Spg030246 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030246
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpentatricopeptide repeat-containing protein At5g15010, mitochondrial
Locationscaffold6: 14978479 .. 14979145 (-)
RNA-Seq ExpressionSpg030246
SyntenySpg030246
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGATGGAAAAATGAGATCAAAGTTGTGCACATTGTCGCTTTTGGGACGTACGTATTTCATTTGGCCTTTTGTTAAATCCACTAAACATGTTAAGTTCAGAGCTCTTACCGGTGCTATAATGGCGTCTGGTTTTAGTTTGTGGCCTACTGATAACTCTCCAAAAGGGAGTTATTTAGGCCTTAGTTTTATAGTGTTTTGTGTGTCATTTGTGCTAAATGGGGTTGCTTTTAGATGAATATTATATGCTTTAACCCATTTGGAAGAATGGATGCTTGGAAAGTTATTTTGTGCAGAAAATATTACGGAGCGACCTGAGGGAGCAAAATCCGTGATCCAGCAAAGCAGGGAGCAAAACTGCCACGTAAGCAGTTCGTAATCCATTTTATAAAGTGGTGTTAGCTGAATTAATTACGGATCTAAAAAGCTTGGAAAGTCTGCCACGTGTCCAATTTAACCTAATTAGGTTAAACCTCACCTTATAAAAGGAGGGAGTCGTCAAAGATAAAGTCATTCACGATTGGGAGACCGAATCAATCGGCTGGAGGCCGAATTGGCGGCAGAATGGAGATTTAAGAAGACCAAGTGCGATTCCTCTCAAGAAGACGAAGTTCTTCCATGTTCTTGGTGGTTTGGAGCAGTCGTTTCATCTCCCCAATTACTAA

mRNA sequence

ATGTGGGATGGAAAAATGAGATCAAAGTTGTGCACATTGTCGCTTTTGGGACGTACGTATTTCATTTGGCCTTTTGTTAAATCCACTAAACATGTTAAGTTCAGAGCTCTTACCGGTGCTATAATGGCGTCTGGTTTTAGTTTGTGGCCTACTGATAACTCTCCAAAAGGGAGTTATTTAGGCCTTAAAAATATTACGGAGCGACCTGAGGGAGCAAAATCCGTGATCCAGCAAAGCAGGGAGCAAAACTGCCACGAGGGAGTCGTCAAAGATAAAGTCATTCACGATTGGGAGACCGAATCAATCGGCTGGAGGCCGAATTGGCGGCAGAATGGAGATTTAAGAAGACCAAGTGCGATTCCTCTCAAGAAGACGAAGTTCTTCCATGTTCTTGGTGGTTTGGAGCAGTCGTTTCATCTCCCCAATTACTAA

Coding sequence (CDS)

ATGTGGGATGGAAAAATGAGATCAAAGTTGTGCACATTGTCGCTTTTGGGACGTACGTATTTCATTTGGCCTTTTGTTAAATCCACTAAACATGTTAAGTTCAGAGCTCTTACCGGTGCTATAATGGCGTCTGGTTTTAGTTTGTGGCCTACTGATAACTCTCCAAAAGGGAGTTATTTAGGCCTTAAAAATATTACGGAGCGACCTGAGGGAGCAAAATCCGTGATCCAGCAAAGCAGGGAGCAAAACTGCCACGAGGGAGTCGTCAAAGATAAAGTCATTCACGATTGGGAGACCGAATCAATCGGCTGGAGGCCGAATTGGCGGCAGAATGGAGATTTAAGAAGACCAAGTGCGATTCCTCTCAAGAAGACGAAGTTCTTCCATGTTCTTGGTGGTTTGGAGCAGTCGTTTCATCTCCCCAATTACTAA

Protein sequence

MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPTDNSPKGSYLGLKNITERPEGAKSVIQQSREQNCHEGVVKDKVIHDWETESIGWRPNWRQNGDLRRPSAIPLKKTKFFHVLGGLEQSFHLPNY
Homology
[Close]
BLAST of Spg030246 vs. NCBI nr
Match: XP_038895025.1 (pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Benincasa hispida] >XP_038895032.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Benincasa hispida] >XP_038895041.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Benincasa hispida] >XP_038895051.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-11
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 1  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT 52
          MW+G+MRSKLC LSLLGRT+F    VKST+HV+  ALT A MASGFS WPT
Sbjct: 1  MWEGRMRSKLCALSLLGRTFFSRSSVKSTQHVELGALTSATMASGFSSWPT 51

[Close]
BLAST of Spg030246 vs. NCBI nr
Match: XP_011650654.1 (pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis sativus] >XP_031737512.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis sativus] >KGN56380.1 hypothetical protein Csa_009754 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-10
Identity = 44/99 (44.44%), Postives = 49/99 (49.49%), Query Frame = 0 

Query: 6  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSP 65
          MRSKLC  SLLGRTYF W  VK   HV  RALT A MASGFSLWPT           NS 
Sbjct: 1  MRSKLCAFSLLGRTYFSWSSVKYAHHVNHRALTSATMASGFSLWPTRIHTVDTATVSNSN 60

Query: 66 KGSYLGL---KNITERPEGAKSVIQQSREQNCHEGVVKD 92
           G    L    +    P     ++  + EQ+CH     D
Sbjct: 61 VGDLFSLGFCSHSYVSPSSNHDILPATSEQSCHHAAESD 99

[Close]
BLAST of Spg030246 vs. NCBI nr
Match: XP_022979235.1 (pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 [Cucurbita maxima] >XP_022979236.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 [Cucurbita maxima] >XP_022979237.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 [Cucurbita maxima] >XP_022979238.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 7.9e-09
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 1  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT 52
          MW+G+MRSK C LSLL  T+F    VKST+HV  RALT A +ASGFS WPT
Sbjct: 1  MWNGRMRSKFCALSLLSNTHFSCSSVKSTQHVVRRALTSATVASGFSSWPT 51

[Close]
BLAST of Spg030246 vs. NCBI nr
Match: XP_008437826.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis melo] >XP_016898996.1 PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis melo] >KAA0048851.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK20803.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 3.9e-08
Identity = 39/99 (39.39%), Postives = 49/99 (49.49%), Query Frame = 0 

Query: 6  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSP 65
          MRSKLC  SLLGRTYF W  +K   HV  RALT   MASGFS WPT           NS 
Sbjct: 1  MRSKLCAFSLLGRTYFSWSSIKYAHHVNLRALTSVTMASGFSSWPTRIHTVDAATVPNSN 60

Query: 66 KGSYLGLKNITERPEGAKS---VIQQSREQNCHEGVVKD 92
           G++      +     + S   ++  + E++CH     D
Sbjct: 61 IGNFFSFGFCSHSYVSSSSNHDILNATPEESCHYAADND 99

[Close]
BLAST of Spg030246 vs. NCBI nr
Match: XP_022145432.1 (pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Momordica charantia] >XP_022145440.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Momordica charantia] >XP_022145448.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-07
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 1  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT 52
          MWDG+MRSKL +LS+LGRTYF W  VKST+ V+  ALT   MAS FS  PT
Sbjct: 1  MWDGRMRSKLSSLSVLGRTYFSWYSVKSTQLVELGALTSPTMASDFSSRPT 51

[Close]
BLAST of Spg030246 vs. ExPASy TrEMBL
Match: A0A0A0L308 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118150 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-11
Identity = 44/99 (44.44%), Postives = 49/99 (49.49%), Query Frame = 0 

Query: 6  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSP 65
          MRSKLC  SLLGRTYF W  VK   HV  RALT A MASGFSLWPT           NS 
Sbjct: 1  MRSKLCAFSLLGRTYFSWSSVKYAHHVNHRALTSATMASGFSLWPTRIHTVDTATVSNSN 60

Query: 66 KGSYLGL---KNITERPEGAKSVIQQSREQNCHEGVVKD 92
           G    L    +    P     ++  + EQ+CH     D
Sbjct: 61 VGDLFSLGFCSHSYVSPSSNHDILPATSEQSCHHAAESD 99

[Close]
BLAST of Spg030246 vs. ExPASy TrEMBL
Match: A0A6J1IVL9 (pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479025 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.8e-09
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 1  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT 52
          MW+G+MRSK C LSLL  T+F    VKST+HV  RALT A +ASGFS WPT
Sbjct: 1  MWNGRMRSKFCALSLLSNTHFSCSSVKSTQHVVRRALTSATVASGFSSWPT 51

[Close]
BLAST of Spg030246 vs. ExPASy TrEMBL
Match: A0A1S3AUX2 (pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103483141 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 39/99 (39.39%), Postives = 49/99 (49.49%), Query Frame = 0 

Query: 6  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSP 65
          MRSKLC  SLLGRTYF W  +K   HV  RALT   MASGFS WPT           NS 
Sbjct: 1  MRSKLCAFSLLGRTYFSWSSIKYAHHVNLRALTSVTMASGFSSWPTRIHTVDAATVPNSN 60

Query: 66 KGSYLGLKNITERPEGAKS---VIQQSREQNCHEGVVKD 92
           G++      +     + S   ++  + E++CH     D
Sbjct: 61 IGNFFSFGFCSHSYVSSSSNHDILNATPEESCHYAADND 99

[Close]
BLAST of Spg030246 vs. ExPASy TrEMBL
Match: A0A5D3DB84 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00640 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 39/99 (39.39%), Postives = 49/99 (49.49%), Query Frame = 0 

Query: 6  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSP 65
          MRSKLC  SLLGRTYF W  +K   HV  RALT   MASGFS WPT           NS 
Sbjct: 1  MRSKLCAFSLLGRTYFSWSSIKYAHHVNLRALTSVTMASGFSSWPTRIHTVDAATVPNSN 60

Query: 66 KGSYLGLKNITERPEGAKS---VIQQSREQNCHEGVVKD 92
           G++      +     + S   ++  + E++CH     D
Sbjct: 61 IGNFFSFGFCSHSYVSSSSNHDILNATPEESCHYAADND 99

[Close]
BLAST of Spg030246 vs. ExPASy TrEMBL
Match: A0A6J1CVY6 (pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111014876 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.5e-08
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 1  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT 52
          MWDG+MRSKL +LS+LGRTYF W  VKST+ V+  ALT   MAS FS  PT
Sbjct: 1  MWDGRMRSKLSSLSVLGRTYFSWYSVKSTQLVELGALTSPTMASDFSSRPT 51

The following BLAST results are available for this feature:
BLAST of Spg030246 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038895025.15.0e-1170.59pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Benin... [more]
XP_011650654.11.4e-1044.44pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis sa... [more]
XP_022979235.17.9e-0964.71pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 ... [more]
XP_008437826.13.9e-0839.39PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial ... [more]
XP_022145432.11.1e-0764.71pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Momor... [more]
BLAST of Spg030246 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg030246 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3087.0e-1144.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118150 PE=4 SV=1[more]
A0A6J1IVL93.8e-0964.71pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 ... [more]
A0A1S3AUX21.9e-0839.39pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Cucumis ... [more]
A0A5D3DB841.9e-0839.39Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1CVY65.5e-0864.71pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like OS=Mom... [more]
BLAST of Spg030246 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030246.1Spg030246.1mRNA