Spg034558 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034558
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold4: 13423599 .. 13427678 (+)
RNA-Seq Expression	Spg034558
Synteny	Spg034558

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAGAATTTTGAAGCTCCAAGCCAGAGTCAGAGAATTCAGAGAAACTCCATCAAGATTGAAGACTGAAGACTGAAGACTCCTTGAAATCCATAAGTTTCAAAGTGTTGAACACTTCTTGAAGATTAAAGACTCCTTCAAGATTAGAAGACTTCAAGCTCCAAGAATCCATTGAAGCTTCAGACTCGAGATCAAGCGTTCCAGCCCTCGAGTGAAACACATCCACACACAAGAGAGAGAATCAGAGGATTAACATTAGAGATTGTACACACGCATACAAATATTAATACAAATATATTGTTTATTCCACGTGTCTCCATCTTCGAAGTTACGTGTGAACAAATTGGCACGCCCAGTGGGACCTCTCTACCTCTCATCTCTTTCTCTTGTTAAAAGATCCAACCAACGTGATGGCATCAAAGAAAGCTCCCGCGAAGGTTACAACATCAAGCGACTCTTACACTGGTCCTATCACTCGTAGTCGTTCCCAAGGAATTGAGATCAGGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAAGTTGTAGTCAAAGACAACCCGCTGTTCGAATCTGTTGTTCCAACATCTAAGCAGCCAAAGGATGCACTAAACCCTGATGTGATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGTAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATCTGGAGATGGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGGCTGAGTCTAGTCAGACCCCTACTGCAGGAAAGAACGATAAGACCCCTACTGCAAGAAAAAATGATAAGGGGAAGGCTATCGTGCATGAGGACCAACCGCAACACTCTGCGTCAGTTGCCTCTTTGTCTGTCCAACAGCTGCAAGACATGATCATGAATTCCATCAGGGCTCAATATGGTGGACCCACTCAAAGTTCCCTCTTGTATTCTAAACCTTATACAAAGAGGATTGACAATCTGAGACTGCCCTCTGGCTATCAGCCTCCCAAGTTCCAACAGTTTGACGGAAAGGACAACCCAAAGCAGCACATCGCCCACTTTGTTGAGACCTGTGAGAACGCTGGTACTCAGGGAGATTTGCTTGTTAAGCAATTTGTCAGAACACTGAAAGGAAACGCGTTCGATTGGTACACTGACCTGGAGCCTGAGACAATTGACAGTTGGGAACAGATTGAGAGAGAGTTTCTGAATCGCTTCAACAGTACGAGGCGAACAGTTAGTATGACGAAACTCACGAGCACAAAGCAACGGAAGGGTGAGCTAGTCATCGACTACATCAACCGTTGGAGAGCCTTGAGTCTCGACTGTAAAGATAGACTCTCCGAGGTATCCTCTGTTGAAATGTGCACCCAAGGCATGCACTGGGGACTTCTTTACATCTTGCAAGGGGATAAAACCCCGGACCTTTGAAGAATTGGCGACTCGCGCTCATGATATGGAGTTGAACATCGCTAGTAGGGGGAACAAAGATCCCATAGTCCCAGACATGAGGAAAGAAAAGAAGGAAGTCAAAGGCACTGAGAAAGTTACGAAGAGTGCCACAAAAGAATCCATGGTCGTCAACACGACCCCGTTGAAATTTTCCTCCAAAGGAAAAGAAAGTAAATCCGATAAGCGAATGGAGACAGGCGAGAGACGTCGCCTAACTTTAAAAGAAAGACAAGAAAAAGTGTATCCGTTTCCAGATTCCGACGTCCTAGATATGTTGGAACAATTGTTGGAGAAGCAGTTAATTGAACTCCTCGAATGAAAACGACCGGAAGAGTTAGGGAAAGTCAATGATCCTAACTACTGCAAGTATCACCGAGTCGTTAGCCATCCAGTGGAGAAATAATTTGTTTTAAAAGAGCTAATCCTTAAGTTGGCTCGTGAAAAGAAAATTGAGCTGGACCTTGATGAGGTGGCTCAAGCGAATCATGCAACAATAATGGCGAATGTGGGGGATCAAATTCCTTTAATTTCCTCATGTGATTATGAAGAGAGGCTGATTCAATTTGGGACCCTTGATCCCGTAGTGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAACAATATAATTCCATTGAAGATGAGAATGAAGGCTGGACCCTTGTCGTTCGTCGCAAGAAGCAAAAACAAAGTTACGCACGGTAAGAGTCCCACTTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGGAAAAAAGAAATCAAGGAGGTCAAAGCATGTTGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATGGTCAAGGAGAAGCACTTGAAATCGTCACTTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAATGCATTGATAGAATCCGATGGTACAAACATCCCAACCTCCGAGGCACGCACATGTGCTTCGTGTTGCATGACTATAGGATTTTCCGATGAAGATTTGCTGCTAGGGTCAAAGCCTCACAATAGACCTTTATTCGTCTCGGGATACATCCGAGAACAGAGGGTAGGTCGGATCCTCATCGACGATGGATCAGCTGTCAATATAATGTCTAAGTCAACCATGAAGCAATTAGGCATCTCGATGGAAGAATTATCAAACAGTAAATTGGTGATTCAAGGTTTCAATCAAGGCGGACAACGAGCGATTGGCATGATACGTCTCGAGCTCATCATTGGGGATTTGAAGGCCGATACTTTGTTTCATGTGATAGATTCCAAGACCACTTATAAGCTGCTATTAGGTCGTCCTTGGATCCATGGCAATGGAGTGATAACCTCTACATTGCACCAGTGCTTCAAGTTCTATCAAAATGGCATTAAGAAAGTTGAAGCTGACACTAACCCATTTTCAGAAGCTGAATCCCATTTCGCTGATGCAAAATTTTATATGAAGAGCGACAACACAGGGGAAACTATACCTACAGAAATCCCCTTGATAAAAAAGAATGATAAACTCGACTTAGAGCCACAAGCAGATGCAAGAAAGGAAGTTGTTGAGGATGTGAAGGCATGTGACCTGAAAAAGTGTGAAACATCTACAAGCCTTGTGAAACCTAAAGTTGTAGAGGATGAGAAATGTTCACCTGTCCTACGATACGCCCCTTTATCTCGGCGTAAAAAGGGTGAATCACCTTTCACTCAATGTCCGAAAAGCATAAAGGTCGGTGACGTTGAAATTCTGAAGGAAAGTTTCACTATGCCTCTTACAAAGATCACAAAGCAGGAGGTTAAGAAACCTGAGGATGACCAGAAAAAAACGATTTTGCCTGACAAACAGACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCGAAAGCGGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAGGGTTTTTTATGACAGATCTGAGCTCTCTGCAACACAGAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAATTGCCCGAACCGGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCACATCAGGCCACCAGTTGCTCGTGCTTCTGTCTTTCAGAGGATAATTGTGAATGAAACAAAAGAAGAAAGTGCACAACTTACCAATAGCTCCACTCGATCTTCAGTTTTTCGAAGGTTAAGTATGCATGTTGGTGAAGAAGAGAGTACACTTTCAACTCCGGATGTCACGCGACCTTCAGCTTTTCGAAGGTTAAATATGCCCGTTGGGGAAGAAGAAGGTACATTTTCAACTTCAGATGTGACTCGACCATCACCGACTTCAATATGA

mRNA sequence

ATGGGGGAGAATTTTGAAGCTCCAAGCCAGAGAATTGAGATCAGGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAAGTTGTAGTCAAAGACAACCCGCTGTTCGAATCTGTTGTTCCAACATCTAAGCAGCCAAAGGATGCACTAAACCCTGATGTGATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGTAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATCTGGAGATGGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGGCTGAGTCTAAGAGGCTGATTCAATTTGGGACCCTTGATCCCGTAGTGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAACAATATAATTCCATTGAAGATGAGAATGAAGGCTGGACCCTTGTCGTTCGTCGCAAGAAGCAAAAACAAAGTTACGCACGGAGGTCAAAGCATGTTGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATGGTCAAGGAGAAGCACTTGAAATCGTCACTTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAAGGATGAGAAATGTTCACCTGTCCTACGATACGCCCCTTTATCTCGGCGTAAAAAGGGTGAATCACCTTTCACTCAATGTCCGAAAAGCATAAAGAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAATTGCCCGAACCGGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCACATCAGGCCACCAGTTGCTCGTGCTTCTGTCTTTCAGAGGATAATTGTGAATGAAACAAAAGAAGAAAGTGCACAACTTACCAATAGCTCCACTCGATCTTCAGTTTTTCGAAGGTTAAGTATGCATGTTGGTGAAGAAGAGAGTACACTTTCAACTCCGGATGTCACGCGACCTTCAGCTTTTCGAAGGTTAAATATGCCCGTTGGGGAAGAAGAAGGTACATTTTCAACTTCAGATGTGACTCGACCATCACCGACTTCAATATGA

Coding sequence (CDS)

ATGGGGGAGAATTTTGAAGCTCCAAGCCAGAGAATTGAGATCAGGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCCTCTAAGGATAAAGTTGTAGTCAAAGACAACCCGCTGTTCGAATCTGTTGTTCCAACATCTAAGCAGCCAAAGGATGCACTAAACCCTGATGTGATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGTAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATCTGGAGATGGCCTATTTGAAGAACCAGCTGCAAAACCGAGAAACGGCTGAGTCTAAGAGGCTGATTCAATTTGGGACCCTTGATCCCGTAGTGGTTCGATTCCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAACAATATAATTCCATTGAAGATGAGAATGAAGGCTGGACCCTTGTCGTTCGTCGCAAGAAGCAAAAACAAAGTTACGCACGGAGGTCAAAGCATGTTGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATGGTCAAGGAGAAGCACTTGAAATCGTCACTTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAAGGATGAGAAATGTTCACCTGTCCTACGATACGCCCCTTTATCTCGGCGTAAAAAGGGTGAATCACCTTTCACTCAATGTCCGAAAAGCATAAAGAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAATTGCCCGAACCGGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACATAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAGAAGAGAGCGTCGACCAACGAGCTTCTGTTTTTAGGCACATCAGGCCACCAGTTGCTCGTGCTTCTGTCTTTCAGAGGATAATTGTGAATGAAACAAAAGAAGAAAGTGCACAACTTACCAATAGCTCCACTCGATCTTCAGTTTTTCGAAGGTTAAGTATGCATGTTGGTGAAGAAGAGAGTACACTTTCAACTCCGGATGTCACGCGACCTTCAGCTTTTCGAAGGTTAAATATGCCCGTTGGGGAAGAAGAAGGTACATTTTCAACTTCAGATGTGACTCGACCATCACCGACTTCAATATGA

Protein sequence

MGENFEAPSQRIEIREDHTPLAVASRISKLIEESSKDKVVVKDNPLFESVVPTSKQPKDALNPDVMSVMMADVDQDERMVEMERKLNLLMKAVDERDLEMAYLKNQLQNRETAESKRLIQFGTLDPVVVRFRKEATMKGSQEQYNSIEDENEGWTLVVRRKKQKQSYARRSKHVVEESEDFFCPPQPITLAEYFPRRFLDDGQGEALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKKDEKCSPVLRYAPLSRRKKGESPFTQCPKSIKKKLLKEGYSLPTTRKGLGYKLPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETKEESAQLTNSSTRSSVFRRLSMHVGEEESTLSTPDVTRPSAFRRLNMPVGEEEGTFSTSDVTRPSPTSI

Homology

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BLAST of Spg034558 vs. NCBI nr
Match: KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 8.3e-33
Identity = 98/238 (41.18%), Postives = 131/238 (55.04%), Query Frame = 0


Query: 224 PASSSGTV-AGPGDLSSFSIKDLLSLPQEAKKDEKCS--PVLRYAPLSRRKKGESPFTQC 283
           P  S GT  +G  + S+ + K ++ +      DEK S  P+LRY PLSRRKKGESPF + 
Sbjct: 192 PHKSIGTFHSGKSEASTNTAKSVILM------DEKTSNPPILRYVPLSRRKKGESPFVES 251

Query: 284 PKSIK-------------------------------------------KKLLKEGYSLPT 343
           P+ +K                                           KKLL+EG+ +P 
Sbjct: 252 PQGLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPM 311

Query: 344 TRKGLGYKLPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARA 403
           +RKGLGYK PEP+RITRKGK KV D NHITV+EVD  +E+E  +QR S F  I P VARA
Sbjct: 312 SRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARA 371

Query: 404 SVFQRIIVNETKEESAQLTNSSTRSSVFRRLSMHVGEEESTLSTPDVTRPSAFRRLNM 416
            VF+R+ + E K +  Q T++  R S F+RL++   EE+    T   T+PSAF RL++
Sbjct: 372 PVFERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSI 423

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BLAST of Spg034558 vs. NCBI nr
Match: TYK28162.1 (uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 7.7e-31
Identity = 96/248 (38.71%), Postives = 131/248 (52.82%), Query Frame = 0


Query: 224 PASSSGTV-AGPGDLSSFSIKDLLSLPQEAKKDEKCS--PVLRYAPLSRRKKGESPFTQC 283
           P  S GT  +G  + S+ + K ++ +      DEK S  P+LRY PLSRRKKGESPF + 
Sbjct: 156 PHKSIGTFHSGKSEASTNTAKSVILM------DEKTSNPPILRYVPLSRRKKGESPFVES 215

Query: 284 PKSIK-----------------------------------------------------KK 343
           P+ +K                                                     KK
Sbjct: 216 PQGLKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKK 275

Query: 344 LLKEGYSLPTTRKGLGYKLPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRASVF 403
           LL+EG+ +P +RKGLGYK PEP+RITRKGK KV D NHITV+EVD  +E+E  +QR S F
Sbjct: 276 LLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTF 335

Query: 404 RHIRPPVARASVFQRIIVNETKEESAQLTNSSTRSSVFRRLSMHVGEEESTLSTPDVTRP 416
             I P VARA VF+R+ + E + +  Q T++  + S F+RL++   EE+    T   T+P
Sbjct: 336 DRISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKP 395

[Close]

BLAST of Spg034558 vs. NCBI nr
Match: KAA0043405.1 (hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-30
Identity = 91/208 (43.75%), Postives = 124/208 (59.62%), Query Frame = 0


Query: 224 PASSSGTV-AGPGDLSSFSIKDLLSLPQEAKKDEKCSP--VLRYAPLSRRKKGESPFTQC 283
           P  S GT  +  G+ S+ + K ++ +      DEK S   +LRY PLSRR+KGESPF + 
Sbjct: 60  PHKSIGTFHSRKGEASTSTTKSMILM------DEKTSNPLILRYVPLSRRQKGESPFVKF 119

Query: 284 PKSIK-------------KKLLKEGYSLPTTRKGLGYKLPEPVRITRKGKAKVADINHIT 343
           P+ +K             KKLL+EG+ +P +RKG GYK PEP+ I RK K KV D NHIT
Sbjct: 120 PQGLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHIT 179

Query: 344 VEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETKEESAQLTNSSTRSSVFRR 403
           V EVD  +E+E   QR S F  IRP V R +VF+R+ V +T+ +  Q T+S  + S  +R
Sbjct: 180 VGEVDSMEEKEGGSQRISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQR 239

Query: 404 LSMHVGEEESTLSTPDVTRPSAFRRLNM 416
           L+M   +E+ T      TRPSAF RL++
Sbjct: 240 LTMTFKKEKCTCQALRATRPSAFERLSV 261

[Close]

BLAST of Spg034558 vs. NCBI nr
Match: TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-30
Identity = 148/591 (25.04%), Postives = 196/591 (33.16%), Query Frame = 0


Query: 110 RETAESKRLIQFGTLDPVVVRFRKEATMKGSQEQYNSIEDENEGWTLVVRRKK------- 169
           RE      L +FGT +PVVVRF +E   + SQE+   IE+++E WT+V RRKK       
Sbjct: 333 REKKIELDLEEFGTFEPVVVRFHQEVAPEDSQEKERLIEEDDERWTIVTRRKKRKSTPIQ 392

Query: 170 ------------------QKQSYARRSKHVVEESEDFFCPPQPITLAEYFPRRFLDDGQG 229
                             +K+   R+ K + +E +DF    + ITLA++FP RFL D Q 
Sbjct: 393 KEHRFYRNYRRWNKAQKNKKKKKTRKLKLMHKEDKDFPRTQRLITLADFFPTRFLGDHQD 452

Query: 230 EALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAK----------- 289
           E   +V CH ++  E++ +P  S        DLS F++ DLLSLPQE K           
Sbjct: 453 ENPGVVACHAINATEEESIPLRSLEEEKVSKDLSRFNVDDLLSLPQEIKTILINALLNSA 512

Query: 290 ------------------------------------------------------------ 349
                                                                       
Sbjct: 513 ASSSSASTVTYESTPYCMSIDFSNDDLLLGSKLHNRPLYVSGYVREQRVDRILVDNGSAV 572

Query: 350 ------------------------------------------------------------ 407
                                                                       
Sbjct: 573 NIMPKSTIRQLGILMKELSNSKLVIQGFNQGSQRVIDGVKKVEADSNPFSEAESHFADAK 632

[Close]

BLAST of Spg034558 vs. NCBI nr
Match: KAA0047672.1 (uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa] >TYK08327.1 uncharacterized protein E5676_scaffold648G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 3.8e-30
Identity = 83/190 (43.68%), Postives = 118/190 (62.11%), Query Frame = 0


Query: 232 AGPGDLSSFSIKDLLSLPQEAKKDEKCSPVLRYAPLSRRKKGESPFTQCPKSIKK---KL 291
           +G  + S+ + K ++ + +         P+LRY PLSR KKGESPF + P+ +K    ++
Sbjct: 702 SGKNEASTSTAKSVILMNENTSN----PPILRYVPLSRCKKGESPFVESPQGLKVGDIEV 761

Query: 292 LKEGYSL---PTTRKGLGYKLPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRAS 351
           LKE +++     T+KGLGYK PEP+RITRKGK KV D NHITV+EVD  + +E   QR S
Sbjct: 762 LKESFTIQLTKITKKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEGKEGHSQRTS 821

Query: 352 VFRHIRPPVARASVFQRIIVNETKEESAQLTNSSTRSSVFRRLSMHVGEEESTLSTPDVT 411
            F  I P VARA VF+R+ + E K +  Q T++  R S F+RL++   EE+        T
Sbjct: 822 AFDRISPHVARAPVFERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQASMTT 881

Query: 412 RPSAFRRLNM 416
           +PSAF RL++
Sbjct: 882 KPSAFERLSI 887

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BLAST of Spg034558 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-33
Identity = 98/238 (41.18%), Postives = 131/238 (55.04%), Query Frame = 0


Query: 224 PASSSGTV-AGPGDLSSFSIKDLLSLPQEAKKDEKCS--PVLRYAPLSRRKKGESPFTQC 283
           P  S GT  +G  + S+ + K ++ +      DEK S  P+LRY PLSRRKKGESPF + 
Sbjct: 192 PHKSIGTFHSGKSEASTNTAKSVILM------DEKTSNPPILRYVPLSRRKKGESPFVES 251

Query: 284 PKSIK-------------------------------------------KKLLKEGYSLPT 343
           P+ +K                                           KKLL+EG+ +P 
Sbjct: 252 PQGLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPM 311

Query: 344 TRKGLGYKLPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRASVFRHIRPPVARA 403
           +RKGLGYK PEP+RITRKGK KV D NHITV+EVD  +E+E  +QR S F  I P VARA
Sbjct: 312 SRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARA 371

Query: 404 SVFQRIIVNETKEESAQLTNSSTRSSVFRRLSMHVGEEESTLSTPDVTRPSAFRRLNM 416
            VF+R+ + E K +  Q T++  R S F+RL++   EE+    T   T+PSAF RL++
Sbjct: 372 PVFERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTTKPSAFERLSI 423

[Close]

BLAST of Spg034558 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.7e-31
Identity = 96/248 (38.71%), Postives = 131/248 (52.82%), Query Frame = 0


Query: 224 PASSSGTV-AGPGDLSSFSIKDLLSLPQEAKKDEKCS--PVLRYAPLSRRKKGESPFTQC 283
           P  S GT  +G  + S+ + K ++ +      DEK S  P+LRY PLSRRKKGESPF + 
Sbjct: 156 PHKSIGTFHSGKSEASTNTAKSVILM------DEKTSNPPILRYVPLSRRKKGESPFVES 215

Query: 284 PKSIK-----------------------------------------------------KK 343
           P+ +K                                                     KK
Sbjct: 216 PQGLKIDLTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHTDFKSLKIHEQPKLSSTQKK 275

Query: 344 LLKEGYSLPTTRKGLGYKLPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRASVF 403
           LL+EG+ +P +RKGLGYK PEP+RITRKGK KV D NHITV+EVD  +E+E  +QR S F
Sbjct: 276 LLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKEGDNQRTSTF 335

Query: 404 RHIRPPVARASVFQRIIVNETKEESAQLTNSSTRSSVFRRLSMHVGEEESTLSTPDVTRP 416
             I P VARA VF+R+ + E + +  Q T++  + S F+RL++   EE+    T   T+P
Sbjct: 336 DRISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGICQTSMTTKP 395

[Close]

BLAST of Spg034558 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.4e-31
Identity = 148/591 (25.04%), Postives = 196/591 (33.16%), Query Frame = 0


Query: 110 RETAESKRLIQFGTLDPVVVRFRKEATMKGSQEQYNSIEDENEGWTLVVRRKK------- 169
           RE      L +FGT +PVVVRF +E   + SQE+   IE+++E WT+V RRKK       
Sbjct: 333 REKKIELDLEEFGTFEPVVVRFHQEVAPEDSQEKERLIEEDDERWTIVTRRKKRKSTPIQ 392

Query: 170 ------------------QKQSYARRSKHVVEESEDFFCPPQPITLAEYFPRRFLDDGQG 229
                             +K+   R+ K + +E +DF    + ITLA++FP RFL D Q 
Sbjct: 393 KEHRFYRNYRRWNKAQKNKKKKKTRKLKLMHKEDKDFPRTQRLITLADFFPTRFLGDHQD 452

Query: 230 EALEIVTCHIVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAK----------- 289
           E   +V CH ++  E++ +P  S        DLS F++ DLLSLPQE K           
Sbjct: 453 ENPGVVACHAINATEEESIPLRSLEEEKVSKDLSRFNVDDLLSLPQEIKTILINALLNSA 512

Query: 290 ------------------------------------------------------------ 349
                                                                       
Sbjct: 513 ASSSSASTVTYESTPYCMSIDFSNDDLLLGSKLHNRPLYVSGYVREQRVDRILVDNGSAV 572

Query: 350 ------------------------------------------------------------ 407
                                                                       
Sbjct: 573 NIMPKSTIRQLGILMKELSNSKLVIQGFNQGSQRVIDGVKKVEADSNPFSEAESHFADAK 632

[Close]

BLAST of Spg034558 vs. ExPASy TrEMBL
Match: A0A5A7TPR5 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00040 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.4e-31
Identity = 91/208 (43.75%), Postives = 124/208 (59.62%), Query Frame = 0


Query: 224 PASSSGTV-AGPGDLSSFSIKDLLSLPQEAKKDEKCSP--VLRYAPLSRRKKGESPFTQC 283
           P  S GT  +  G+ S+ + K ++ +      DEK S   +LRY PLSRR+KGESPF + 
Sbjct: 60  PHKSIGTFHSRKGEASTSTTKSMILM------DEKTSNPLILRYVPLSRRQKGESPFVKF 119

Query: 284 PKSIK-------------KKLLKEGYSLPTTRKGLGYKLPEPVRITRKGKAKVADINHIT 343
           P+ +K             KKLL+EG+ +P +RKG GYK PEP+ I RK K KV D NHIT
Sbjct: 120 PQGLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHIT 179

Query: 344 VEEVDDSKEEESVDQRASVFRHIRPPVARASVFQRIIVNETKEESAQLTNSSTRSSVFRR 403
           V EVD  +E+E   QR S F  IRP V R +VF+R+ V +T+ +  Q T+S  + S  +R
Sbjct: 180 VGEVDSMEEKEGGSQRISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSSLNKRSALQR 239

Query: 404 LSMHVGEEESTLSTPDVTRPSAFRRLNM 416
           L+M   +E+ T      TRPSAF RL++
Sbjct: 240 LTMTFKKEKCTCQALRATRPSAFERLSV 261

[Close]

BLAST of Spg034558 vs. ExPASy TrEMBL
Match: A0A5D3C8N8 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001250 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.9e-30
Identity = 83/190 (43.68%), Postives = 118/190 (62.11%), Query Frame = 0


Query: 232 AGPGDLSSFSIKDLLSLPQEAKKDEKCSPVLRYAPLSRRKKGESPFTQCPKSIKK---KL 291
           +G  + S+ + K ++ + +         P+LRY PLSR KKGESPF + P+ +K    ++
Sbjct: 702 SGKNEASTSTAKSVILMNENTSN----PPILRYVPLSRCKKGESPFVESPQGLKVGDIEV 761

Query: 292 LKEGYSL---PTTRKGLGYKLPEPVRITRKGKAKVADINHITVEEVDDSKEEESVDQRAS 351
           LKE +++     T+KGLGYK PEP+RITRKGK KV D NHITV+EVD  + +E   QR S
Sbjct: 762 LKESFTIQLTKITKKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEGKEGHSQRTS 821

Query: 352 VFRHIRPPVARASVFQRIIVNETKEESAQLTNSSTRSSVFRRLSMHVGEEESTLSTPDVT 411
            F  I P VARA VF+R+ + E K +  Q T++  R S F+RL++   EE+        T
Sbjct: 822 AFDRISPHVARAPVFERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQASMTT 881

Query: 412 RPSAFRRLNM 416
           +PSAF RL++
Sbjct: 882 KPSAFERLSI 887

The following BLAST results are available for this feature:

BLAST of Spg034558 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055957.1	8.3e-33	41.18	uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]	[more]
TYK28162.1	7.7e-31	38.71	uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]	[more]
KAA0043405.1	1.3e-30	43.75	hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]	[more]
TYK05005.1	1.3e-30	25.04	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047672.1	3.8e-30	43.68	uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa] >TYK...	[more]

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BLAST of Spg034558 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg034558 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UMY2	4.0e-33	41.18	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DXC7	3.7e-31	38.71	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3C0W6	6.4e-31	25.04	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TPR5	6.4e-31	43.75	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C8N8	1.9e-30	43.68	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00125...	[more]

Pages

BLAST of Spg034558 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 420..437
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 392..437

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034558.1	Spg034558.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process