28.18%), Postives = 91/181 (50.28%), Query Frame = 0

Query: 1    MYTATSMFQKMTKFSPKINQTSSKLIWKHKSQKKVKVFLWSLAYRSLNTDDKIQ--KKFK 60
            ++T  S F  +++ S   +   +KL+W  +   K+K F+W +A++ +NT+D +Q  + +K
Sbjct: 1137 LFTVKSFFLALSQISGLPSVFPTKLVWNSQVPFKIKFFVWLVAHKKVNTNDMLQLRRPYK 1196

Query: 61   SW-------------YLDHLFIHCGFAKKVWNFVANLLGISFCLPNKIDDWLSEGLAAWN 120
            +               +DHLF+HC     +W+ +  L  I +  P  + D +S     + 
Sbjct: 1197 ALSPDICMLCMERGETVDHLFLHCSMTMGLWHRLFQLTKIDWVPPRSVFDMISINFNGFG 1256

Query: 121  LREKAKIMAGCAFRATLWPLWKERNSRTFEDKSPSLDFFCDNVQNTASWWISLHKKSFGD 167
              ++  ++   A  A LW +W+ERN+R FEDKS + +   D +   AS W+S  K   G 
Sbjct: 1257 SSKRGIVLWQAACIAILWVVWRERNARIFEDKSRNSENLWDMIHFLASLWVSCSKVFKGI 1316

BLAST of Spg039955 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.5e-06
Identity = 41/146 (28.08%), Postives = 60/146 (41.10%), Query Frame = 0

Query: 26  IWKHKSQKKVKVFLWSLAYRSLNTDDKIQKKF------------KSWYLDHLFIHCGFAK 85
           IWK K+  K+K FLW L   +L T D ++++             +     HLF  C +A+
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77

Query: 86  KVWNFVA----NLLGISFCLPNKIDDWLSEGLAAWNLREKAKIMAGCAFRATLWPLWKER 145
           +VW         L      +  K++  LS  LA  N + +   +A       LW LWK R
Sbjct: 78  QVWRASGIPHQELRTTGITMETKMELLLSSCLA--NRQPQLFNLA----IWILWRLWKSR 137

Query: 146 NSRTFEDKSPSLDFFCDNVQNTASWW 156
           N   F+ KS S        +N    W
Sbjct: 138 NQLVFQQKSISWQNTLQRARNDVQEW 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK31299.14.0e-1743.55protein FAM91A1 [Cucumis melo var. makuwa][more]
ONI36148.11.5e-1633.55hypothetical protein PRUPE_1G572100 [Prunus persica][more]
VVA21329.11.0e-1533.55Hypothetical predicted protein [Prunus dulcis][more]
CAN62833.11.3e-1523.88hypothetical protein VITISV_012130 [Vitis vinifera][more]
RVW15141.13.8e-1529.83putative ribonuclease H protein [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E6322.0e-1743.55Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0059... [more]
A5AUH36.3e-1623.88Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
A0A438BVX71.8e-1529.83Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1293 ... [more]
A0A438GPP04.1e-1528.18Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_8 PE=... [more]
A5BPI64.1e-1528.18Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008538 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G25270.11.5e-0628.08Ribonuclease H-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg039955.1Spg039955.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular anatomical structure