Spg029746 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg029746
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold6: 11358574 .. 11361487 (-)
RNA-Seq Expression	Spg029746
Synteny	Spg029746

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGACATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTGAGATGCGGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATGATCAGCCACAGTGTTCTGCTTCAGTTGCTTCACTATCCATCCAACAGCTTCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCAATCGGGTATCAGCCACCAAAATTTTAGCAGTTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAACAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAATCCGAGTCAATAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGACGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTACATAAATCGTTGGAGAGCCATGAGTCTAGATTGCAAGGATCGTCTCACTGAACTCTCTGCTGTTGAGATGTGCATTCAAGGCATGCATTGGGAACTCCTCTACATTCTTCAAGGTATAAAGCCTCGCACCTTTGAAGAATTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCAAGAAAACCAAGACCTTCTACTTCCTAACTTGAAGATAGAAGAAAAGAATGCCGAAGCGACTATAGAAGAATCTATGGTTGTAAACACAACTCTTCTCAAGTCATCTTCGAAAGAAAAGCGACATGAAAATGGAACACGTCGCTTAACCTTAAAGGAAAGACAGAAGAAAATCTATCCTTTCCCTGATTCTGACATCCCTGACATGCTGGAACAACTACTGGAAGCACAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCTAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTATCGTCCTAAAGGACTTAATTCTAAAGCTAGCTATGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAGAAATTTCCACAAAAAGGAAAAAGAGAACTTTGCGACTTCCTACTGCATCGACATAGAAGAAGTTGATAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGCTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCCAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCGAAGTAACAAGCGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCCTGACCAATCCTACAAGTCAAGGATTTGATCAAGACCATGATGAGGATAAGAGCTTTTAAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGAGCAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTAAAAACAAAAAAAAAGGGTTCATGACAATACAAATTGAAGAAATTCTTTAGTACTGGGGGCAATACAACAAATTGAAGTTGTACCCCGTTATAAATATGAAGCTACGAGTTGGACGAATAAAAGAAGATTTCATTCCTCCAAATTCAACGTCTCGCTAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTTGTTCCCGCTTCTTCGAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCACTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTGTTCAAGTACGAAGGTTCACACGTTGCGCTGCTTCTTCGCTAAGTTCGAAGGTTCACACGTTGCCTGTTCCATCACCAAATTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTTCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTATTGTGCTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCTCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCCTCAAGTTCGAAGGTTCACACGTTGCGCTACTTCTTCGCCAAGTTTGA

mRNA sequence

ATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGACATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTGAGATGCGGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAGAAATTTCCACAAAAAGGAAAAAGAGAACTTTGCGACTTCCTACTGCATCGACATAGAAGAAGTTGATAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGCTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCCAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCGAAGTAACAAGCGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCACTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTGTTCAAGTACGAAGGTTCACACGTTGCGCTGCTTCTTCGCTAAGTTCGAAGGTTCACACGTTGCCTGTTCCATCACCAAATTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTTCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTATTGTGCTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCTCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCCTCAAGTTCGAAGGTTCACACGTTGCGCTACTTCTTCGCCAAGTTTGA

Coding sequence (CDS)

ATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGACATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTGAGATGCGGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAGAAATTTCCACAAAAAGGAAAAAGAGAACTTTGCGACTTCCTACTGCATCGACATAGAAGAAGTTGATAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCCGCTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCCAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCGAAGTAACAAGCGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCACTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTGTTCAAGTACGAAGGTTCACACGTTGCGCTGCTTCTTCGCTAAGTTCGAAGGTTCACACGTTGCCTGTTCCATCACCAAATTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTTCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTATTGTGCTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCTCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTTCCTTCTCCTCAAGTTCGAAGGTTCACACGTTGCGCTACTTCTTCGCCAAGTTTGA

Protein sequence

MRLQEDKAPIIASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMREHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQRKRSKKFSQPQQLVMLNKSFSRNFHKKEKENFATSYCIDIEEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFILSSLKVLTLLHCSSFSPSSKILMRFVAVPSVQVRRFTRCAASSLSSKVHTLPVPSPNSKVLTLRCFLLQVRRFSCYARLHYCATSFFKFEGSHIVLLPSPSSKVLTLRCFLHQVRRFSRCSVSLFLLQVRRFSCASLQFLLLKFEGSHVALLLRQV

Homology

[Close]

BLAST of Spg029746 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 2.9e-35
Identity = 107/219 (48.86%), Postives = 138/219 (63.01%), Query Frame = 0


Query: 71  EEKDSQIVQLKSQIENQHIAESSQTQRK--RSKKF-------------SQPQQLVMLNKS 130
           +E+ +  VQ KS    +H   +   ++K  R+KK               QP+Q + L + 
Sbjct: 26  KERQTSSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKDEDCLQPRQSITLAEF 85

Query: 131 FSRNF---HKKEKENFATSYCIDI----------EEVDNSEKGEQRTSVFDRIKPPTTRP 190
           F R+F   H +E     T +   I          EEVDNS + +QRTSVFDRIKP TTR 
Sbjct: 86  FPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 145

Query: 191 SVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKM 250
           SVFQR+SM   EEENQC  ST AR SAF+RLS+STSKK +PSTS FDRL++T+DQ +R+M
Sbjct: 146 SVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREM 205

Query: 251 DNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
            +L+ K F E N+D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 206 KSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244

[Close]

BLAST of Spg029746 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 3.2e-34
Identity = 103/219 (47.03%), Postives = 140/219 (63.93%), Query Frame = 0


Query: 71  EEKDSQIVQLKSQIENQHIAESSQTQRK--RSKK-------------FSQPQQLVMLNKS 130
           +E+ +  VQ KS    +H   +   ++K  R+KK             F QP++ + L + 
Sbjct: 443 KERQTNSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKEEDFLQPRRSITLAEF 502

Query: 131 FSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKGEQRTSVFDRIKPPTTRP 190
            SR+F +   E         T+  +++       EEVDNS + +QRTSVFDRIKP TTR 
Sbjct: 503 LSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 562

Query: 191 SVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKM 250
           SVFQR+SM   EE+NQC  ST AR SAF+RLS+STSKK +PSTS FDRL++T+DQ +R+M
Sbjct: 563 SVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREM 622

Query: 251 DNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
            +L+ K F E N+D+K+H+ +PSRMKRK SV INTEGSL
Sbjct: 623 KSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

[Close]

BLAST of Spg029746 vs. NCBI nr
Match: TYK18884.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 7.2e-34
Identity = 90/176 (51.14%), Postives = 123/176 (69.89%), Query Frame = 0


Query: 99  RSKKFSQPQQLVMLNKSFSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKG 158
           + K F QP++ + L +   R+F +   E         T+  +++       EE+DNS + 
Sbjct: 10  KDKDFLQPRRSITLAQFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEI 69

Query: 159 EQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPST 218
           +Q+TS+FDRIKP TTR SVFQR+SM   EEENQC  ST AR SAF+RLS+STSKK +PST
Sbjct: 70  KQKTSIFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 129

Query: 219 SVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
           S FDRL++T+DQ +R+M +L+ K F E N+D+K+HS +PSRMKRK S+ INT+GSL
Sbjct: 130 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSIDINTKGSL 185

[Close]

BLAST of Spg029746 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 7.2e-34
Identity = 92/176 (52.27%), Postives = 121/176 (68.75%), Query Frame = 0


Query: 99  RSKKFSQPQQLVMLNKSFSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKG 158
           + + F QP++ + L +   R+F +   E         T+  +++       EEVDNS + 
Sbjct: 10  KDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTSIVEVDKNYDSYEEVDNSNEI 69

Query: 159 EQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPST 218
           +QRTS+FDRIKP TTR  VFQR+SM   EEENQC  ST AR SAF+RLS+STSKK +PST
Sbjct: 70  KQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 129

Query: 219 SVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
           S FDRL++T+DQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]

BLAST of Spg029746 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 9.4e-34
Identity = 92/176 (52.27%), Postives = 122/176 (69.32%), Query Frame = 0


Query: 99  RSKKFSQPQQLVMLNKSFSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKG 158
           + + F QP++ + L +   R+F +   E         T+  +++       EEVDNS + 
Sbjct: 10  KDEHFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTNIVEVDNNYDSYEEVDNSNEI 69

Query: 159 EQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPST 218
           +QRTSVFDRIKP TTR  VFQR+SM   EEENQC +ST AR SAF+RLS+STSKK +PST
Sbjct: 70  KQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPST 129

Query: 219 SVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
           S FDRL++T+DQ +R+M + + K F E N+D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]

BLAST of Spg029746 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-35
Identity = 107/219 (48.86%), Postives = 138/219 (63.01%), Query Frame = 0


Query: 71  EEKDSQIVQLKSQIENQHIAESSQTQRK--RSKKF-------------SQPQQLVMLNKS 130
           +E+ +  VQ KS    +H   +   ++K  R+KK               QP+Q + L + 
Sbjct: 26  KERQTSSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKDEDCLQPRQSITLAEF 85

Query: 131 FSRNF---HKKEKENFATSYCIDI----------EEVDNSEKGEQRTSVFDRIKPPTTRP 190
           F R+F   H +E     T +   I          EEVDNS + +QRTSVFDRIKP TTR 
Sbjct: 86  FPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 145

Query: 191 SVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKM 250
           SVFQR+SM   EEENQC  ST AR SAF+RLS+STSKK +PSTS FDRL++T+DQ +R+M
Sbjct: 146 SVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREM 205

Query: 251 DNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
            +L+ K F E N+D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 206 KSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244

[Close]

BLAST of Spg029746 vs. ExPASy TrEMBL
Match: A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-34
Identity = 103/219 (47.03%), Postives = 140/219 (63.93%), Query Frame = 0


Query: 71  EEKDSQIVQLKSQIENQHIAESSQTQRK--RSKK-------------FSQPQQLVMLNKS 130
           +E+ +  VQ KS    +H   +   ++K  R+KK             F QP++ + L + 
Sbjct: 443 KERQTNSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKGKEEDFLQPRRSITLAEF 502

Query: 131 FSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKGEQRTSVFDRIKPPTTRP 190
            SR+F +   E         T+  +++       EEVDNS + +QRTSVFDRIKP TTR 
Sbjct: 503 LSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRS 562

Query: 191 SVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKM 250
           SVFQR+SM   EE+NQC  ST AR SAF+RLS+STSKK +PSTS FDRL++T+DQ +R+M
Sbjct: 563 SVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREM 622

Query: 251 DNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
            +L+ K F E N+D+K+H+ +PSRMKRK SV INTEGSL
Sbjct: 623 KSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

[Close]

BLAST of Spg029746 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.5e-34
Identity = 92/176 (52.27%), Postives = 121/176 (68.75%), Query Frame = 0


Query: 99  RSKKFSQPQQLVMLNKSFSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKG 158
           + + F QP++ + L +   R+F +   E         T+  +++       EEVDNS + 
Sbjct: 10  KDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTSIVEVDKNYDSYEEVDNSNEI 69

Query: 159 EQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPST 218
           +QRTS+FDRIKP TTR  VFQR+SM   EEENQC  ST AR SAF+RLS+STSKK +PST
Sbjct: 70  KQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 129

Query: 219 SVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
           S FDRL++T+DQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSL 185

[Close]

BLAST of Spg029746 vs. ExPASy TrEMBL
Match: A0A5D3D5Q0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00920 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.5e-34
Identity = 90/176 (51.14%), Postives = 123/176 (69.89%), Query Frame = 0


Query: 99  RSKKFSQPQQLVMLNKSFSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKG 158
           + K F QP++ + L +   R+F +   E         T+  +++       EE+DNS + 
Sbjct: 10  KDKDFLQPRRSITLAQFLPRSFLEDHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEI 69

Query: 159 EQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPST 218
           +Q+TS+FDRIKP TTR SVFQR+SM   EEENQC  ST AR SAF+RLS+STSKK +PST
Sbjct: 70  KQKTSIFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 129

Query: 219 SVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
           S FDRL++T+DQ +R+M +L+ K F E N+D+K+HS +PSRMKRK S+ INT+GSL
Sbjct: 130 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSIDINTKGSL 185

[Close]

BLAST of Spg029746 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.5e-34
Identity = 92/176 (52.27%), Postives = 122/176 (69.32%), Query Frame = 0


Query: 99  RSKKFSQPQQLVMLNKSFSRNFHKKEKENFA------TSYCIDI-------EEVDNSEKG 158
           + + F QP++ + L +   R+F +   E         T+  +++       EEVDNS + 
Sbjct: 10  KDEHFLQPRRSITLAEFLPRSFLEDHPEEILEVTACHTTNIVEVDNNYDSYEEVDNSNEI 69

Query: 159 EQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPST 218
           +QRTSVFDRIKP TTR  VFQR+SM   EEENQC +ST AR SAF+RLS+STSKK +PST
Sbjct: 70  KQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPST 129

Query: 219 SVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSL 262
           S FDRL++T+DQ +R+M + + K F E N+D+K+HS +PSRMKRK SV INTEGSL
Sbjct: 130 SAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 185

The following BLAST results are available for this feature:

BLAST of Spg029746 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044978.1	2.9e-35	48.86	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK08944.1	3.2e-34	47.03	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK18884.1	7.2e-34	51.14	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050734.1	7.2e-34	52.27	gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol...	[more]
KAA0036008.1	9.4e-34	52.27	Retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg029746 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg029746 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQ06	1.4e-35	48.86	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CCI8	1.6e-34	47.03	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3BBF9	3.5e-34	52.27	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3D5Q0	3.5e-34	51.14	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SZJ7	4.5e-34	52.27	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of Spg029746 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg029746.1	Spg029746.1	mRNA