Spg030340 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030340
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold6: 26395245 .. 26397337 (-)
RNA-Seq Expression	Spg030340
Synteny	Spg030340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACAAAGTCTTATGATTTGAAGAAGGCAGTGTCAGGACTGACTTTTAAGGAGCCAAGGTCGATCAATACACTAAGGAACTCAAAATTTGCAATAGCATGAAAAGCACCCGAGGACGACCCTATAGTCTGATTGTGTTAATCACATACATGACTAATGGAAAAGAAACACCTACACAGGGGGCTTCAAAATAGTAAACTACATTTGTAGTTGAGGTTAAGACCTAAGTCATTTCACACAAACATAGCGAATTGCAAAAACCAGAACAATCTCTTTTGCAGATATTTTAGTTACAAACAAGAAGTCAAATACCGATTGGTGATAAAAAGGCTCATCTGGAAATCGATTTTCATCCATCTAGAGGAGACCCTCACAATAAAGCATCTAGGGCTAGGCTTGGAATGTTTGAACTCAAAAGGGCTTATGTATCTGCCCAGGTGAAGTGAAGAGGAAATTAGCACACAAATCGACACGAGTGAGAATTATACTCTTAAATTGGGCTTAGGGCGTTTGACTTGTAGTAACAGGCCATCCCTGAATCCCAATTCAAGAGTGAGGGCTTAATGTTGTGGGTGAATTTGGACCTAGTTCTAAATAAAGTCAGAATGATAAAAGCCCAGAGGAGAAACAAGCCCACGGAGGCCCATTGGGCCCGAATGGCTATTCCCTCCCCTAAAAGGAAGAGGAAAACCCTAACTTCAACTATAAATAGAAGAGACTAACCCAAAGTAGGGGGACTGAATTGGGTATCTATTTTCTTCCTCTATATTATTATTTTATTATTATTTTACTTGTTTCACCTATGATCTCCCAACTGACTTAAGCATCAGAGTCGGTGTGGCAAGCACCACACCGGTGCACAGTTTTCTCTTTTTTTGCAGGCCACGTCTTTCCCCTCTCAAATAAATTCACCGTTGATGTCACGTGAAGGTCAGGTGAGTCGCTTGGCCAAATTTTGGCATCAACATAGTAGTTATGTGAATTTTAAAAAAACTCAAAATTGAGGAGAGAATAGAATTTACGAGCTATGTGAGATGAAGGGTAGATTGCATAATTATCTTTAAAAATTGAGGAGAGCTGGAAGCCATATTTTTTAAACTTTGAAGACCTTTAATTTGTTTTACTATCAAAAGATTCCTTCCAAAAAGAAGTTAATTTTTGTTTTCCTTTTTGGTGAAAATTTGAAAATCTACTGCCACCTCGATTCCCTCTCCACCTCCTAATTCTATCGGCAATTTTCGAAGGAACCATTTACTACTCTCGTTCACCTCCTTCTTTTTCCTTTTATTTTCCGGTAAATCTTCTTTTTTTTCTACCTTTTTTTTAGTACATCAACATTTGGGAGTGGGGGATTCGAACAAAGGGCTCATCCTAATGTGGAGTCTATGGAATGCTAGGAACAAAACAGAGCATACAAATTTCATCCCAACAGCAGCTTTTCTTCAGAAAAGTATAGAGAGAGAGTTTAAAAAGTTGGAAGAATGTTACCTCTCAAAGTCGTCTGCGAGCAGATCTCGGAGCCAAGCGAGTCAGGGTACTTGGATAGCCCCGAAGCCAAACGCCTGGAAATTGAACTCTGATGCGGCGGGAACGAATCAAAATCTTGCGGGGGCTTAGGTTGGGTGGTCCATGACTCGAATGGATCCCTGATTTGCAGCTGTTCAAAGAGGATTAATAGAAAGTGGTCCATAAAATCGATGGAAGCCAAAGCGATTTTGGAAGGTATGCAAGCGATTTTAGATACCTGTGTGCAGCGCCAAATTCCTCTTGAGGTTGAATCTGATGCGTTAGAGATCATCAAGATCTTAAACGGAGAAGCGGTTCAGTTATCGGAGACGAAGGCGATTACGGACTCCATCCTTCACCTTGCGTCTCGGATGATTGAAGTTGACTTTCACCATTGTTACAGAGCCTTGAGTTCAGAAGACCACTGCGTTGCAAGGCGTTGTTGTAATCTAGATTTTGATTTTGCTTTTGATTCCGACCAGGCGTCTTCCCCTTTGCGGGATTCTGGGCATTTTTTTGTAGCCCCTGGTATTTTGTTGAACGGTTTTCCCTCGAATTATGAGGGTGGTTTGGTTGATGGTTAG

mRNA sequence

ATGAAGACAAAGTCTTATGATTTGAAGAAGGCAGTGTCAGGACTGACTTTTAAGGAGCCAAGATATTTTAGTTACAAACAAGAAGTCAAATACCGATTGGTGATAAAAAGGCTCATCTGGAAATCGATTTTCATCCATCTAGAGGAGACCCTCACAATAAAGCATCTAGGGCTAGGCTTGGAATGTTTGAACTCAAAAGGGCTTATGTATCTGCCCAGCTGTTCAAAGAGGATTAATAGAAAGTGGTCCATAAAATCGATGGAAGCCAAAGCGATTTTGGAAGGTATGCAAGCGATTTTAGATACCTGTGTGCAGCGCCAAATTCCTCTTGAGGTTGAATCTGATGCGTTAGAGATCATCAAGATCTTAAACGGAGAAGCGGTTCAGTTATCGGAGACGAAGGCGATTACGGACTCCATCCTTCACCTTGCGTCTCGGATGATTGAAGTTGACTTTCACCATTGTTACAGAGCCTTGAGTTCAGAAGACCACTGCGTTGCAAGGCGTTGTTGTAATCTAGATTTTGATTTTGCTTTTGATTCCGACCAGGCGTCTTCCCCTTTGCGGGATTCTGGGCATTTTTTTGTAGCCCCTGGTATTTTGTTGAACGGTTTTCCCTCGAATTATGAGGGTGGTTTGGTTGATGGTTAG

Coding sequence (CDS)

ATGAAGACAAAGTCTTATGATTTGAAGAAGGCAGTGTCAGGACTGACTTTTAAGGAGCCAAGATATTTTAGTTACAAACAAGAAGTCAAATACCGATTGGTGATAAAAAGGCTCATCTGGAAATCGATTTTCATCCATCTAGAGGAGACCCTCACAATAAAGCATCTAGGGCTAGGCTTGGAATGTTTGAACTCAAAAGGGCTTATGTATCTGCCCAGCTGTTCAAAGAGGATTAATAGAAAGTGGTCCATAAAATCGATGGAAGCCAAAGCGATTTTGGAAGGTATGCAAGCGATTTTAGATACCTGTGTGCAGCGCCAAATTCCTCTTGAGGTTGAATCTGATGCGTTAGAGATCATCAAGATCTTAAACGGAGAAGCGGTTCAGTTATCGGAGACGAAGGCGATTACGGACTCCATCCTTCACCTTGCGTCTCGGATGATTGAAGTTGACTTTCACCATTGTTACAGAGCCTTGAGTTCAGAAGACCACTGCGTTGCAAGGCGTTGTTGTAATCTAGATTTTGATTTTGCTTTTGATTCCGACCAGGCGTCTTCCCCTTTGCGGGATTCTGGGCATTTTTTTGTAGCCCCTGGTATTTTGTTGAACGGTTTTCCCTCGAATTATGAGGGTGGTTTGGTTGATGGTTAG

Protein sequence

MKTKSYDLKKAVSGLTFKEPRYFSYKQEVKYRLVIKRLIWKSIFIHLEETLTIKHLGLGLECLNSKGLMYLPSCSKRINRKWSIKSMEAKAILEGMQAILDTCVQRQIPLEVESDALEIIKILNGEAVQLSETKAITDSILHLASRMIEVDFHHCYRALSSEDHCVARRCCNLDFDFAFDSDQASSPLRDSGHFFVAPGILLNGFPSNYEGGLVDG

Homology

The following BLAST results are available for this feature:

BLAST of Spg030340 vs.


Match Name	E-value	Identity	Description

BLAST of Spg030340 vs.


Match Name	E-value	Identity	Description

BLAST of Spg030340 vs.


Match Name	E-value	Identity	Description

BLAST of Spg030340 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 58..170 e-value: 3.5E-14 score: 52.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030340.1	Spg030340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity