Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGACATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTGAGATGCGGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATGATCAGCCACAGTGTTCTGCTTCAGTTGCTTCACTATCCATCCAACAGCTTCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCAATCGGGTATCAGCCACCAAAATTTTAGCAGTTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAACAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAATCCGAGTCAATAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGACGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTACATAAATCGTTGGAGAGCCATGAGTCTAGATTGCAAGGATCGTCTCACTGAACTCTCTGCTGTTGAGATGTGCATTCAAGGCATGCATTGGGAACTCCTCTACATTCTTCAAGGTATAAAGCCTCGCACCTTTGAAGAATTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCAAGAAAACCAAGACCTTCTACTTCCTAACTTGAAGATAGAAGAAAAGAATGCCGAAGCGACTATAGAAGAATCTATGGTTGTAAACACAACTCTTCTCAAGTCATCTTCGAAAGAAAAGCGACATGAAAATGGAACACGTCGCTTAACCTTAAAGGAAAGACAGAAGAAAATCTATCCTTTCCCTGATTCTGACATCCCTGACATGCTGGAACAACTACTGGAAGCACAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCTAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTATCGTCCTAAAGGACTTAATTCTAAAGCTAGCTATGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAGAAATTTCCACAAAAAGGAAAAAGAGAACTTTGCGACTTCCTACTGCATCGACATAGAAGAAGTTGATAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGCTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCCAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCGAAGTAACAAGCGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCCTGACCAATCCTACAAGTCAAGGATTTGATCAAGACCATGATGAGGATAAGAGCTTTTAAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGAGCAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTAAAAACAAAAAAAAAGGGTTCATGACAATACAAATTGAAGAAATTCTTTAGTACTGGGGGCAATACAACAAATTGAAGTTGTACCCCGTTATAAATATGAAGCTACGAGTTGGACGAATAAAAGAAGATTTCATTCCTCCAAATTCAACGTCTCGCTAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTTGTTCCCGCTTCTTCGAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCACTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTGTTCAAGTACGAAGGTTCACACGTTGCGCTGCTTCTTCGCTAAGTTCGAAGGTTCACACGTTGCCTGTTCCATCACCAAATTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTTCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTATTGTGCTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCTCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCCTCAAGTTCGAAGGTTCACACGTTGCGCTACTTCTTCGCCAAGTTTGA
mRNA sequence
ATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGACATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTGAGATGCGGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAGAAATTTCCACAAAAAGGAAAAAGAGAACTTTGCGACTTCCTACTGCATCGACATAGAAGAAGTTGATAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGCTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCCAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCGAAGTAACAAGCGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCACTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTGTTCAAGTACGAAGGTTCACACGTTGCGCTGCTTCTTCGCTAAGTTCGAAGGTTCACACGTTGCCTGTTCCATCACCAAATTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTTCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTATTGTGCTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCTCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCCTCAAGTTCGAAGGTTCACACGTTGCGCTACTTCTTCGCCAAGTTTGA
Coding sequence (CDS)
ATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGACATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTGAGATGCGGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAGAAATTTCCACAAAAAGGAAAAAGAGAACTTTGCGACTTCCTACTGCATCGACATAGAAGAAGTTGATAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGCTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCCAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCGAAGTAACAAGCGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCACTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTGTTCAAGTACGAAGGTTCACACGTTGCGCTGCTTCTTCGCTAAGTTCGAAGGTTCACACGTTGCCTGTTCCATCACCAAATTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTTCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTATTGTGCTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCTCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCCTCAAGTTCGAAGGTTCACACGTTGCGCTACTTCTTCGCCAAGTTTGA
Protein sequence
MRLQEDKAPIIASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMREHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQRKRSKKFSQPQQLVMLNKSFSRNFHKKEKENFATSYCIDIEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFILSSLKVLTLLHCSSFSPSSKILMRFVAVPSVQVRRFTRCAASSLSSKVHTLPVPSPNSKVLTLRCFLLQVRRFSCYARLHYCATSFFKFEGSHIVLLPSPSSKVLTLRCFLHQVRRFSRCSVSLFLLQVRRFSCASLQFLLLKFEGSHVALLLRQV
Homology
BLAST of Spg029746 vs. NCBI nr
Match:
KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 160.6 bits (405), Expect = 2.9e-35
Identity = 107/219 (48.86%), Postives = 138/219 (63.01%), Query Frame = 0
Query: 71 EEKDSQIVQLKSQIENQHIAESSQTQRK--RSKKF-------------SQPQQLVMLNKS 130
+E+ + VQ KS +H + ++K R+KK QP+Q + L +
Sbjct: 26 KERQTSSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKDEDCLQPRQSITLAEF 85
Query: 131 FSRNF---HKKEKENFATSYCIDI----------EEVDNSEKGEQRTSVFDRIKPPTTRP 190
F R+F H +E T + I EEVDNS + +QRTSVFDRIKP TTR
Sbjct: 86 FPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 145
Query: 191 SVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKM 250
SVFQR+SM EEENQC ST AR SAF+RLS+STSKK +PSTS FDRL++T+DQ +R+M
Sbjct: 146 SVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREM 205
Query: 251 DNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
+L+ K F E N+D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 206 KSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244
BLAST of Spg029746 vs. NCBI nr
Match:
TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 157.1 bits (396), Expect = 3.2e-34
Identity = 103/219 (47.03%), Postives = 140/219 (63.93%), Query Frame = 0
Query: 71 EEKDSQIVQLKSQIENQHIAESSQTQRK--RSKK-------------FSQPQQLVMLNKS 130
+E+ + VQ KS +H + ++K R+KK F QP++ + L +
Sbjct: 443 KERQTNSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKEEDFLQPRRSITLAEF 502
Query: 131 FSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKGEQRTSVFDRIKPPTTRP 190
SR+F + E T+ +++ EEVDNS + +QRTSVFDRIKP TTR
Sbjct: 503 LSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 562
Query: 191 SVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKM 250
SVFQR+SM EE+NQC ST AR SAF+RLS+STSKK +PSTS FDRL++T+DQ +R+M
Sbjct: 563 SVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREM 622
Query: 251 DNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
+L+ K F E N+D+K+H+ +PSRMKRK SV INTEGSL
Sbjct: 623 KSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661
BLAST of Spg029746 vs. NCBI nr
Match:
TYK18884.1 (gag protease polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 156.0 bits (393), Expect = 7.2e-34
Identity = 90/176 (51.14%), Postives = 123/176 (69.89%), Query Frame = 0
Query: 99 RSKKFSQPQQLVMLNKSFSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKG 158
+ K F QP++ + L + R+F + E T+ +++ EE+DNS +
Sbjct: 10 KDKDFLQPRRSITLAQFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEI 69
Query: 159 EQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPST 218
+Q+TS+FDRIKP TTR SVFQR+SM EEENQC ST AR SAF+RLS+STSKK +PST
Sbjct: 70 KQKTSIFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 129
Query: 219 SVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
S FDRL++T+DQ +R+M +L+ K F E N+D+K+HS +PSRMKRK S+ INT+GSL
Sbjct: 130 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSIDINTKGSL 185
BLAST of Spg029746 vs. NCBI nr
Match:
KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 156.0 bits (393), Expect = 7.2e-34
Identity = 92/176 (52.27%), Postives = 121/176 (68.75%), Query Frame = 0
Query: 99 RSKKFSQPQQLVMLNKSFSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKG 158
+ + F QP++ + L + R+F + E T+ +++ EEVDNS +
Sbjct: 10 KDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTSIVEVDKNYDSYEEVDNSNEI 69
Query: 159 EQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPST 218
+QRTS+FDRIKP TTR VFQR+SM EEENQC ST AR SAF+RLS+STSKK +PST
Sbjct: 70 KQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 129
Query: 219 SVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
S FDRL++T+DQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSL 185
BLAST of Spg029746 vs. NCBI nr
Match:
KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 155.6 bits (392), Expect = 9.4e-34
Identity = 92/176 (52.27%), Postives = 122/176 (69.32%), Query Frame = 0
Query: 99 RSKKFSQPQQLVMLNKSFSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKG 158
+ + F QP++ + L + R+F + E T+ +++ EEVDNS +
Sbjct: 10 KDEHFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTNIVEVDNNYDSYEEVDNSNEI 69
Query: 159 EQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPST 218
+QRTSVFDRIKP TTR VFQR+SM EEENQC +ST AR SAF+RLS+STSKK +PST
Sbjct: 70 KQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPST 129
Query: 219 SVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
S FDRL++T+DQ +R+M + + K F E N+D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 185
BLAST of Spg029746 vs. ExPASy TrEMBL
Match:
A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 1.4e-35
Identity = 107/219 (48.86%), Postives = 138/219 (63.01%), Query Frame = 0
Query: 71 EEKDSQIVQLKSQIENQHIAESSQTQRK--RSKKF-------------SQPQQLVMLNKS 130
+E+ + VQ KS +H + ++K R+KK QP+Q + L +
Sbjct: 26 KERQTSSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKDEDCLQPRQSITLAEF 85
Query: 131 FSRNF---HKKEKENFATSYCIDI----------EEVDNSEKGEQRTSVFDRIKPPTTRP 190
F R+F H +E T + I EEVDNS + +QRTSVFDRIKP TTR
Sbjct: 86 FPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 145
Query: 191 SVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKM 250
SVFQR+SM EEENQC ST AR SAF+RLS+STSKK +PSTS FDRL++T+DQ +R+M
Sbjct: 146 SVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREM 205
Query: 251 DNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
+L+ K F E N+D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 206 KSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244
BLAST of Spg029746 vs. ExPASy TrEMBL
Match:
A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)
HSP 1 Score: 157.1 bits (396), Expect = 1.6e-34
Identity = 103/219 (47.03%), Postives = 140/219 (63.93%), Query Frame = 0
Query: 71 EEKDSQIVQLKSQIENQHIAESSQTQRK--RSKK-------------FSQPQQLVMLNKS 130
+E+ + VQ KS +H + ++K R+KK F QP++ + L +
Sbjct: 443 KERQTNSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKEEDFLQPRRSITLAEF 502
Query: 131 FSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKGEQRTSVFDRIKPPTTRP 190
SR+F + E T+ +++ EEVDNS + +QRTSVFDRIKP TTR
Sbjct: 503 LSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 562
Query: 191 SVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKM 250
SVFQR+SM EE+NQC ST AR SAF+RLS+STSKK +PSTS FDRL++T+DQ +R+M
Sbjct: 563 SVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREM 622
Query: 251 DNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
+L+ K F E N+D+K+H+ +PSRMKRK SV INTEGSL
Sbjct: 623 KSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661
BLAST of Spg029746 vs. ExPASy TrEMBL
Match:
A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)
HSP 1 Score: 156.0 bits (393), Expect = 3.5e-34
Identity = 92/176 (52.27%), Postives = 121/176 (68.75%), Query Frame = 0
Query: 99 RSKKFSQPQQLVMLNKSFSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKG 158
+ + F QP++ + L + R+F + E T+ +++ EEVDNS +
Sbjct: 10 KDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTSIVEVDKNYDSYEEVDNSNEI 69
Query: 159 EQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPST 218
+QRTS+FDRIKP TTR VFQR+SM EEENQC ST AR SAF+RLS+STSKK +PST
Sbjct: 70 KQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 129
Query: 219 SVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
S FDRL++T+DQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSL 185
BLAST of Spg029746 vs. ExPASy TrEMBL
Match:
A0A5D3D5Q0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00920 PE=4 SV=1)
HSP 1 Score: 156.0 bits (393), Expect = 3.5e-34
Identity = 90/176 (51.14%), Postives = 123/176 (69.89%), Query Frame = 0
Query: 99 RSKKFSQPQQLVMLNKSFSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKG 158
+ K F QP++ + L + R+F + E T+ +++ EE+DNS +
Sbjct: 10 KDKDFLQPRRSITLAQFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEI 69
Query: 159 EQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPST 218
+Q+TS+FDRIKP TTR SVFQR+SM EEENQC ST AR SAF+RLS+STSKK +PST
Sbjct: 70 KQKTSIFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 129
Query: 219 SVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
S FDRL++T+DQ +R+M +L+ K F E N+D+K+HS +PSRMKRK S+ INT+GSL
Sbjct: 130 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSIDINTKGSL 185
BLAST of Spg029746 vs. ExPASy TrEMBL
Match:
A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 4.5e-34
Identity = 92/176 (52.27%), Postives = 122/176 (69.32%), Query Frame = 0
Query: 99 RSKKFSQPQQLVMLNKSFSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKG 158
+ + F QP++ + L + R+F + E T+ +++ EEVDNS +
Sbjct: 10 KDEHFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTNIVEVDNNYDSYEEVDNSNEI 69
Query: 159 EQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPST 218
+QRTSVFDRIKP TTR VFQR+SM EEENQC +ST AR SAF+RLS+STSKK +PST
Sbjct: 70 KQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPST 129
Query: 219 SVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
S FDRL++T+DQ +R+M + + K F E N+D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 185
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0044978.1 | 2.9e-35 | 48.86 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
TYK08944.1 | 3.2e-34 | 47.03 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
TYK18884.1 | 7.2e-34 | 51.14 | gag protease polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0050734.1 | 7.2e-34 | 52.27 | gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol... | [more] |
KAA0036008.1 | 9.4e-34 | 52.27 | Retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TQ06 | 1.4e-35 | 48.86 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5D3CCI8 | 1.6e-34 | 47.03 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5D3BBF9 | 3.5e-34 | 52.27 | Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
A0A5D3D5Q0 | 3.5e-34 | 51.14 | Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
A0A5A7SZJ7 | 4.5e-34 | 52.27 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
Match Name | E-value | Identity | Description | |