Spg039297 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg039297
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CLAVATA3/ESR (CLE)-related protein 25
Location	scaffold10: 43788208 .. 43790512 (-)
RNA-Seq Expression	Spg039297
Synteny	Spg039297

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTGGCGAAGAGTCCCAACCTTGCAGGGACCTCGTTTACTCACATGGTTCAGAGTCAATTTAGAGTAATTAGAATTCTTGTAACCAGACAAGCGAAGCTGCTTGCCTCATGAAATTAAGAAGGAAATTGCTCTTAGGGGCATCGATTTACTTTGATATCAGATACTAGCTTCTCAGTTGAGAATGGCTTTGATTTTGCCTTCAGTATTTGATTTGAGCCAGAAACTGTATGCATCAAGCTTAATTCATTGTGTACTGTAGGCTTGGGACTGTACCGCATCTAAATGAATTCTATTTTTCATTTTTCATTGTTCTCTGATAGCAATTGCTCATCTCTTTTTCCAAAACAAGGTTTAAAAGCAATGGTTTCCTTGAAATAATTGGGCGCTGATGAAATGCCAGACATTCAAAATCGACTGCCTCGATTTTCTTCAGGTTAGCAATCATTTCTCTGATGACTATTTAACATTTGACCTAATTGGGATTAACACTTTAGATTCTTCACAAAATTAGTCTAATATGACTATCTTGGTGTTAAGTGCTCTGAGTTTATGAGATAGTGAGGTCCCCCAATTTCCCTTTTGTAGCTATCGGAAAAATGCAGAAACTAAGGCAAAGATAGAGGAGCTGTTGGACACATTATTCCACAATAAAGTGACATAAATAACTACTTTTCTGCGTTTAAATCAGATTCCTTCTCTCTCTTCCCACGCGAACACAAAGTACAGTTTTACTGATACAGTCTTTAAATACAAACAAAACAGCCTTACAACCCGCCAAGACCTCAGCCAACCGAATTAGCTTTACATCTCTCTTCTTTCTTCTTTCTTAGTCCATAGTTATCCCTCTTCACTTCCATACCCTGAAATGTCTGATTTTAGTCATTTCTGTGTTTCTGTTCTGAATGGATGATGACCATTGTTGGTCGGTTGGAAGCTGTGAGATTAGGAAAAGGGTTTTGGTGTAATGGATCGCAACTGTAGATTGTTTAGGCCTCTGTTTGGAGCTTTTCTCTTTCTTGGTATCATCTGGTTTTCTTTCATTGGAGTGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACATGCAGTGGAAGCTGATTGGAAGAGAGAAGCATGTCTTTCATTGGCATTCTGATTTCTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGTACACAATTCTACTTGATCTAATTTACTAAAATTGCAGATGTGTTTTGCTTATTTTTCTTCTGCTTTTTGCAAGTATTGTCTTGAACCATTTTGGTCTTTTTTTTACTTCCTTTTAATTTTTCATCTCCTTAATTTGGTGGGTTTTACAATTTCTGTACAATTCCATAAATTTTGTCCCTAAAAAAAAGGCAAATTACGCGTTTGAAGGTGACCACCCAACTAAGAGTTCTATTTCCATTAGTAAATTTATGAACTGTTTCTCTATTGCTTTCATCTCTTCCAATTGTCGTTATTAGTTTCCTTGTGTACTACAAATTGTTAAGCCTGGAACAGAATTCAGCTTCAAACCCACCATTTGATCATTTTAAAATAATGTGTTGGTCTCTGCCTCTACCCACTTTGCTTGCTTTTCTTTTGCTTTCTCTATTTGGTTGTAACAATTTAGTAAAAGAGATGCAGGAAACTATTTCAATCGAGATGTGTTGAAGTTGATGATAGGCTCACTTTTTTTTCAAAAAAGAACAAAAGTTCTTTTTTATCACTCTTTCTCTTATTTTTATGAGCTATTAAAGGCATTGGGTCAAGAACTTGACCACTTTAGTTCATAAGCTTGACATTATAGACAGGTTACATAAAATTGTTTCTCTTTGCAACAAAACCATTGCAGACATGATTCTCTGTCTCTCTCTCTCTCTTTTTATGACATTGGCTAATGAATTTTATGCACAAAATGTGAATTCAGGAGAGTGGAGAATTCTAAACAACCACCAATTCGAGCCTAAGCAAATCAAGGAGATCGATCAGCTGCAGAAAAAGCTCAGAACTGAACAGTTAATTTTTTTTCACCTGTAAATGTCTTTTTATGCTCTCCATCAAGGATAGATCCTGCATTGAGACTTTTGTCCCCTAAAGCACTGACATGGCAACTGTTCTTAGTGGGTTTTTGGGGGTAAAAAGAGATTTTGGATAACTTTCCCAGAAAAATTTCAGTTGTTACTAGTCATCATTTATTTGATCTAAGATGCAAAGTGTTTGTTTTCTCGGAATTTGAAGATAATATATTGTTTCTTGTCGTTCACATGTATATGCATAAACTTGAA

mRNA sequence

ATGAATGTGGCGAAGAGTCCCAACCTTGCAGGGACCTCGTTTACTCACATGGTTCAGAGTCAATTTAGAATACTAGCTTCTCAGTTGAGAATGGCTTTGATTTTGCCTTCAGTATTTGATTTGAGCCAGAAACTATTGTTTAGGCCTCTGTTTGGAGCTTTTCTCTTTCTTGGTATCATCTGGTTTTCTTTCATTGGAGTGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACATGCAGTGGAAGCTGATTGGAAGAGAGAAGCATGTCTTTCATTGGCATTCTGATTTCTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTGGAGAATTCTAAACAACCACCAATTCGAGCCTAA

Coding sequence (CDS)

ATGAATGTGGCGAAGAGTCCCAACCTTGCAGGGACCTCGTTTACTCACATGGTTCAGAGTCAATTTAGAATACTAGCTTCTCAGTTGAGAATGGCTTTGATTTTGCCTTCAGTATTTGATTTGAGCCAGAAACTATTGTTTAGGCCTCTGTTTGGAGCTTTTCTCTTTCTTGGTATCATCTGGTTTTCTTTCATTGGAGTGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACATGCAGTGGAAGCTGATTGGAAGAGAGAAGCATGTCTTTCATTGGCATTCTGATTTCTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTGGAGAATTCTAAACAACCACCAATTCGAGCCTAA

Protein sequence

MNVAKSPNLAGTSFTHMVQSQFRILASQLRMALILPSVFDLSQKLLFRPLFGAFLFLGIIWFSFIGVIDNASPASRRATDMQWKLIGREKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQPPIRA

Homology

[Close]

BLAST of Spg039297 vs. NCBI nr
Match: KAG7033147.1 (CLAVATA3/ESR (CLE)-related protein 25 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 47  FRPLFGAFLFLGIIWFSFIGVIDNASPASRRATDMQWKLIGREKHVFHWHSDFYSVSKRR 106
           FR LFG FLFLGIIWFSFIG IDNASPASRRATDMQWK+IG EKHVFHWHSDFYSVSKRR
Sbjct: 8   FRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRR 67

Query: 107 VPNGPDPIHNRRVENSKQPPIRA 130
           VPNGPDPIHNRRVENSKQPP+RA
Sbjct: 68  VPNGPDPIHNRRVENSKQPPVRA 90

[Close]

BLAST of Spg039297 vs. NCBI nr
Match: KAG6578608.1 (CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164.9 bits (416), Expect = 4.8e-37
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 48  RPLFGAFLFLGIIWFSFIGVIDNASPASRRATDMQWKLIGREKHVFHWHSDFYSVSKRRV 107
           + LFGAFLFLG+IWFSFIGVIDNASPASRRATD+QWK+IGR KHVFHWHSDFYSVSKRRV
Sbjct: 9   KSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDFYSVSKRRV 68

Query: 108 PNGPDPIHNRRVENSKQPPIRA 130
           PNGPDPIHNRRV NSKQPPIRA
Sbjct: 69  PNGPDPIHNRRVGNSKQPPIRA 90

[Close]

BLAST of Spg039297 vs. NCBI nr
Match: KGN52425.1 (hypothetical protein Csa_008367 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 3.1e-36
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 48  RPLFGAFLFLGIIWFSFIGVIDNASPASRRATDMQWKLIGREKHVFHWHSDFYSVSKRRV 107
           + LFGAFLFLGIIWFSFIGVIDNAS ASRR TDMQWKLIGREKH FHWHSDFYSVSKRRV
Sbjct: 9   KSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKRRV 68

Query: 108 PNGPDPIHNRRVENSKQPPIR 129
           PNGPDPIHNRRVENS+QPPIR
Sbjct: 69  PNGPDPIHNRRVENSRQPPIR 89

[Close]

BLAST of Spg039297 vs. NCBI nr
Match: KAG7016157.1 (ylbH, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.5 bits (358), Expect = 2.5e-30
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 48  RPLFGAFLFLGIIWFSFIGVIDNASPASRRATDMQWKLIGREKHVFHWHSDFYSVSKRRV 107
           + LFGAFLFLG+IWFSFIGVIDNASPASRRATD+QWK+IGR KHVFHWHSDFYSVSKRRV
Sbjct: 309 KSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDFYSVSKRRV 368

Query: 108 PNGPDPIHN 117
           PNGPDPIHN
Sbjct: 369 PNGPDPIHN 377

[Close]

BLAST of Spg039297 vs. NCBI nr
Match: KAG6602472.1 (CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.4 bits (355), Expect = 5.6e-30
Identity = 74/129 (57.36%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 1   MNVAKSPNLAGTSFTHMVQSQFRILASQLRMALILPSVFDLSQKLLFRPLFGAFLFLGII 60
           MNV +SP  A TSF HM         +          + +L +K   R            
Sbjct: 14  MNVGESPKHARTSFAHMNAESIYSNQNSCNQTCEAACLKNLQRKWFLRASI--------- 73

Query: 61  WFSFIGVIDNASPASRRATDMQWKLIGREKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVE 120
              + G IDNASPASRRATDMQWK+IG EKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVE
Sbjct: 74  ---YFGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVE 130

Query: 121 NSKQPPIRA 130
           NSKQPP+RA
Sbjct: 134 NSKQPPVRA 130

[Close]

BLAST of Spg039297 vs. ExPASy Swiss-Prot
Match: Q8LFL4 (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.7e-10
Identity = 32/80 (40.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 48  RPLFGAFLFLGIIWFSFIGVIDNASPASRRATDMQ-WKLIGREKHVFHWHSDFYSVSKRR 107
           R L G    LG+I F  +G++ N++P+   + +++  +  G++ ++FH       VSKR+
Sbjct: 7   RALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKRK 66

Query: 108 VPNGPDPIHNRRVENSKQPP 127
           VPNGPDPIHNR+ E S++PP
Sbjct: 67  VPNGPDPIHNRKAETSRRPP 79

[Close]

BLAST of Spg039297 vs. ExPASy TrEMBL
Match: A0A0A0KS32 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633230 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.5e-36
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 48  RPLFGAFLFLGIIWFSFIGVIDNASPASRRATDMQWKLIGREKHVFHWHSDFYSVSKRRV 107
           + LFGAFLFLGIIWFSFIGVIDNAS ASRR TDMQWKLIGREKH FHWHSDFYSVSKRRV
Sbjct: 9   KSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKRRV 68

Query: 108 PNGPDPIHNRRVENSKQPPIR 129
           PNGPDPIHNRRVENS+QPPIR
Sbjct: 69  PNGPDPIHNRRVENSRQPPIR 89

[Close]

BLAST of Spg039297 vs. ExPASy TrEMBL
Match: A0A6J1HAQ4 (uncharacterized protein LOC111461653 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461653 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.3e-28
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 66  GVIDNASPASRRATDMQWKLIGREKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 125
           G IDNASPASRRATDMQWK+IG EKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP
Sbjct: 50  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 109

Query: 126 PIRA 130
           P+RA
Sbjct: 110 PVRA 113

[Close]

BLAST of Spg039297 vs. ExPASy TrEMBL
Match: A0A6J1HAS8 (uncharacterized protein LOC111461653 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461653 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.3e-28
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 66  GVIDNASPASRRATDMQWKLIGREKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 125
           G IDNASPASRRATDMQWK+IG EKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP
Sbjct: 50  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 109

Query: 126 PIRA 130
           P+RA
Sbjct: 110 PVRA 113

[Close]

BLAST of Spg039297 vs. ExPASy TrEMBL
Match: A0A6A1VIF3 (CLAVATA3/ESR (CLE)-related protein 25 OS=Morella rubra OX=262757 GN=CJ030_MR6G008522 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.8e-19
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 46  LFRPLFGAFLFLGIIWFSFIGVIDN----ASPASRRATDM--QWKLIGREKHVFHWHSDF 105
           LFR LFG  LF+G+IWF  +G++ N     S  + R+T++   WKLIGREKHV HW SD 
Sbjct: 7   LFRALFGTLLFVGVIWFLTVGILANHASKTSTITARSTEIFKYWKLIGREKHVVHWASDL 66

Query: 106 YSVSKRRVPNGPDPIHNRRVENSKQPPIRA 130
             VS+RRVPNGPDPIHNRR   +++PP R+
Sbjct: 67  NYVSRRRVPNGPDPIHNRRAAKTRRPPGRS 96

[Close]

BLAST of Spg039297 vs. ExPASy TrEMBL
Match: A0A6J5WYJ6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23893 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17
Identity = 49/94 (52.13%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 42  SQKLLFRPLFGAFLFLGIIWFSFIGVIDNASPASRRAT------DMQWKLIGREKHVFHW 101
           S + + R LFGA L LG+ WF   G++ N S      T         WKLIGREKH   W
Sbjct: 3   SDRKVLRTLFGALLLLGVFWFFLAGILVNRSTEKSTVTVSSTKMFKHWKLIGREKHAVVW 62

Query: 102 HSDFYSVSKRRVPNGPDPIHNRRVENSKQPPIRA 130
            S F  VSKRRVPNGPDPIHNRR   ++QPP RA
Sbjct: 63  DSSFIYVSKRRVPNGPDPIHNRRAVKTRQPPTRA 96

[Close]

BLAST of Spg039297 vs. TAIR 10
Match: AT3G28455.1 (CLAVATA3/ESR-RELATED 25 )

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-11
Identity = 32/80 (40.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 48  RPLFGAFLFLGIIWFSFIGVIDNASPASRRATDMQ-WKLIGREKHVFHWHSDFYSVSKRR 107
           R L G    LG+I F  +G++ N++P+   + +++  +  G++ ++FH       VSKR+
Sbjct: 7   RALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKRK 66

Query: 108 VPNGPDPIHNRRVENSKQPP 127
           VPNGPDPIHNR+ E S++PP
Sbjct: 67  VPNGPDPIHNRKAETSRRPP 79

[Close]

BLAST of Spg039297 vs. TAIR 10
Match: AT1G69970.2 (CLAVATA3/ESR-RELATED 26 )

HSP 1 Score: 48.5 bits (114), Expect = 4.6e-06
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 100 YSVSKRRVPNGPDPIHNRRVENSKQPPIRA 130
           Y  SKR+VP GPDPIHNRR  NS++PP RA
Sbjct: 73  YVASKRKVPRGPDPIHNRRAGNSRRPPGRA 102

The following BLAST results are available for this feature:

BLAST of Spg039297 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033147.1	1.3e-37	92.77	CLAVATA3/ESR (CLE)-related protein 25 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6578608.1	4.8e-37	91.46	CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. so...	[more]
KGN52425.1	3.1e-36	92.59	hypothetical protein Csa_008367 [Cucumis sativus]	[more]
KAG7016157.1	2.5e-30	91.30	ylbH, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6602472.1	5.6e-30	57.36	CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Spg039297 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFL4	6.7e-10	40.00	CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 P...	[more]

BLAST of Spg039297 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS32	1.5e-36	92.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633230 PE=4 SV=1	[more]
A0A6J1HAQ4	3.3e-28	93.75	uncharacterized protein LOC111461653 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HAS8	3.3e-28	93.75	uncharacterized protein LOC111461653 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6A1VIF3	4.8e-19	55.56	CLAVATA3/ESR (CLE)-related protein 25 OS=Morella rubra OX=262757 GN=CJ030_MR6G00...	[more]
A0A6J5WYJ6	2.6e-17	52.13	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23893 PE=4 S...	[more]

BLAST of Spg039297 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G28455.1	4.8e-11	40.00	CLAVATA3/ESR-RELATED 25	[more]
AT1G69970.2	4.6e-06	70.00	CLAVATA3/ESR-RELATED 26	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..129
None	No IPR available	PANTHER	PTHR34277:SF18	CLAVATA3/ESR (CLE)-RELATED PROTEIN 25	coord: 47..129
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 47..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg039297.1	Spg039297.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0016021	integral component of membrane