Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGATCCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTTGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAAAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGACAAGGAGGTCAAAACCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAGCCCATAACTTTGGCAGAATACTTCCCAAGATGCTTTCTCGATGATAGTCAAGGAGAGGCATTCGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAACGGTGACAGGTCCAGGAGATTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAGGCTAAAAGTGTCCTTATTGATGCGTTGATGGAGTCTAATGGTGCAAACATCCCAACCTCTAAGGCACGCACATGTGCTTCGTGTTGCATGTCTATAGGATTTTCTGATGAAGATTTGCTGCTAGGGTCGAAGCCTCACAATAGACCTTTATTTGTTTCAGGATACATCCGAGAACAGCGGGTTAGTCCGATCCTCATCGATGATGGATCAGCTGTCAACATAATGCCTAAGTCAACCATGAAGCAATTAGGCATCTCAATGGAAGAACTATCAAATAGTAAATTGGTGATTCAAGGTTTCAATCAAGGCGGACAACGAGCGATTGGCATGATACGCCTTGATCTCATCATTGGAGACTTAAAAGCTGATACTTTGTTCCATGTAATAGATTCTAGACCACCTATAAGTTGTTGTTAGGTCGTCCTTGGATCCATGGTAATGGAGTCATAACCTCTACATTGCACCAGTGCTTTAAATTTTATCAAGATGGCATTAAGAAAGTTGAGGCTGACACTAACCCATTCTCAGAAGCTGAATCCCATTTCCCTGATGCAAAATTTTATATGAAGAGCGACAACACAGGGGAAACTATACCTACAGAAATCCCCTTGATAAAAAAGAATGATAAACTCGACTTAGAGCCACAAGCAGATGCAAGGAAGGAAACTGTTGAGGATGTGAAGGCATCTAACCTAAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAAAGGATGAGAAGTGTTCACTTGTCCTACGATACGTCCCTTTATCTCGGCATAAAAAGGGTAAATCACCTTTCACTAAATGTCCAAAAAGCATAAAGGTCGGTGACGTTGAAATTCTGAAGGAAAGTTTCACTACGCCTCTTACAAAGATCACAAAGCAAGAGGTTAAGAAACCTGAAAATGACCAGATAAAAATGACTTTGCCTGACATACGGTCTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCGAAAGCGGGTTATGACTTCACAACTCATACTGAGTTTAAAAGTCTAAGGGTTTTTGACGAAAGACCTGAGCTCTCTGCAACAAAGAAGAAGCTTCTAAAAGAAGGTCATGGTCTGCCTACAACGAGAAAAGGACTTGGATATAAGTCGCCTGAGCCGGTTCGTATAACAAGAAGAGGGAAGGCAAAAGTGGCAGACATAAATCATATAACAGTAAAGGAGGTTGATGACCCAAAAGAAAAAGAGAGTGTCAACCAACGAACTTCTGTTTTTAGGCTCATCAGGCAACCAGTTGCTCATGCTTCAGTCTTTCAGAGGTTAATTGTGAATGAAACAGAAGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTTAGTTTTTCGAAGGTTAAGTATGCTCATTGGGGAAGAAGAAAGTACACTTTCAACTCCGGATGTCACCGACCTTCAGTTTTTCGAAGGTTAA
mRNA sequence
ATGAAGGGATCCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTTGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAAAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGACAAGGAGGTCAAAACCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAGCCCATAACTTTGGCAGAATACTTCCCAAGATGCTTTCTCGATGATAGTCAAGGAGAGGCATTCGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAACGGTGACAGGTCCAGGAGATTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAGGCTAAAAGTGTCCTTATTGATGCGTTGATGGAGTCTAATGAGCCACAAGCAGATGCAAGGAAGGAAACTGTTGAGGATGTGAAGGCATCTAACCTAAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAAAGGATGAGAAGTGTTCACTTGTCCTACGATACGTCCCTTTATCTCGGCATAAAAAGGGTAAATCACCTTTCACTAAATGTCCAAAAAGCATAAAGAAGAAGCTTCTAAAAGAAGGTCATGGTCTGCCTACAACGAGAAAAGGACTTGGATATAAGTCGCCTGAGCCGGTTCGTATAACAAGAAGAGGGAAGGCAAAAGTGGCAGACATAAATCATATAACAGTAAAGGAGGTTGATGACCCAAAAGAAAAAGAGAGTGTCAACCAACGAACTTCTGTTTTTAGGCTCATCAGGCAACCAGTTGCTCATGCTTCAGTCTTTCAGAGGTTAATTGTGAATGAAACAGAAGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTTAGTTTTTCGAAGGTTAAGTATGCTCATTGGGGAAGAAGAAAGTACACTTTCAACTCCGGATGTCACCGACCTTCAGTTTTTCGAAGGTTAA
Coding sequence (CDS)
ATGAAGGGATCCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTTGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAAAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGACAAGGAGGTCAAAACCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAGCCCATAACTTTGGCAGAATACTTCCCAAGATGCTTTCTCGATGATAGTCAAGGAGAGGCATTCGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAACGGTGACAGGTCCAGGAGATTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAGGCTAAAAGTGTCCTTATTGATGCGTTGATGGAGTCTAATGAGCCACAAGCAGATGCAAGGAAGGAAACTGTTGAGGATGTGAAGGCATCTAACCTAAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAAAGGATGAGAAGTGTTCACTTGTCCTACGATACGTCCCTTTATCTCGGCATAAAAAGGGTAAATCACCTTTCACTAAATGTCCAAAAAGCATAAAGAAGAAGCTTCTAAAAGAAGGTCATGGTCTGCCTACAACGAGAAAAGGACTTGGATATAAGTCGCCTGAGCCGGTTCGTATAACAAGAAGAGGGAAGGCAAAAGTGGCAGACATAAATCATATAACAGTAAAGGAGGTTGATGACCCAAAAGAAAAAGAGAGTGTCAACCAACGAACTTCTGTTTTTAGGCTCATCAGGCAACCAGTTGCTCATGCTTCAGTCTTTCAGAGGTTAATTGTGAATGAAACAGAAGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTTAGTTTTTCGAAGGTTAAGTATGCTCATTGGGGAAGAAGAAAGTACACTTTCAACTCCGGATGTCACCGACCTTCAGTTTTTCGAAGGTTAA
Protein sequence
MKGSQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGPGDLSSFSIKDLLSLPQEAKSVLIDALMESNEPQADARKETVEDVKASNLKKGETSTSLVKPKVVKDEKCSLVLRYVPLSRHKKGKSPFTKCPKSIKKKLLKEGHGLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVKEVDDPKEKESVNQRTSVFRLIRQPVAHASVFQRLIVNETEEESAQPTNSSTRSLVFRRLSMLIGEEESTLSTPDVTDLQFFEG
Homology
BLAST of Spg034723 vs. NCBI nr
Match:
TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 176.0 bits (445), Expect = 5.5e-40
Identity = 164/562 (29.18%), Postives = 220/562 (39.15%), Query Frame = 0
Query: 4 SQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPV 63
SQEK IE+++E WT+V RKK+K + +KE R +R+ ++ K+Q+ K KKKTR+ K +
Sbjct: 363 SQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLKLM 422
Query: 64 VEESEDFFCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGP 123
+E +DF + ITLA++FP FL D Q E V CH ++ E++ +P S E
Sbjct: 423 HKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVS 482
Query: 124 GDLSSFSIKDLLSLPQEAKSVLIDALMES------------------------------- 183
DLS F++ DLLSLPQE K++LI+AL+ S
Sbjct: 483 KDLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLG 542
Query: 184 ----NEP----------------------------------------------------- 243
N P
Sbjct: 543 SKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQ 602
Query: 244 ------------QAD--------------------------------------------- 303
+AD
Sbjct: 603 GSQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSL 662
Query: 304 ARKETVEDVKASNLKKGETSTSLVKPKVVKDEKCS--LVLRYVPLSRHKKGKSPFTKCPK 342
A KE + + +K E STS K ++ DEK S +LRYVPLSR KKG+SPF + P+
Sbjct: 663 ASKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQ 722
BLAST of Spg034723 vs. NCBI nr
Match:
KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 160.6 bits (405), Expect = 2.4e-35
Identity = 146/481 (30.35%), Postives = 211/481 (43.87%), Query Frame = 0
Query: 4 SQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPV 63
SQEK IE+++EGWT+V RKK+K + +KESRL+ + ++ K+Q+ K KKKTR+ K V
Sbjct: 467 SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLV 526
Query: 64 VEESEDFFCPPQPITLAEYFPRCFLDDSQGE----------------AFE-TVTCHIVDV 123
E+ +DF + +TLA++FP FL D Q E +E T C +D
Sbjct: 527 HEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDF 586
Query: 124 VEDDDVPASS---------------------SETVTGPGDLSSFSIKDLLSLPQEAKS-- 183
++D + S + + + +++ L L +E +
Sbjct: 587 SDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSK 646
Query: 184 VLIDALMESNEPQADAR--------------------------------KETVEDVKASN 243
++I + ++ DA+ +E+ + +
Sbjct: 647 LVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFH 706
Query: 244 LKKGETSTSLVKPKVVKDEKCS--LVLRYVPLSRHKKGKSPFTKCPKSIK---------- 303
K E STS K +V DEK S +LRYVPLSR KKG+SPF + P+ +K
Sbjct: 707 SGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKES 766
Query: 304 ------------------------------------------------------------ 334
Sbjct: 767 FTTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHEQ 826
BLAST of Spg034723 vs. NCBI nr
Match:
XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])
HSP 1 Score: 154.5 bits (389), Expect = 1.7e-33
Identity = 162/613 (26.43%), Postives = 216/613 (35.24%), Query Frame = 0
Query: 11 IEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPVVEESEDF 70
IE+++EGW +V RKK++ ++ESR +++ ++ K+Q+ K KKKT + K V E +F
Sbjct: 569 IEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVHNEDMNF 628
Query: 71 FCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGPGDLSSFS 130
P + +TLA++ P+ FL D Q E E V CH ++ E++ +P S E DLS F+
Sbjct: 629 SRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVSKDLSRFN 688
Query: 131 IKDLLSLPQEAKSVLIDALMESNEPQADARKETVE------------------------- 190
++DLLSLPQE K++LIDAL+ S + T E
Sbjct: 689 VEDLLSLPQETKTILIDALLNSRASSSSTPTMTYESGSYCMSIDFSDEDLLLGSKLHNRP 748
Query: 191 ------------------------------------------------------------ 250
Sbjct: 749 LYVSGYVREQRVDRILIDNGSAVNIMPKSTMWQLGILMDELSNSKLVIQGFNQGSQRAIG 808
Query: 251 ---------DVKAS---------------------------------------------- 310
D+KAS
Sbjct: 809 MIRLELIIGDLKASALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDGVKKVE 868
Query: 311 -----------------------------------------------------------N 346
N
Sbjct: 869 ADSNPFSEAESHFADAKFYSKNNNILEVLPAETPLTKGEDNSQLKSLATTEPHESARTFN 928
BLAST of Spg034723 vs. NCBI nr
Match:
KAA0032751.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ98782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 153.7 bits (387), Expect = 2.9e-33
Identity = 141/457 (30.85%), Postives = 187/457 (40.92%), Query Frame = 0
Query: 4 SQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPV 63
SQEK IE+++EGWT+V RKK+K + +KESR +R+ + +Q K KKKTR+ K V
Sbjct: 73 SQEKERLIEEDDEGWTVVTRRKKRKSTQIQKESRFYRNYTRGNNTQNNKKKKKTRKLKLV 132
Query: 64 VEESEDFFCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGP 123
EE +DF +TLA++FP FL D Q E V C ++ +++ +P E
Sbjct: 133 HEEDKDFPRTQCLVTLADFFPTRFLCDHQDENPGVVACRAINATKEESIPLRLLEEEVSK 192
Query: 124 GDLSSFSIKDLLSLPQEAKSVLIDA----------------------------------- 183
DLS F++ LLSLPQE K++LI+A
Sbjct: 193 -DLSRFNVDGLLSLPQETKTILINASLNLAASSSSAPTATYENSRTTYKLLLSRPWIHGN 252
Query: 184 -----------------------------------------LMESNEPQAD--------- 243
L + P+A
Sbjct: 253 GVVTSTLHQCFKFYQDVVKKVEADSNPFSEAESHFADAKFYLKNDSSPEAVYVEVPLVKR 312
Query: 244 ---------ARKETVEDVKASNLKKGETSTSLVKPKVVKDEKCS--LVLRYVPLSRHKKG 297
A +E + + + +K E STS K ++ +K S +LRYV LSR KKG
Sbjct: 313 EDNLQLKSLASEEPHKSTRTFHSEKSEASTSTTKSVILMGKKTSNPPILRYVCLSRCKKG 372
BLAST of Spg034723 vs. NCBI nr
Match:
XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])
HSP 1 Score: 153.3 bits (386), Expect = 3.8e-33
Identity = 161/613 (26.26%), Postives = 216/613 (35.24%), Query Frame = 0
Query: 11 IEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPVVEESEDF 70
IE+++EGW +V RKK++ ++ESR +++ ++ K+Q+ K KKKT + K V E +F
Sbjct: 569 IEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVHNEDMNF 628
Query: 71 FCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGPGDLSSFS 130
P + +TLA++ P+ FL D Q E E V CH ++ E++ +P S E DLS F+
Sbjct: 629 SRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVSKDLSRFN 688
Query: 131 IKDLLSLPQEAKSVLIDALMESNEPQADARKETVE------------------------- 190
++DLLSLPQE K++LIDAL+ S + T E
Sbjct: 689 VEDLLSLPQETKTILIDALLNSRASSSSTPTMTYESGSYCMSIDFSDEDLLLGSKLHNRP 748
Query: 191 ------------------------------------------------------------ 250
Sbjct: 749 LYVSGYVREQRVDRILIDNGSAVNIMPKSTMWQLGILMDELSNSKLVIQGFNQGSQRAIG 808
Query: 251 ---------DVKAS---------------------------------------------- 310
D+KAS
Sbjct: 809 MIRLELIIGDLKASALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDGVKKVE 868
Query: 311 -----------------------------------------------------------N 346
N
Sbjct: 869 ADSNPFSEAESHFADAKFYSKNNNILEVLPAETPLTKGEDNSQLKSLATTEPHESARTFN 928
BLAST of Spg034723 vs. ExPASy TrEMBL
Match:
A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)
HSP 1 Score: 176.0 bits (445), Expect = 2.7e-40
Identity = 164/562 (29.18%), Postives = 220/562 (39.15%), Query Frame = 0
Query: 4 SQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPV 63
SQEK IE+++E WT+V RKK+K + +KE R +R+ ++ K+Q+ K KKKTR+ K +
Sbjct: 363 SQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLKLM 422
Query: 64 VEESEDFFCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGP 123
+E +DF + ITLA++FP FL D Q E V CH ++ E++ +P S E
Sbjct: 423 HKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVS 482
Query: 124 GDLSSFSIKDLLSLPQEAKSVLIDALMES------------------------------- 183
DLS F++ DLLSLPQE K++LI+AL+ S
Sbjct: 483 KDLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLG 542
Query: 184 ----NEP----------------------------------------------------- 243
N P
Sbjct: 543 SKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQ 602
Query: 244 ------------QAD--------------------------------------------- 303
+AD
Sbjct: 603 GSQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSL 662
Query: 304 ARKETVEDVKASNLKKGETSTSLVKPKVVKDEKCS--LVLRYVPLSRHKKGKSPFTKCPK 342
A KE + + +K E STS K ++ DEK S +LRYVPLSR KKG+SPF + P+
Sbjct: 663 ASKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQ 722
BLAST of Spg034723 vs. ExPASy TrEMBL
Match:
A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 1.2e-35
Identity = 146/481 (30.35%), Postives = 211/481 (43.87%), Query Frame = 0
Query: 4 SQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPV 63
SQEK IE+++EGWT+V RKK+K + +KESRL+ + ++ K+Q+ K KKKTR+ K V
Sbjct: 467 SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLV 526
Query: 64 VEESEDFFCPPQPITLAEYFPRCFLDDSQGE----------------AFE-TVTCHIVDV 123
E+ +DF + +TLA++FP FL D Q E +E T C +D
Sbjct: 527 HEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDF 586
Query: 124 VEDDDVPASS---------------------SETVTGPGDLSSFSIKDLLSLPQEAKS-- 183
++D + S + + + +++ L L +E +
Sbjct: 587 SDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSK 646
Query: 184 VLIDALMESNEPQADAR--------------------------------KETVEDVKASN 243
++I + ++ DA+ +E+ + +
Sbjct: 647 LVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFH 706
Query: 244 LKKGETSTSLVKPKVVKDEKCS--LVLRYVPLSRHKKGKSPFTKCPKSIK---------- 303
K E STS K +V DEK S +LRYVPLSR KKG+SPF + P+ +K
Sbjct: 707 SGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKES 766
Query: 304 ------------------------------------------------------------ 334
Sbjct: 767 FTTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHEQ 826
BLAST of Spg034723 vs. ExPASy TrEMBL
Match:
A0A5D3BG93 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00910 PE=4 SV=1)
HSP 1 Score: 153.7 bits (387), Expect = 1.4e-33
Identity = 141/457 (30.85%), Postives = 187/457 (40.92%), Query Frame = 0
Query: 4 SQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPV 63
SQEK IE+++EGWT+V RKK+K + +KESR +R+ + +Q K KKKTR+ K V
Sbjct: 73 SQEKERLIEEDDEGWTVVTRRKKRKSTQIQKESRFYRNYTRGNNTQNNKKKKKTRKLKLV 132
Query: 64 VEESEDFFCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGP 123
EE +DF +TLA++FP FL D Q E V C ++ +++ +P E
Sbjct: 133 HEEDKDFPRTQCLVTLADFFPTRFLCDHQDENPGVVACRAINATKEESIPLRLLEEEVSK 192
Query: 124 GDLSSFSIKDLLSLPQEAKSVLIDA----------------------------------- 183
DLS F++ LLSLPQE K++LI+A
Sbjct: 193 -DLSRFNVDGLLSLPQETKTILINASLNLAASSSSAPTATYENSRTTYKLLLSRPWIHGN 252
Query: 184 -----------------------------------------LMESNEPQAD--------- 243
L + P+A
Sbjct: 253 GVVTSTLHQCFKFYQDVVKKVEADSNPFSEAESHFADAKFYLKNDSSPEAVYVEVPLVKR 312
Query: 244 ---------ARKETVEDVKASNLKKGETSTSLVKPKVVKDEKCS--LVLRYVPLSRHKKG 297
A +E + + + +K E STS K ++ +K S +LRYV LSR KKG
Sbjct: 313 EDNLQLKSLASEEPHKSTRTFHSEKSEASTSTTKSVILMGKKTSNPPILRYVCLSRCKKG 372
BLAST of Spg034723 vs. ExPASy TrEMBL
Match:
A0A5A7TPR5 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00040 PE=4 SV=1)
HSP 1 Score: 148.7 bits (374), Expect = 4.6e-32
Identity = 91/202 (45.05%), Postives = 119/202 (58.91%), Query Frame = 0
Query: 159 ARKETVEDVKASNLKKGETSTSLVKPKVVKDEKCS--LVLRYVPLSRHKKGKSPFTKCPK 218
A KE + + + +KGE STS K ++ DEK S L+LRYVPLSR +KG+SPF K P+
Sbjct: 56 ASKEPHKSIGTFHSRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQ 115
Query: 219 SIK-------------KKLLKEGHGLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVK 278
+K KKLL+EGH +P +RKG GYKSPEP+ I R+ K KV D NHITV
Sbjct: 116 GLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVG 175
Query: 279 EVDDPKEKESVNQRTSVFRLIRQPVAHASVFQRLIVNETEEESAQPTNSSTRSLVFRRLS 338
EVD +EKE +QR S F IR V +VF+RL V +TE + Q T+S + +RL+
Sbjct: 176 EVDSMEEKEGGSQRISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLT 235
Query: 339 MLIGEEESTLSTPDVTDLQFFE 346
M +E+ T T FE
Sbjct: 236 MTFKKEKCTCQALRATRPSAFE 257
BLAST of Spg034723 vs. ExPASy TrEMBL
Match:
A0A5D3BSG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00710 PE=4 SV=1)
HSP 1 Score: 146.7 bits (369), Expect = 1.7e-31
Identity = 158/599 (26.38%), Postives = 215/599 (35.89%), Query Frame = 0
Query: 4 SQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPV 63
SQEK IE+++EGWT+V RKK+K + +KE R +R+ +K K+Q+ K KKKTR+ K +
Sbjct: 116 SQEKERLIEEDDEGWTIVTRRKKRKSTLIQKEHRFYRNYRKGNKAQKNKKKKKTRKLKLM 175
Query: 64 VEESEDFFCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGP 123
EE +DF + +TLA++FP FL D Q E V CH ++ +E++++P S E
Sbjct: 176 HEEDKDFPQTQRLVTLADFFPTRFLGDHQDENPRVVECHAINAIEEENIPLRSLEEEGVS 235
Query: 124 GDLSSFSIKDLLSLPQEAKSVLIDALMESNEPQADARKETVE------------------ 183
DLS F++ DLLSLPQE K +LI+AL+ S + A T E
Sbjct: 236 KDLSRFNVNDLLSLPQETKIILINALLNSTASSSSAPTATYESTPYCMSIDFSYEDLLLG 295
Query: 184 ------------------------------------------------------------ 243
Sbjct: 296 SKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTMRQLGILMEELSNSKLIIQGFNQ 355
Query: 244 ----------------DVKASNL------------------------------------- 303
D+K S L
Sbjct: 356 GSQRVIGMICLELIIGDLKTSALFHVIDSRITYKLLLGRSWIHGNGVVTSTLHQCFKFYQ 415
Query: 304 ---KKGETSTSL----------VKPKVVKDEKCSLVLRYVPL------------------ 346
KK E ++ K + D V VPL
Sbjct: 416 DGVKKVEADSNPFSEVESHFADAKFYLKNDSSSEAVSVEVPLLNREDNLQLKSLTSKEPQ 475
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYK05005.1 | 5.5e-40 | 29.18 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0061113.1 | 2.4e-35 | 30.35 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp... | [more] |
| XP_031735972.1 | 1.7e-33 | 26.43 | uncharacterized protein LOC116401693 [Cucumis sativus] | [more] |
| KAA0032751.1 | 2.9e-33 | 30.85 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ98782.1 ty3-gyp... | [more] |
| XP_031739134.1 | 3.8e-33 | 26.26 | uncharacterized protein LOC116402863 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3C0W6 | 2.7e-40 | 29.18 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3BY54 | 1.2e-35 | 30.35 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3BG93 | 1.4e-33 | 30.85 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7TPR5 | 4.6e-32 | 45.05 | RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3BSG5 | 1.7e-31 | 26.38 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
