Spg037976 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037976
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPhosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1
Locationscaffold12: 42670575 .. 42670868 (-)
RNA-Seq ExpressionSpg037976
SyntenySpg037976
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCACCATTTTGTTAGCTGGTCCACAGCTGATGGAGGCAGCCAGGGTTATGAAAGGAGAGAAATGGATGGAGGACAAGGAAGATAATAGGCCTTTTGTGTTGCCTATTATTCAAGTCCTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAACCCGTGCACCAACATTCCTGGCCAAAGCAACGGTCGATGCACCCTCCAGACGATGAATGTTGCAGGTGGTCGTTTCGTTCACGCGCCGCCTGCTATCCCCGAGTCGGCGCTCGTTGCCTCGGCTGCTCAAAGCTCTTGA

mRNA sequence

ATGTTCACCATTTTGTTAGCTGGTCCACAGCTGATGGAGGCAGCCAGGGTTATGAAAGGAGAGAAATGGATGGAGGACAAGGAAGATAATAGGCCTTTTGTGTTGCCTATTATTCAAGTCCTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAACCCGTGCACCAACATTCCTGGCCAAAGCAACGGTCGATGCACCCTCCAGACGATGAATGTTGCAGGTGGTCGTTTCGTTCACGCGCCGCCTGCTATCCCCGAGTCGGCGCTCGTTGCCTCGGCTGCTCAAAGCTCTTGA

Coding sequence (CDS)

ATGTTCACCATTTTGTTAGCTGGTCCACAGCTGATGGAGGCAGCCAGGGTTATGAAAGGAGAGAAATGGATGGAGGACAAGGAAGATAATAGGCCTTTTGTGTTGCCTATTATTCAAGTCCTGCAGCGTGCCCCGGTGCCACCGTCCGGTCGCAACCCGTGCACCAACATTCCTGGCCAAAGCAACGGTCGATGCACCCTCCAGACGATGAATGTTGCAGGTGGTCGTTTCGTTCACGCGCCGCCTGCTATCCCCGAGTCGGCGCTCGTTGCCTCGGCTGCTCAAAGCTCTTGA

Protein sequence

MFTILLAGPQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSGRNPCTNIPGQSNGRCTLQTMNVAGGRFVHAPPAIPESALVASAAQSS
Homology
BLAST of Spg037976 vs. NCBI nr
Match: KAG6606390.1 (hypothetical protein SDJN03_03707, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 1.4e-28
Identity = 77/99 (77.78%), Postives = 82/99 (82.83%), Query Frame = 0

Query: 1  MFTILLAGPQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSGRNPCTNIPGQ 60
          MFTILL  P  MEAARVM GEKWM+ K+D   FVLP IQVLQRAPVPPSGRNPC+ IPGQ
Sbjct: 1  MFTILLPNP--MEAARVMSGEKWMKAKQD-IAFVLP-IQVLQRAPVPPSGRNPCSTIPGQ 60

Query: 61 SNGRCTLQTMNVAGG--RFVHAPPAIPESALVASAAQSS 98
          SNGRCTLQTMNVAGG  RFV APPAI + A +ASAAQSS
Sbjct: 61 SNGRCTLQTMNVAGGPARFVQAPPAIHDPAPIASAAQSS 95

BLAST of Spg037976 vs. NCBI nr
Match: XP_022995941.1 (uncharacterized protein LOC111491306 [Cucurbita maxima])

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-28
Identity = 76/99 (76.77%), Postives = 82/99 (82.83%), Query Frame = 0

Query: 1   MFTILLAGPQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSGRNPCTNIPGQ 60
           +FTILL  P  MEAARVM GEKWM+ K+D   FVLP IQVLQRAPVPPSGRNPC+ IPGQ
Sbjct: 15  LFTILLPNP--MEAARVMSGEKWMKAKQD-MAFVLP-IQVLQRAPVPPSGRNPCSTIPGQ 74

Query: 61  SNGRCTLQTMNVAG--GRFVHAPPAIPESALVASAAQSS 98
           SNGRCTLQTMNVAG  GRFV APPAI + A +ASAAQSS
Sbjct: 75  SNGRCTLQTMNVAGGPGRFVQAPPAIHDPAPIASAAQSS 109

BLAST of Spg037976 vs. NCBI nr
Match: XP_022931191.1 (uncharacterized protein LOC111437447 [Cucurbita moschata])

HSP 1 Score: 132.1 bits (331), Expect = 2.6e-27
Identity = 75/99 (75.76%), Postives = 80/99 (80.81%), Query Frame = 0

Query: 1   MFTILLAGPQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSGRNPCTNIPGQ 60
           M TILL  P  MEAARVM G KWM+ K+D   FVLP IQVLQRAPVPPSGRNPC+ IPGQ
Sbjct: 15  MLTILLPNP--MEAARVMSGHKWMKAKQD-IAFVLP-IQVLQRAPVPPSGRNPCSTIPGQ 74

Query: 61  SNGRCTLQTMNVAG--GRFVHAPPAIPESALVASAAQSS 98
           SNGRCTLQTMNVAG  GRFV APPAI + A +ASAAQSS
Sbjct: 75  SNGRCTLQTMNVAGGPGRFVQAPPAIHDPAPIASAAQSS 109

BLAST of Spg037976 vs. NCBI nr
Match: TXG63783.1 (hypothetical protein EZV62_010777 [Acer yangbiense])

HSP 1 Score: 80.9 bits (198), Expect = 6.8e-12
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 0

Query: 3   TILLAG--PQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSGRNPCTNIPGQ 62
           T+L+A      + A R ++G++W  +KEDNR       Q LQ+ P+PPSGRNPC+NIPGQ
Sbjct: 20  TLLMASHDQHFVAATRPLEGDQW-TNKEDNR----LAFQSLQQGPLPPSGRNPCSNIPGQ 79

Query: 63  SNGRCTLQTMNVAGGRFVHAPPAIPESAL---VASAAQS 97
            +G CTL   N AGGR    PPA P   +   VAS A+S
Sbjct: 80  GSGVCTLNGKNFAGGRVALEPPAFPSFVMDIGVASIARS 113

BLAST of Spg037976 vs. NCBI nr
Match: XP_002319090.1 (uncharacterized protein LOC7487687 [Populus trichocarpa] >PNT06657.1 hypothetical protein POPTR_013G043600 [Populus trichocarpa])

HSP 1 Score: 77.8 bits (190), Expect = 5.7e-11
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 0

Query: 3   TILLAG-PQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSGRNPCTNIPGQS 62
           TI+L    Q + AAR ++GE+W E    N       IQ LQR PVPPSG +PCT+IPG+ 
Sbjct: 17  TIVLGSCSQQVLAARPLEGERWSEKIVGN-------IQSLQRGPVPPSGGSPCTHIPGRG 76

Query: 63  NGRCTLQTMNVAGGRFVHAPPAIPESALVASAAQSS 98
           +G+C+L  MN AG     APPA P++ +   AA S+
Sbjct: 77  SGKCSLGEMNFAGHTVALAPPAFPDAIMNFGAAAST 105

BLAST of Spg037976 vs. ExPASy TrEMBL
Match: A0A0A0LCX8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G391390 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.0e-29
Identity = 76/99 (76.77%), Postives = 81/99 (81.82%), Query Frame = 0

Query: 2   FTILLAGPQLMEAARVMKGEKWM-EDKEDNRPFVLPIIQVLQRAPVPPSGRNPCTNIPGQ 61
           F IL+A  Q+M  ARVMK EKWM E+K D+  FVLPIIQVLQRAPVPPSGRNPCT IPGQ
Sbjct: 12  FIILVASSQVMVGARVMKVEKWMKEEKNDHSVFVLPIIQVLQRAPVPPSGRNPCTGIPGQ 71

Query: 62  SNGRCTLQTMNVAGGRFVHA-PPAIPESAL-VASAAQSS 98
           SNGRCTLQTMNVAG  FVHA PP IP+SAL V S AQSS
Sbjct: 72  SNGRCTLQTMNVAGHHFVHARPPPIPDSALNVDSTAQSS 110

BLAST of Spg037976 vs. ExPASy TrEMBL
Match: A0A6J1K3A7 (uncharacterized protein LOC111491306 OS=Cucurbita maxima OX=3661 GN=LOC111491306 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.6e-29
Identity = 76/99 (76.77%), Postives = 82/99 (82.83%), Query Frame = 0

Query: 1   MFTILLAGPQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSGRNPCTNIPGQ 60
           +FTILL  P  MEAARVM GEKWM+ K+D   FVLP IQVLQRAPVPPSGRNPC+ IPGQ
Sbjct: 15  LFTILLPNP--MEAARVMSGEKWMKAKQD-MAFVLP-IQVLQRAPVPPSGRNPCSTIPGQ 74

Query: 61  SNGRCTLQTMNVAG--GRFVHAPPAIPESALVASAAQSS 98
           SNGRCTLQTMNVAG  GRFV APPAI + A +ASAAQSS
Sbjct: 75  SNGRCTLQTMNVAGGPGRFVQAPPAIHDPAPIASAAQSS 109

BLAST of Spg037976 vs. ExPASy TrEMBL
Match: A0A6J1ET04 (uncharacterized protein LOC111437447 OS=Cucurbita moschata OX=3662 GN=LOC111437447 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 75/99 (75.76%), Postives = 80/99 (80.81%), Query Frame = 0

Query: 1   MFTILLAGPQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSGRNPCTNIPGQ 60
           M TILL  P  MEAARVM G KWM+ K+D   FVLP IQVLQRAPVPPSGRNPC+ IPGQ
Sbjct: 15  MLTILLPNP--MEAARVMSGHKWMKAKQD-IAFVLP-IQVLQRAPVPPSGRNPCSTIPGQ 74

Query: 61  SNGRCTLQTMNVAG--GRFVHAPPAIPESALVASAAQSS 98
           SNGRCTLQTMNVAG  GRFV APPAI + A +ASAAQSS
Sbjct: 75  SNGRCTLQTMNVAGGPGRFVQAPPAIHDPAPIASAAQSS 109

BLAST of Spg037976 vs. ExPASy TrEMBL
Match: A0A5C7I2P2 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010777 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 0

Query: 3   TILLAG--PQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSGRNPCTNIPGQ 62
           T+L+A      + A R ++G++W  +KEDNR       Q LQ+ P+PPSGRNPC+NIPGQ
Sbjct: 20  TLLMASHDQHFVAATRPLEGDQW-TNKEDNR----LAFQSLQQGPLPPSGRNPCSNIPGQ 79

Query: 63  SNGRCTLQTMNVAGGRFVHAPPAIPESAL---VASAAQS 97
            +G CTL   N AGGR    PPA P   +   VAS A+S
Sbjct: 80  GSGVCTLNGKNFAGGRVALEPPAFPSFVMDIGVASIARS 113

BLAST of Spg037976 vs. ExPASy TrEMBL
Match: B9I5L3 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G043600 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 0

Query: 3   TILLAG-PQLMEAARVMKGEKWMEDKEDNRPFVLPIIQVLQRAPVPPSGRNPCTNIPGQS 62
           TI+L    Q + AAR ++GE+W E    N       IQ LQR PVPPSG +PCT+IPG+ 
Sbjct: 17  TIVLGSCSQQVLAARPLEGERWSEKIVGN-------IQSLQRGPVPPSGGSPCTHIPGRG 76

Query: 63  NGRCTLQTMNVAGGRFVHAPPAIPESALVASAAQSS 98
           +G+C+L  MN AG     APPA P++ +   AA S+
Sbjct: 77  SGKCSLGEMNFAGHTVALAPPAFPDAIMNFGAAAST 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6606390.11.4e-2877.78hypothetical protein SDJN03_03707, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022995941.11.8e-2876.77uncharacterized protein LOC111491306 [Cucurbita maxima][more]
XP_022931191.12.6e-2775.76uncharacterized protein LOC111437447 [Cucurbita moschata][more]
TXG63783.16.8e-1247.47hypothetical protein EZV62_010777 [Acer yangbiense][more]
XP_002319090.15.7e-1145.83uncharacterized protein LOC7487687 [Populus trichocarpa] >PNT06657.1 hypothetica... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LCX81.0e-2976.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G391390 PE=4 SV=1[more]
A0A6J1K3A78.6e-2976.77uncharacterized protein LOC111491306 OS=Cucurbita maxima OX=3661 GN=LOC111491306... [more]
A0A6J1ET041.2e-2775.76uncharacterized protein LOC111437447 OS=Cucurbita moschata OX=3662 GN=LOC1114374... [more]
A0A5C7I2P23.3e-1247.47Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010777 PE=4 SV=1[more]
B9I5L32.8e-1145.83Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G043600 PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 3..96
NoneNo IPR availablePANTHERPTHR33592:SF5TRANSMEMBRANE PROTEINcoord: 3..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037976.1Spg037976.1mRNA