Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGATGGAAAAATGAGATCAAAGTTGTGCACATTGTCGCTTTTGGGACGTACGTATTTCATTTGGCCTTTTGTTAAATCCACTAAACATGTTAAGTTCAGAGCTCTTACCGGTGCTATAATGGCGTCTGGTTTTAGTTTGTGGCCTACTGATAACTCTCCAAAAGGGAGTTATTTAGGCCTTAGTTTTATAGTGTTTTGTGTGTCATTTGTGCTAAATGGGGTTGCTTTTAGATGAATATTATATGCTTTAACCCATTTGGAAGAATGGATGCTTGGAAAGTTATTTTGTGCAGAAAATATTACGGAGCGACCTGAGGGAGCAAAATCCGTGATCCAGCAAAGCAGGGAGCAAAACTGCCACGTAAGCAGTTCGTAATCCATTTTATAAAGTGGTGTTAGCTGAATTAATTACGGATCTAAAAAGCTTGGAAAGTCTGCCACGTGTCCAATTTAACCTAATTAGGTTAAACCTCACCTTATAAAAGGAGGGAGTCGTCAAAGATAAAGTCATTCACGATTGGGAGACCGAATCAATCGGCTGGAGGCCGAATTGGCGGCAGAATGGAGATTTAAGAAGACCAAGTGCGATTCCTCTCAAGAAGACGAAGTTCTTCCATGTTCTTGGTGGTTTGGAGCAGTCGTTTCATCTCCCCAATTACTAA
mRNA sequence
ATGTGGGATGGAAAAATGAGATCAAAGTTGTGCACATTGTCGCTTTTGGGACGTACGTATTTCATTTGGCCTTTTGTTAAATCCACTAAACATGTTAAGTTCAGAGCTCTTACCGGTGCTATAATGGCGTCTGGTTTTAGTTTGTGGCCTACTGATAACTCTCCAAAAGGGAGTTATTTAGGCCTTAAAAATATTACGGAGCGACCTGAGGGAGCAAAATCCGTGATCCAGCAAAGCAGGGAGCAAAACTGCCACGAGGGAGTCGTCAAAGATAAAGTCATTCACGATTGGGAGACCGAATCAATCGGCTGGAGGCCGAATTGGCGGCAGAATGGAGATTTAAGAAGACCAAGTGCGATTCCTCTCAAGAAGACGAAGTTCTTCCATGTTCTTGGTGGTTTGGAGCAGTCGTTTCATCTCCCCAATTACTAA
Coding sequence (CDS)
ATGTGGGATGGAAAAATGAGATCAAAGTTGTGCACATTGTCGCTTTTGGGACGTACGTATTTCATTTGGCCTTTTGTTAAATCCACTAAACATGTTAAGTTCAGAGCTCTTACCGGTGCTATAATGGCGTCTGGTTTTAGTTTGTGGCCTACTGATAACTCTCCAAAAGGGAGTTATTTAGGCCTTAAAAATATTACGGAGCGACCTGAGGGAGCAAAATCCGTGATCCAGCAAAGCAGGGAGCAAAACTGCCACGAGGGAGTCGTCAAAGATAAAGTCATTCACGATTGGGAGACCGAATCAATCGGCTGGAGGCCGAATTGGCGGCAGAATGGAGATTTAAGAAGACCAAGTGCGATTCCTCTCAAGAAGACGAAGTTCTTCCATGTTCTTGGTGGTTTGGAGCAGTCGTTTCATCTCCCCAATTACTAA
Protein sequence
MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPTDNSPKGSYLGLKNITERPEGAKSVIQQSREQNCHEGVVKDKVIHDWETESIGWRPNWRQNGDLRRPSAIPLKKTKFFHVLGGLEQSFHLPNY
Homology
BLAST of Spg030246 vs. NCBI nr
Match:
XP_038895025.1 (pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Benincasa hispida] >XP_038895032.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Benincasa hispida] >XP_038895041.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Benincasa hispida] >XP_038895051.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Benincasa hispida])
HSP 1 Score: 78.6 bits (192), Expect = 5.0e-11
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0
Query: 1 MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT 52
MW+G+MRSKLC LSLLGRT+F VKST+HV+ ALT A MASGFS WPT
Sbjct: 1 MWEGRMRSKLCALSLLGRTFFSRSSVKSTQHVELGALTSATMASGFSSWPT 51
BLAST of Spg030246 vs. NCBI nr
Match:
XP_011650654.1 (pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis sativus] >XP_031737512.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis sativus] >KGN56380.1 hypothetical protein Csa_009754 [Cucumis sativus])
HSP 1 Score: 77.0 bits (188), Expect = 1.4e-10
Identity = 44/99 (44.44%), Postives = 49/99 (49.49%), Query Frame = 0
Query: 6 MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSP 65
MRSKLC SLLGRTYF W VK HV RALT A MASGFSLWPT NS
Sbjct: 1 MRSKLCAFSLLGRTYFSWSSVKYAHHVNHRALTSATMASGFSLWPTRIHTVDTATVSNSN 60
Query: 66 KGSYLGL---KNITERPEGAKSVIQQSREQNCHEGVVKD 92
G L + P ++ + EQ+CH D
Sbjct: 61 VGDLFSLGFCSHSYVSPSSNHDILPATSEQSCHHAAESD 99
BLAST of Spg030246 vs. NCBI nr
Match:
XP_022979235.1 (pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 [Cucurbita maxima] >XP_022979236.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 [Cucurbita maxima] >XP_022979237.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 [Cucurbita maxima] >XP_022979238.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 [Cucurbita maxima])
HSP 1 Score: 71.2 bits (173), Expect = 7.9e-09
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0
Query: 1 MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT 52
MW+G+MRSK C LSLL T+F VKST+HV RALT A +ASGFS WPT
Sbjct: 1 MWNGRMRSKFCALSLLSNTHFSCSSVKSTQHVVRRALTSATVASGFSSWPT 51
BLAST of Spg030246 vs. NCBI nr
Match:
XP_008437826.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis melo] >XP_016898996.1 PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis melo] >KAA0048851.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK20803.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])
HSP 1 Score: 68.9 bits (167), Expect = 3.9e-08
Identity = 39/99 (39.39%), Postives = 49/99 (49.49%), Query Frame = 0
Query: 6 MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSP 65
MRSKLC SLLGRTYF W +K HV RALT MASGFS WPT NS
Sbjct: 1 MRSKLCAFSLLGRTYFSWSSIKYAHHVNLRALTSVTMASGFSSWPTRIHTVDAATVPNSN 60
Query: 66 KGSYLGLKNITERPEGAKS---VIQQSREQNCHEGVVKD 92
G++ + + S ++ + E++CH D
Sbjct: 61 IGNFFSFGFCSHSYVSSSSNHDILNATPEESCHYAADND 99
BLAST of Spg030246 vs. NCBI nr
Match:
XP_022145432.1 (pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Momordica charantia] >XP_022145440.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Momordica charantia] >XP_022145448.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Momordica charantia])
HSP 1 Score: 67.4 bits (163), Expect = 1.1e-07
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0
Query: 1 MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT 52
MWDG+MRSKL +LS+LGRTYF W VKST+ V+ ALT MAS FS PT
Sbjct: 1 MWDGRMRSKLSSLSVLGRTYFSWYSVKSTQLVELGALTSPTMASDFSSRPT 51
BLAST of Spg030246 vs. ExPASy TrEMBL
Match:
A0A0A0L308 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118150 PE=4 SV=1)
HSP 1 Score: 77.0 bits (188), Expect = 7.0e-11
Identity = 44/99 (44.44%), Postives = 49/99 (49.49%), Query Frame = 0
Query: 6 MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSP 65
MRSKLC SLLGRTYF W VK HV RALT A MASGFSLWPT NS
Sbjct: 1 MRSKLCAFSLLGRTYFSWSSVKYAHHVNHRALTSATMASGFSLWPTRIHTVDTATVSNSN 60
Query: 66 KGSYLGL---KNITERPEGAKSVIQQSREQNCHEGVVKD 92
G L + P ++ + EQ+CH D
Sbjct: 61 VGDLFSLGFCSHSYVSPSSNHDILPATSEQSCHHAAESD 99
BLAST of Spg030246 vs. ExPASy TrEMBL
Match:
A0A6J1IVL9 (pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479025 PE=4 SV=1)
HSP 1 Score: 71.2 bits (173), Expect = 3.8e-09
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0
Query: 1 MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT 52
MW+G+MRSK C LSLL T+F VKST+HV RALT A +ASGFS WPT
Sbjct: 1 MWNGRMRSKFCALSLLSNTHFSCSSVKSTQHVVRRALTSATVASGFSSWPT 51
BLAST of Spg030246 vs. ExPASy TrEMBL
Match:
A0A1S3AUX2 (pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103483141 PE=3 SV=1)
HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 39/99 (39.39%), Postives = 49/99 (49.49%), Query Frame = 0
Query: 6 MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSP 65
MRSKLC SLLGRTYF W +K HV RALT MASGFS WPT NS
Sbjct: 1 MRSKLCAFSLLGRTYFSWSSIKYAHHVNLRALTSVTMASGFSSWPTRIHTVDAATVPNSN 60
Query: 66 KGSYLGLKNITERPEGAKS---VIQQSREQNCHEGVVKD 92
G++ + + S ++ + E++CH D
Sbjct: 61 IGNFFSFGFCSHSYVSSSSNHDILNATPEESCHYAADND 99
BLAST of Spg030246 vs. ExPASy TrEMBL
Match:
A0A5D3DB84 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00640 PE=3 SV=1)
HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 39/99 (39.39%), Postives = 49/99 (49.49%), Query Frame = 0
Query: 6 MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSP 65
MRSKLC SLLGRTYF W +K HV RALT MASGFS WPT NS
Sbjct: 1 MRSKLCAFSLLGRTYFSWSSIKYAHHVNLRALTSVTMASGFSSWPTRIHTVDAATVPNSN 60
Query: 66 KGSYLGLKNITERPEGAKS---VIQQSREQNCHEGVVKD 92
G++ + + S ++ + E++CH D
Sbjct: 61 IGNFFSFGFCSHSYVSSSSNHDILNATPEESCHYAADND 99
BLAST of Spg030246 vs. ExPASy TrEMBL
Match:
A0A6J1CVY6 (pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111014876 PE=4 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 5.5e-08
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0
Query: 1 MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT 52
MWDG+MRSKL +LS+LGRTYF W VKST+ V+ ALT MAS FS PT
Sbjct: 1 MWDGRMRSKLSSLSVLGRTYFSWYSVKSTQLVELGALTSPTMASDFSSRPT 51
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038895025.1 | 5.0e-11 | 70.59 | pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Benin... | [more] |
XP_011650654.1 | 1.4e-10 | 44.44 | pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis sa... | [more] |
XP_022979235.1 | 7.9e-09 | 64.71 | pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 ... | [more] |
XP_008437826.1 | 3.9e-08 | 39.39 | PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial ... | [more] |
XP_022145432.1 | 1.1e-07 | 64.71 | pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Momor... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L308 | 7.0e-11 | 44.44 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118150 PE=4 SV=1 | [more] |
A0A6J1IVL9 | 3.8e-09 | 64.71 | pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 ... | [more] |
A0A1S3AUX2 | 1.9e-08 | 39.39 | pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Cucumis ... | [more] |
A0A5D3DB84 | 1.9e-08 | 39.39 | Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... | [more] |
A0A6J1CVY6 | 5.5e-08 | 64.71 | pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like OS=Mom... | [more] |
Match Name | E-value | Identity | Description | |