Spg034723 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg034723
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationscaffold7: 46765721 .. 46767603 (-)
RNA-Seq ExpressionSpg034723
SyntenySpg034723
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGATCCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTTGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAAAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGACAAGGAGGTCAAAACCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAGCCCATAACTTTGGCAGAATACTTCCCAAGATGCTTTCTCGATGATAGTCAAGGAGAGGCATTCGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAACGGTGACAGGTCCAGGAGATTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAGGCTAAAAGTGTCCTTATTGATGCGTTGATGGAGTCTAATGGTGCAAACATCCCAACCTCTAAGGCACGCACATGTGCTTCGTGTTGCATGTCTATAGGATTTTCTGATGAAGATTTGCTGCTAGGGTCGAAGCCTCACAATAGACCTTTATTTGTTTCAGGATACATCCGAGAACAGCGGGTTAGTCCGATCCTCATCGATGATGGATCAGCTGTCAACATAATGCCTAAGTCAACCATGAAGCAATTAGGCATCTCAATGGAAGAACTATCAAATAGTAAATTGGTGATTCAAGGTTTCAATCAAGGCGGACAACGAGCGATTGGCATGATACGCCTTGATCTCATCATTGGAGACTTAAAAGCTGATACTTTGTTCCATGTAATAGATTCTAGACCACCTATAAGTTGTTGTTAGGTCGTCCTTGGATCCATGGTAATGGAGTCATAACCTCTACATTGCACCAGTGCTTTAAATTTTATCAAGATGGCATTAAGAAAGTTGAGGCTGACACTAACCCATTCTCAGAAGCTGAATCCCATTTCCCTGATGCAAAATTTTATATGAAGAGCGACAACACAGGGGAAACTATACCTACAGAAATCCCCTTGATAAAAAAGAATGATAAACTCGACTTAGAGCCACAAGCAGATGCAAGGAAGGAAACTGTTGAGGATGTGAAGGCATCTAACCTAAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAAAGGATGAGAAGTGTTCACTTGTCCTACGATACGTCCCTTTATCTCGGCATAAAAAGGGTAAATCACCTTTCACTAAATGTCCAAAAAGCATAAAGGTCGGTGACGTTGAAATTCTGAAGGAAAGTTTCACTACGCCTCTTACAAAGATCACAAAGCAAGAGGTTAAGAAACCTGAAAATGACCAGATAAAAATGACTTTGCCTGACATACGGTCTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCGAAAGCGGGTTATGACTTCACAACTCATACTGAGTTTAAAAGTCTAAGGGTTTTTGACGAAAGACCTGAGCTCTCTGCAACAAAGAAGAAGCTTCTAAAAGAAGGTCATGGTCTGCCTACAACGAGAAAAGGACTTGGATATAAGTCGCCTGAGCCGGTTCGTATAACAAGAAGAGGGAAGGCAAAAGTGGCAGACATAAATCATATAACAGTAAAGGAGGTTGATGACCCAAAAGAAAAAGAGAGTGTCAACCAACGAACTTCTGTTTTTAGGCTCATCAGGCAACCAGTTGCTCATGCTTCAGTCTTTCAGAGGTTAATTGTGAATGAAACAGAAGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTTAGTTTTTCGAAGGTTAAGTATGCTCATTGGGGAAGAAGAAAGTACACTTTCAACTCCGGATGTCACCGACCTTCAGTTTTTCGAAGGTTAA

mRNA sequence

ATGAAGGGATCCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTTGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAAAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGACAAGGAGGTCAAAACCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAGCCCATAACTTTGGCAGAATACTTCCCAAGATGCTTTCTCGATGATAGTCAAGGAGAGGCATTCGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAACGGTGACAGGTCCAGGAGATTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAGGCTAAAAGTGTCCTTATTGATGCGTTGATGGAGTCTAATGAGCCACAAGCAGATGCAAGGAAGGAAACTGTTGAGGATGTGAAGGCATCTAACCTAAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAAAGGATGAGAAGTGTTCACTTGTCCTACGATACGTCCCTTTATCTCGGCATAAAAAGGGTAAATCACCTTTCACTAAATGTCCAAAAAGCATAAAGAAGAAGCTTCTAAAAGAAGGTCATGGTCTGCCTACAACGAGAAAAGGACTTGGATATAAGTCGCCTGAGCCGGTTCGTATAACAAGAAGAGGGAAGGCAAAAGTGGCAGACATAAATCATATAACAGTAAAGGAGGTTGATGACCCAAAAGAAAAAGAGAGTGTCAACCAACGAACTTCTGTTTTTAGGCTCATCAGGCAACCAGTTGCTCATGCTTCAGTCTTTCAGAGGTTAATTGTGAATGAAACAGAAGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTTAGTTTTTCGAAGGTTAAGTATGCTCATTGGGGAAGAAGAAAGTACACTTTCAACTCCGGATGTCACCGACCTTCAGTTTTTCGAAGGTTAA

Coding sequence (CDS)

ATGAAGGGATCCCAAGAAAAATATGATTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTTGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAAAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGACAAGGAGGTCAAAACCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAGCCCATAACTTTGGCAGAATACTTCCCAAGATGCTTTCTCGATGATAGTCAAGGAGAGGCATTCGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAACGGTGACAGGTCCAGGAGATTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAGGCTAAAAGTGTCCTTATTGATGCGTTGATGGAGTCTAATGAGCCACAAGCAGATGCAAGGAAGGAAACTGTTGAGGATGTGAAGGCATCTAACCTAAAAAAGGGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAAAGGATGAGAAGTGTTCACTTGTCCTACGATACGTCCCTTTATCTCGGCATAAAAAGGGTAAATCACCTTTCACTAAATGTCCAAAAAGCATAAAGAAGAAGCTTCTAAAAGAAGGTCATGGTCTGCCTACAACGAGAAAAGGACTTGGATATAAGTCGCCTGAGCCGGTTCGTATAACAAGAAGAGGGAAGGCAAAAGTGGCAGACATAAATCATATAACAGTAAAGGAGGTTGATGACCCAAAAGAAAAAGAGAGTGTCAACCAACGAACTTCTGTTTTTAGGCTCATCAGGCAACCAGTTGCTCATGCTTCAGTCTTTCAGAGGTTAATTGTGAATGAAACAGAAGAAGAAAGTGCACAACCTACCAATAGCTCCACTCGATCTTTAGTTTTTCGAAGGTTAAGTATGCTCATTGGGGAAGAAGAAAGTACACTTTCAACTCCGGATGTCACCGACCTTCAGTTTTTCGAAGGTTAA

Protein sequence

MKGSQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPVVEESEDFFCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGPGDLSSFSIKDLLSLPQEAKSVLIDALMESNEPQADARKETVEDVKASNLKKGETSTSLVKPKVVKDEKCSLVLRYVPLSRHKKGKSPFTKCPKSIKKKLLKEGHGLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVKEVDDPKEKESVNQRTSVFRLIRQPVAHASVFQRLIVNETEEESAQPTNSSTRSLVFRRLSMLIGEEESTLSTPDVTDLQFFEG
Homology
BLAST of Spg034723 vs. NCBI nr
Match: TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 5.5e-40
Identity = 164/562 (29.18%), Postives = 220/562 (39.15%), Query Frame = 0

Query: 4   SQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPV 63
           SQEK   IE+++E WT+V  RKK+K +  +KE R +R+ ++  K+Q+ K KKKTR+ K +
Sbjct: 363 SQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLKLM 422

Query: 64  VEESEDFFCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGP 123
            +E +DF    + ITLA++FP  FL D Q E    V CH ++  E++ +P  S E     
Sbjct: 423 HKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVS 482

Query: 124 GDLSSFSIKDLLSLPQEAKSVLIDALMES------------------------------- 183
            DLS F++ DLLSLPQE K++LI+AL+ S                               
Sbjct: 483 KDLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLG 542

Query: 184 ----NEP----------------------------------------------------- 243
               N P                                                     
Sbjct: 543 SKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQ 602

Query: 244 ------------QAD--------------------------------------------- 303
                       +AD                                             
Sbjct: 603 GSQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSL 662

Query: 304 ARKETVEDVKASNLKKGETSTSLVKPKVVKDEKCS--LVLRYVPLSRHKKGKSPFTKCPK 342
           A KE    +   + +K E STS  K  ++ DEK S   +LRYVPLSR KKG+SPF + P+
Sbjct: 663 ASKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQ 722

BLAST of Spg034723 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-35
Identity = 146/481 (30.35%), Postives = 211/481 (43.87%), Query Frame = 0

Query: 4   SQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPV 63
           SQEK   IE+++EGWT+V  RKK+K +  +KESRL+ + ++  K+Q+ K KKKTR+ K V
Sbjct: 467 SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLV 526

Query: 64  VEESEDFFCPPQPITLAEYFPRCFLDDSQGE----------------AFE-TVTCHIVDV 123
            E+ +DF    + +TLA++FP  FL D Q E                 +E T  C  +D 
Sbjct: 527 HEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDF 586

Query: 124 VEDDDVPASS---------------------SETVTGPGDLSSFSIKDLLSLPQEAKS-- 183
            ++D +  S                       +  +    +   +++ L  L +E  +  
Sbjct: 587 SDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSK 646

Query: 184 VLIDALMESNEPQADAR--------------------------------KETVEDVKASN 243
           ++I    + ++   DA+                                +E+ +     +
Sbjct: 647 LVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFH 706

Query: 244 LKKGETSTSLVKPKVVKDEKCS--LVLRYVPLSRHKKGKSPFTKCPKSIK---------- 303
             K E STS  K  +V DEK S   +LRYVPLSR KKG+SPF + P+ +K          
Sbjct: 707 SGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKES 766

Query: 304 ------------------------------------------------------------ 334
                                                                       
Sbjct: 767 FTTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHEQ 826

BLAST of Spg034723 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.7e-33
Identity = 162/613 (26.43%), Postives = 216/613 (35.24%), Query Frame = 0

Query: 11   IEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPVVEESEDF 70
            IE+++EGW +V  RKK++    ++ESR +++ ++  K+Q+ K KKKT + K V  E  +F
Sbjct: 569  IEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVHNEDMNF 628

Query: 71   FCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGPGDLSSFS 130
              P + +TLA++ P+ FL D Q E  E V CH ++  E++ +P  S E      DLS F+
Sbjct: 629  SRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVSKDLSRFN 688

Query: 131  IKDLLSLPQEAKSVLIDALMESNEPQADARKETVE------------------------- 190
            ++DLLSLPQE K++LIDAL+ S    +     T E                         
Sbjct: 689  VEDLLSLPQETKTILIDALLNSRASSSSTPTMTYESGSYCMSIDFSDEDLLLGSKLHNRP 748

Query: 191  ------------------------------------------------------------ 250
                                                                        
Sbjct: 749  LYVSGYVREQRVDRILIDNGSAVNIMPKSTMWQLGILMDELSNSKLVIQGFNQGSQRAIG 808

Query: 251  ---------DVKAS---------------------------------------------- 310
                     D+KAS                                              
Sbjct: 809  MIRLELIIGDLKASALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDGVKKVE 868

Query: 311  -----------------------------------------------------------N 346
                                                                       N
Sbjct: 869  ADSNPFSEAESHFADAKFYSKNNNILEVLPAETPLTKGEDNSQLKSLATTEPHESARTFN 928

BLAST of Spg034723 vs. NCBI nr
Match: KAA0032751.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ98782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 2.9e-33
Identity = 141/457 (30.85%), Postives = 187/457 (40.92%), Query Frame = 0

Query: 4   SQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPV 63
           SQEK   IE+++EGWT+V  RKK+K +  +KESR +R+  +   +Q  K KKKTR+ K V
Sbjct: 73  SQEKERLIEEDDEGWTVVTRRKKRKSTQIQKESRFYRNYTRGNNTQNNKKKKKTRKLKLV 132

Query: 64  VEESEDFFCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGP 123
            EE +DF      +TLA++FP  FL D Q E    V C  ++  +++ +P    E     
Sbjct: 133 HEEDKDFPRTQCLVTLADFFPTRFLCDHQDENPGVVACRAINATKEESIPLRLLEEEVSK 192

Query: 124 GDLSSFSIKDLLSLPQEAKSVLIDA----------------------------------- 183
            DLS F++  LLSLPQE K++LI+A                                   
Sbjct: 193 -DLSRFNVDGLLSLPQETKTILINASLNLAASSSSAPTATYENSRTTYKLLLSRPWIHGN 252

Query: 184 -----------------------------------------LMESNEPQAD--------- 243
                                                    L   + P+A          
Sbjct: 253 GVVTSTLHQCFKFYQDVVKKVEADSNPFSEAESHFADAKFYLKNDSSPEAVYVEVPLVKR 312

Query: 244 ---------ARKETVEDVKASNLKKGETSTSLVKPKVVKDEKCS--LVLRYVPLSRHKKG 297
                    A +E  +  +  + +K E STS  K  ++  +K S   +LRYV LSR KKG
Sbjct: 313 EDNLQLKSLASEEPHKSTRTFHSEKSEASTSTTKSVILMGKKTSNPPILRYVCLSRCKKG 372

BLAST of Spg034723 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 3.8e-33
Identity = 161/613 (26.26%), Postives = 216/613 (35.24%), Query Frame = 0

Query: 11   IEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPVVEESEDF 70
            IE+++EGW +V  RKK++    ++ESR +++ ++  K+Q+ K KKKT + K V  E  +F
Sbjct: 569  IEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVHNEDMNF 628

Query: 71   FCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGPGDLSSFS 130
              P + +TLA++ P+ FL D Q E  E V CH ++  E++ +P  S E      DLS F+
Sbjct: 629  SRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVSKDLSRFN 688

Query: 131  IKDLLSLPQEAKSVLIDALMESNEPQADARKETVE------------------------- 190
            ++DLLSLPQE K++LIDAL+ S    +     T E                         
Sbjct: 689  VEDLLSLPQETKTILIDALLNSRASSSSTPTMTYESGSYCMSIDFSDEDLLLGSKLHNRP 748

Query: 191  ------------------------------------------------------------ 250
                                                                        
Sbjct: 749  LYVSGYVREQRVDRILIDNGSAVNIMPKSTMWQLGILMDELSNSKLVIQGFNQGSQRAIG 808

Query: 251  ---------DVKAS---------------------------------------------- 310
                     D+KAS                                              
Sbjct: 809  MIRLELIIGDLKASALFHVIDSRTTYKLLLGRPWIHGNGVVTSTLHQCFKFYQDGVKKVE 868

Query: 311  -----------------------------------------------------------N 346
                                                                       N
Sbjct: 869  ADSNPFSEAESHFADAKFYSKNNNILEVLPAETPLTKGEDNSQLKSLATTEPHESARTFN 928

BLAST of Spg034723 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.7e-40
Identity = 164/562 (29.18%), Postives = 220/562 (39.15%), Query Frame = 0

Query: 4   SQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPV 63
           SQEK   IE+++E WT+V  RKK+K +  +KE R +R+ ++  K+Q+ K KKKTR+ K +
Sbjct: 363 SQEKERLIEEDDERWTIVTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKKKKTRKLKLM 422

Query: 64  VEESEDFFCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGP 123
            +E +DF    + ITLA++FP  FL D Q E    V CH ++  E++ +P  S E     
Sbjct: 423 HKEDKDFPRTQRLITLADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVS 482

Query: 124 GDLSSFSIKDLLSLPQEAKSVLIDALMES------------------------------- 183
            DLS F++ DLLSLPQE K++LI+AL+ S                               
Sbjct: 483 KDLSRFNVDDLLSLPQEIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLG 542

Query: 184 ----NEP----------------------------------------------------- 243
               N P                                                     
Sbjct: 543 SKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQ 602

Query: 244 ------------QAD--------------------------------------------- 303
                       +AD                                             
Sbjct: 603 GSQRVIDGVKKVEADSNPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSL 662

Query: 304 ARKETVEDVKASNLKKGETSTSLVKPKVVKDEKCS--LVLRYVPLSRHKKGKSPFTKCPK 342
           A KE    +   + +K E STS  K  ++ DEK S   +LRYVPLSR KKG+SPF + P+
Sbjct: 663 ASKEPHISIGTFHSEKSEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQ 722

BLAST of Spg034723 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-35
Identity = 146/481 (30.35%), Postives = 211/481 (43.87%), Query Frame = 0

Query: 4   SQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPV 63
           SQEK   IE+++EGWT+V  RKK+K +  +KESRL+ + ++  K+Q+ K KKKTR+ K V
Sbjct: 467 SQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRRGNKTQKNKKKKKTRKLKLV 526

Query: 64  VEESEDFFCPPQPITLAEYFPRCFLDDSQGE----------------AFE-TVTCHIVDV 123
            E+ +DF    + +TLA++FP  FL D Q E                 +E T  C  +D 
Sbjct: 527 HEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASASSSSAPIATYESTPYCMSIDF 586

Query: 124 VEDDDVPASS---------------------SETVTGPGDLSSFSIKDLLSLPQEAKS-- 183
            ++D +  S                       +  +    +   +++ L  L +E  +  
Sbjct: 587 SDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNIMPKSTMRQLGILMEELSNSK 646

Query: 184 VLIDALMESNEPQADAR--------------------------------KETVEDVKASN 243
           ++I    + ++   DA+                                +E+ +     +
Sbjct: 647 LVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKEDNLQLKSLASRESHKSTGTFH 706

Query: 244 LKKGETSTSLVKPKVVKDEKCS--LVLRYVPLSRHKKGKSPFTKCPKSIK---------- 303
             K E STS  K  +V DEK S   +LRYVPLSR KKG+SPF + P+ +K          
Sbjct: 707 SGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIEVLKES 766

Query: 304 ------------------------------------------------------------ 334
                                                                       
Sbjct: 767 FTTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMAKAGYDFTTHTEFKSLKIHEQ 826

BLAST of Spg034723 vs. ExPASy TrEMBL
Match: A0A5D3BG93 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00910 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-33
Identity = 141/457 (30.85%), Postives = 187/457 (40.92%), Query Frame = 0

Query: 4   SQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPV 63
           SQEK   IE+++EGWT+V  RKK+K +  +KESR +R+  +   +Q  K KKKTR+ K V
Sbjct: 73  SQEKERLIEEDDEGWTVVTRRKKRKSTQIQKESRFYRNYTRGNNTQNNKKKKKTRKLKLV 132

Query: 64  VEESEDFFCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGP 123
            EE +DF      +TLA++FP  FL D Q E    V C  ++  +++ +P    E     
Sbjct: 133 HEEDKDFPRTQCLVTLADFFPTRFLCDHQDENPGVVACRAINATKEESIPLRLLEEEVSK 192

Query: 124 GDLSSFSIKDLLSLPQEAKSVLIDA----------------------------------- 183
            DLS F++  LLSLPQE K++LI+A                                   
Sbjct: 193 -DLSRFNVDGLLSLPQETKTILINASLNLAASSSSAPTATYENSRTTYKLLLSRPWIHGN 252

Query: 184 -----------------------------------------LMESNEPQAD--------- 243
                                                    L   + P+A          
Sbjct: 253 GVVTSTLHQCFKFYQDVVKKVEADSNPFSEAESHFADAKFYLKNDSSPEAVYVEVPLVKR 312

Query: 244 ---------ARKETVEDVKASNLKKGETSTSLVKPKVVKDEKCS--LVLRYVPLSRHKKG 297
                    A +E  +  +  + +K E STS  K  ++  +K S   +LRYV LSR KKG
Sbjct: 313 EDNLQLKSLASEEPHKSTRTFHSEKSEASTSTTKSVILMGKKTSNPPILRYVCLSRCKKG 372

BLAST of Spg034723 vs. ExPASy TrEMBL
Match: A0A5A7TPR5 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00040 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-32
Identity = 91/202 (45.05%), Postives = 119/202 (58.91%), Query Frame = 0

Query: 159 ARKETVEDVKASNLKKGETSTSLVKPKVVKDEKCS--LVLRYVPLSRHKKGKSPFTKCPK 218
           A KE  + +   + +KGE STS  K  ++ DEK S  L+LRYVPLSR +KG+SPF K P+
Sbjct: 56  ASKEPHKSIGTFHSRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQ 115

Query: 219 SIK-------------KKLLKEGHGLPTTRKGLGYKSPEPVRITRRGKAKVADINHITVK 278
            +K             KKLL+EGH +P +RKG GYKSPEP+ I R+ K KV D NHITV 
Sbjct: 116 GLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVG 175

Query: 279 EVDDPKEKESVNQRTSVFRLIRQPVAHASVFQRLIVNETEEESAQPTNSSTRSLVFRRLS 338
           EVD  +EKE  +QR S F  IR  V   +VF+RL V +TE +  Q T+S  +    +RL+
Sbjct: 176 EVDSMEEKEGGSQRISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQRLT 235

Query: 339 MLIGEEESTLSTPDVTDLQFFE 346
           M   +E+ T      T    FE
Sbjct: 236 MTFKKEKCTCQALRATRPSAFE 257

BLAST of Spg034723 vs. ExPASy TrEMBL
Match: A0A5D3BSG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00710 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-31
Identity = 158/599 (26.38%), Postives = 215/599 (35.89%), Query Frame = 0

Query: 4   SQEKYDSIEDENEGWTLVVCRKKQKQSYARKESRLFRDSKKKVKSQRKKGKKKTRRSKPV 63
           SQEK   IE+++EGWT+V  RKK+K +  +KE R +R+ +K  K+Q+ K KKKTR+ K +
Sbjct: 116 SQEKERLIEEDDEGWTIVTRRKKRKSTLIQKEHRFYRNYRKGNKAQKNKKKKKTRKLKLM 175

Query: 64  VEESEDFFCPPQPITLAEYFPRCFLDDSQGEAFETVTCHIVDVVEDDDVPASSSETVTGP 123
            EE +DF    + +TLA++FP  FL D Q E    V CH ++ +E++++P  S E     
Sbjct: 176 HEEDKDFPQTQRLVTLADFFPTRFLGDHQDENPRVVECHAINAIEEENIPLRSLEEEGVS 235

Query: 124 GDLSSFSIKDLLSLPQEAKSVLIDALMESNEPQADARKETVE------------------ 183
            DLS F++ DLLSLPQE K +LI+AL+ S    + A   T E                  
Sbjct: 236 KDLSRFNVNDLLSLPQETKIILINALLNSTASSSSAPTATYESTPYCMSIDFSYEDLLLG 295

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 296 SKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTMRQLGILMEELSNSKLIIQGFNQ 355

Query: 244 ----------------DVKASNL------------------------------------- 303
                           D+K S L                                     
Sbjct: 356 GSQRVIGMICLELIIGDLKTSALFHVIDSRITYKLLLGRSWIHGNGVVTSTLHQCFKFYQ 415

Query: 304 ---KKGETSTSL----------VKPKVVKDEKCSLVLRYVPL------------------ 346
              KK E  ++            K  +  D     V   VPL                  
Sbjct: 416 DGVKKVEADSNPFSEVESHFADAKFYLKNDSSSEAVSVEVPLLNREDNLQLKSLTSKEPQ 475

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK05005.15.5e-4029.18ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0061113.12.4e-3530.35ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp... [more]
XP_031735972.11.7e-3326.43uncharacterized protein LOC116401693 [Cucumis sativus][more]
KAA0032751.12.9e-3330.85ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ98782.1 ty3-gyp... [more]
XP_031739134.13.8e-3326.26uncharacterized protein LOC116402863 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C0W62.7e-4029.18Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BY541.2e-3530.35Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BG931.4e-3330.85Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TPR54.6e-3245.05RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BSG51.7e-3126.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg034723.1Spg034723.1mRNA