Spg029464 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg029464
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold12: 35595291 .. 35600671 (-)
RNA-Seq Expression	Spg029464
Synteny	Spg029464

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGAGATCAATGAAATTTCTGGTTGCCACGACCATTGCATTTTGCGCAAGACCATGTCATTGATGCTGACGTGGACCAATAGAATTTCGAGTAACGTGTTTGCAGCCAATGACATTGCGTTGAGCGTTGGGATGATCCTCGCCGTTGATTTGGTTTCGATTTACACGTGGAGGGATTTGATTGGAGGTGATACGTACATGATGACCCGTTTTATACTCCTTCAATCTCTCCTTGTTTTTTTCTTTTTTAAATTTTAATTTTCGGTGTTTGTGAATTGTGAAGAGGCTTCTACATAGTTCCTTCCTCCAATTAAATTGTTGGGATTAAAATAGAAAAAAGAAAATGTATGTATTTCGAATTTAAGATTTCATTAAATTGAAGTTTCAAATTGTAACCCATGAAAATACATAAATTTATCTCAATTTCACAAGTTACAAAATATATATATATACACAGACGTTGAGAATATTAGATATTGTTTTGTTCTTGATTTGAAAATTGTTTTTGAAAATAAATAATTTGGTATAAAATAATAACAAATTTTTTATTTTCACTTTATCTAAATATTTAATTATAATGAAATTATCTAAGTCCCGTTTGATAACCATTTCGTTTTTTGTTTTTTTGTTTTTTAAAATTGTGTTTGTTTTCTTTCAATCTCCTTACAATGGTTTTCATTTTTGTTAAGAAAACATTGGAGTTTCTAGCCAAATTCCAAAAAAAAAAAAAAACACAAGTTTTTGAAAACTACTTTTTTTTTTTTTTCAAATTTGGCTTGGTTTTTTAAAACATGGGAAAATGATGTAGATAAAAAACAAAGAAACTTGGAGGTAAAAATAGTGTTCAAACGGGACCTAAGTGAAGTTGTTGAAGGAGAAATTTTGACCAATCACAAATTGCCATGTCATTACACGAAATTAATGACGAAATTATAATTAATTAAATTTGGGACTAATTATAAATTGACATGTGTCCAAATTTAATTTGAAGACAAAGTTGGCCAATTAATATGATCAATTAATTAAAATTAAATTGTTTTGATCAAATTAATTAATTTGACCAATTAATTAAAAATAATACTAATTAATTGGATCAAATTTGGGTCTTTTAAATATTTGGGTCTTTTAAATATTTGGGTCATATGGTTTTGGGTCAAATAAACAAAACCCAAGACTAAATAGTTGAGCCCAAGACCAATAAAGCCCAAGTCCAAGTTGTTAGGCCCAAAAGTTACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCTCCCATTTGTGGGAGGTCAGAATTTTGAAGCTCGAAGCCAGAGTCAGAGAATTCAGAGAACTTCATCAAGATTGAAGACTGAAGACTGAAGACTCCCTGAAATCCACAAGTTTCAAAGTGCTGAACATTTCCTGAAGACTGAAGACTCCTTCAAGATTTGGAAGACTTCAAGCTCCAAGAATCTGTTGAAGCTCCAGACTCGAGATCAAGCGTTCCAGCCCTCGAGTGAAGCACATCCACACACAAGAGAGAGAATCAGAGGACAAACATTAGAGATTGTACATCCACACGCATACAAATATTAATACAAGCATATTGTTTATTCCACGTGTCTCCATCTCCGAAGTTACGTGTGAACAAATTGGCACGCCCAGTGGGACCATCTCTACCTCTCATCTCTTTCTCTTGTTTAAAGATCCAACCAACGTGATGGCACCAAAGAAAGCTCCCGCGAAGGTTACCACATCAAGTGACTCTTACACTGGTCCTATCACTCGTAGTCGTTCCCAAGGAATTGAGATCAGAGAGGATCATACTCCTCTTGCTGTTGCAAGCAGTATCTCAAAGCTGATTGAAGAATCCAATAAGGATAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATGCACTAAATCCTGATGTGATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATCTGGAGATTGCCTATTTGAAGAACCAGCTACAAAACCGAGAAACGGCTGAGTCTAGCCAGGCCCCTGGTGCAGGAAAGAATGATAAGGGGAAGGCTATCGTGCATGAGGACCAACCGCAACACTCTGCGTCGGTGGCCTCTTTGTCTGTCCAACAGCTGCAAGACATGATCATGAATTCCATCAGGGCTCAATATGGTGGACCCACTCAAAGTTCCCTCTTGTATTCTAAACCTTATACAAAGAGGATCGACAATCTCAGACTGCCCACTGGGTATCAGCCTCCCAAGTTCCAACAGTTTGATGGAAAGGGCAACCCAAAGCAGCACATCGCCCACTTTGTTGAAACCTGTGAGAACGCTGGTACTCGGGGAGATTTGCTTGTTAAGCAATTTGTCCGAACACTAAAAGGAAACGCGTTCGATTGGTACACTGACCTAGAGCCTGATACAATTGACAGCTGGGACCAGATGGAGAGAGAATTTCTGAATCGCTTCTACAGTACGAGGCGGACAGTTAGTATGACGGAACTCACGAGCACAAAGCAGCGAAAGGGTGAGCCAGTCATTGACTACATCAACCGTTGGAGAGCCTTGAGTCTCGACTGTAAAGATAGACTCTCCGAAGTGTCCTCTGTTGAGATGTGCACCCAAGGTATGCACTGGGGACTTCTTTATATCTTGCAGGGGATAAAACCCCGAACCTTTGAAGAATTAGCGACTCGTGCTCATGATATGGAGTTGAGCATCGCTAGTAGAGGGAATAAAGATCCCGTAGTCCCAGACATGAGAAAAGAAAAGAAAGAAGTCAAAGGCACTGAGAAAGTTATGAAGAGTGCCACGAAAGAGTCCATGGTCGTCAACACGACCCCTGTGAAACTTTCCGCCAAAGGAAGGGAAAACAAAACAAATAAGCGAGTAGAGACAGGCGAGGGACGCCGCCTAACTTTAAAAGAAAGACAAGAAAAAGTATATCCATTTCCAGCCTCCGACGTTCCAGATATGTTGGAACAACTGTTGGAGAAGCAGCTAATTGAGCTCCCAGAGTGCAAACGACCAGAGGAGTTAGGGAAAGTCAATGATCCTAACTATTGCAAGTATCACAGAGTCGTTAGTCACCCGGTGGAGAAGTGTTTTGTATTAAAGGAGTTAATCCTTAAATTGGCTCGCGAGAAGAGAATTGAGTTAGACCTTGATGAGGTGGCTCAGACAAATCATGCAACAATAGCGGCAAATGTAAGGAATCAACTTCCCCTAATCTCCTCATGTGATTATGAAGAAAAGTTGATTCAATTTGGGACCCTTGATCCCATAGTGGTTCGATTCCAAAAAGAAGCCACGATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAACCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCGTCCTTATTAATGCATTGATAGAGTCTGATGATACAAACATCCCAACCTCCGAGGCACGCCCATGTGCTTCGTGTTGCATGTCTATCGGATTTTCTGATGAAGATTTGTTGCTAGGGTCAAAGCCACACAATAGACCTCTATTCGTCTCAGGATATATTCGAGAACAAAGGGTTAGCCGGATCCTCATCGATGATGGATCAGCTGTCAATATAATGCCTAAGTCAACCATGAAGCAGTTAGGCATCTTAATGGAGGAACTATCAAACAGTAAGTTAGTGATCCAAGGCTTCAATCAGGGTGGACAACGGGCAATTGGCATGATACGCCTTGAACTCATCATTGGAGACTTAAAAGCTGATACTTTGTTCCATGTAATAGATTCTAAGACCACCTATAAGCTGTTGTTAGGTCGTCCTTGGATCCATGGTAATGGAGTCATAACCTCGACATTGCACCAGTGCTTCAAATTCTATCAAGATGGCATCAAGAAAGTTGAAGCTGACACCAACCCATTTTCAGAAGCTGAGTCTCATTTCGCTGATGCAAAGTTTTATCTGAAGAATGAAAACACAGGGGAAACCATACCTGCAGAAATCCCCTTGATAAAAAAGAATGATAAACTCGATTTGGAGCCTCATGCAGATGCAAGAAAAGAAGCTGTTAAAGATATGGATACTTCCGACCTGAAAAAGGGTGAAGCGTCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCCCTTATCTCGACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGGTCGGTGATGTTGAAATTTTGAAGGAAAGTTTCGCTACGCCTCTTACAAAGATCACAAGACAAGAGGTTAAGAAACCCGAAGATGATCAGATAAAAGCGATCTTGCCTGACAGACGAACTAAAGACGGGTTCGACCCCAAGGCATACAAACTTCTAGCAAAAGCAGGTTATGACTTCACAACTCACACTGAGTTTAAAAGTCTAAGGGTTTTTGATGGAAGAGCTGAGCTCTCTGCAACACAGAAGAAACTTCTAAAGAAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACTGATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACATTTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAA

mRNA sequence

AGTGAGATCAATGAAATTTCTGGTTGCCACGACCATTGCATTTTGCGCAAGACCATGTCATTGATGCTGACGTGGACCAATAGAATTTCGAGTAACGTGTTTGCAGCCAATGACATTGCGTTGAGCGTTGGGATGATCCTCGCCGTTGATTTGGTTTCGATTTACACGTGGAGGGATTTGATTGGAGGAATTGAGATCAGAGAGGATCATACTCCTCTTGCTGTTGCAAGCAGTATCTCAAAGCTGATTGAAGAATCCAATAAGGATAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATGCACTAAATCCTGATGTGATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATCTGGAGATTGCCTATTTGAAGAACCAGCTACAAAACCGAGAAACGGCTGAGTCTAGCCAGGCCCCTGAAAAGTTGATTCAATTTGGGACCCTTGATCCCATAGTGGTTCGATTCCAAAAAGAAGCCACGATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAACCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCAAGAAACTTCTAAAGAAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACTGATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACATTTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAA

Coding sequence (CDS)

AGTGAGATCAATGAAATTTCTGGTTGCCACGACCATTGCATTTTGCGCAAGACCATGTCATTGATGCTGACGTGGACCAATAGAATTTCGAGTAACGTGTTTGCAGCCAATGACATTGCGTTGAGCGTTGGGATGATCCTCGCCGTTGATTTGGTTTCGATTTACACGTGGAGGGATTTGATTGGAGGAATTGAGATCAGAGAGGATCATACTCCTCTTGCTGTTGCAAGCAGTATCTCAAAGCTGATTGAAGAATCCAATAAGGATAAGGTTGCAGTCAAAGACAACCCGCTGTTCGAATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATGCACTAAATCCTGATGTGATGTCTGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTGATGAAGGCAGTTGATGAAAGAGATCTGGAGATTGCCTATTTGAAGAACCAGCTACAAAACCGAGAAACGGCTGAGTCTAGCCAGGCCCCTGAAAAGTTGATTCAATTTGGGACCCTTGATCCCATAGTGGTTCGATTCCAAAAAGAAGCCACGATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAGAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAACCTGTCATGGAGGAAAGTGAAGATTTCTTTTGTTCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTACTAGTTCCTCGGGAACGGTGGCAGTTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTACTATCACTTCCTCAGGAAGCTAAAAGCAAGAAACTTCTAAAGAAAGGCTATAGTCTGCCTACAACAAGAAAAGGGCTCGGATATAAGTCGCCAGAGCCGGTTCGCATAACAGGAAGAGGGAAGGCAAAAGTGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAACGGAAGAAGAGAGTACACAACCTACTGATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCAGTGAGGAAGAAGAGAGTACATTTTCAACTCCGAATGTCACTCGACCTTCAGCTTTTCAAAGATTAAATGTGCCCATGAGGAAAGAAGAGAGTACATTTTCAGCTCCGGAGGTGGCTCGACCATCAGTTTTTCAAAGGTTAAGTGTTACTACGAGAAGAGACAAAAAAGAA

Protein sequence

SEINEISGCHDHCILRKTMSLMLTWTNRISSNVFAANDIALSVGMILAVDLVSIYTWRDLIGGIEIREDHTPLAVASSISKLIEESNKDKVAVKDNPLFESVVPTSKQPKDALNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQAPEKLIQFGTLDPIVVRFQKEATMKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVARPSVFQRLSVTTRRDKKE

Homology

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BLAST of Spg029464 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 9.8e-30
Identity = 84/161 (52.17%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 317  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHI 376
            +  S  I D   L   +  KKLL++G+S+P +RKGLGYKSPEP+RIT +GK KV D NHI
Sbjct: 1039 EFKSLEIHDRPEL--SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHI 1098

Query: 377  TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFR 436
            T+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ E E E  Q   S  R SVFR
Sbjct: 1099 TIEEDDNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPSLERHSVFR 1158

Query: 437  RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP 478
            RL+    +EEST      TRPSAF+RL V  +K      AP
Sbjct: 1159 RLTTTPIKEESTCHALTTTRPSAFERLGVSKKKNVQAPRAP 1197

[Close]

BLAST of Spg029464 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 8.3e-21
Identity = 73/195 (37.44%), Postives = 115/195 (58.97%), Query Frame = 0


Query: 147 ERDLEIAYLKNQLQNRETAESS------QAPEKLIQFGTLDPIVVRFQKEATMKGSQEKY 206
           E DLE     N  +    +E+S      +  + L+QFGT +PIVV+F +E + +  Q + 
Sbjct: 507 ELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDPQGEK 566

Query: 207 VSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKPVMEESE 266
             IE+++EGW +V  RKK++    ++ESR +++ +R  K+QK K KKK+ + K V  E  
Sbjct: 567 RPIEEDDEGWIVVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLVHNEDM 626

Query: 267 DFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSS 326
           +F    + +TLA++ P+ FL D Q E  E V CH ++  E++ +P  S     V  DLS 
Sbjct: 627 NFSRPQRLVTLADFLPKSFLCDHQDEDPEVVACHAINTTEEEIIPPRSLEGEGVSKDLSR 686

Query: 327 FSIKDLLSLPQEAKS 336
           F+++DLLSLPQE K+
Sbjct: 687 FNVEDLLSLPQETKT 701

HSP 2 Score: 142.5 bits (358), Expect = 9.8e-30
Identity = 84/161 (52.17%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 317 DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHI 376
           +  S  I D   L   +  KKLL++G+S+P +RKGLGYKSPEP+RIT +GK KV D NHI
Sbjct: 201 EFKSLEIHDRPEL--SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHI 260

Query: 377 TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFR 436
           T+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ E E E  Q   S  R SVFR
Sbjct: 261 TIEEDDNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPSLERHSVFR 320

Query: 437 RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP 478
           RL+    +EEST      TRPSAF+RL V  +K      AP
Sbjct: 321 RLTTTPIKEESTCHALTTTRPSAFERLGVSKKKNVQAPRAP 359

[Close]

BLAST of Spg029464 vs. NCBI nr
Match: KAA0042067.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 9.8e-30
Identity = 80/153 (52.29%), Postives = 103/153 (67.32%), Query Frame = 0


Query: 336 KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTS 395
           KKLL++G+++P +RKGLGYKSPEP+RIT +GK KV D NHITV+EVD  KEKE   QRTS
Sbjct: 847 KKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMKEKEGDGQRTS 906

Query: 396 VFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVT 455
            F RI P VAR  VF+RLS+ E E +  Q T +  R S F+RL+M S++E+        T
Sbjct: 907 AFDRISPHVARTPVFERLSMTEVERKDHQSTSNLDRRSAFQRLTMTSKKEKGICQAWMTT 966

Query: 456 RPSAFQRLNVPMRKEESTFSAPEVARPSVFQRL 489
           RPSAF+RL++  +K   T       RP +F RL
Sbjct: 967 RPSAFERLSMAKKKNVQT------PRPPIFNRL 993

[Close]

BLAST of Spg029464 vs. NCBI nr
Match: KAA0042067.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 5.6e-09
Identity = 46/113 (40.71%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 172 EKLIQFGTLDPIVVRFQKEATMKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLF 231
           E L+QFGT +P+VV+F +E   + S+EK  SIE+++EGW +V RRKK+K +  +KESR +
Sbjct: 387 ESLVQFGTFEPVVVQFHQEVAPEDSREKERSIEEDDEGWIVVTRRKKRKSTSIQKESRFY 446

Query: 232 RDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQ 285
           R+ +R  K++K K KKK+++ K   E      C     T  E  P R L++ +
Sbjct: 447 RNYRRGNKAEKNKKKKKTQKLK-FDENLGVVACHAINATEEESIPLRSLEEEE 498

HSP 2 Score: 141.4 bits (355), Expect = 2.2e-29
Identity = 83/161 (51.55%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 317 DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHI 376
           +  S  I D   L   +  KKLL++G+S+P +RKGLGYKSPEP+RIT +GK KV D NHI
Sbjct: 414 EFKSLEIHDRPEL--SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHI 473

Query: 377 TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFR 436
           T+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ E E E  Q   +  R SVFR
Sbjct: 474 TIEEDDNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPNLERHSVFR 533

Query: 437 RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP 478
           RL+    +EEST      TRPSAF+RL V  +K      AP
Sbjct: 534 RLTTTPIKEESTCHALTTTRPSAFERLGVSKKKNVQAPRAP 572

[Close]

BLAST of Spg029464 vs. NCBI nr
Match: XP_031737045.1 (uncharacterized protein LOC116402134 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 6.4e-05
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 263 FCSPQP-ITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAVPGDLSSF 322
           F  PQ  +TLA++ P+ FL   Q E  E V CH ++  E++ +P  S     V  DLS F
Sbjct: 3   FSRPQRLVTLADFLPKSFLCVHQDEDPEVVACHAINTTEEEIIPPRSLEREGVSKDLSRF 62

Query: 323 SIKDLLSLPQEAKS 336
           +++DLLSLPQE K+
Sbjct: 63  NVEDLLSLPQETKT 76

HSP 2 Score: 141.4 bits (355), Expect = 2.2e-29
Identity = 83/161 (51.55%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 317  DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHI 376
            +  S  I D   L   +  KKLL++G+S+P +RKGLGYKSPEP+RIT +GK KV D NHI
Sbjct: 1039 EFKSLEIHDRPEL--SSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHI 1098

Query: 377  TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFR 436
            T+EE D++  KE  +QR SVF RIRP VAR +VF+RLS+ E E E  Q   +  R SVFR
Sbjct: 1099 TIEEDDNTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPNLERHSVFR 1158

Query: 437  RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAP 478
            RL+    +EEST      TRPSAF+RL V  +K      AP
Sbjct: 1159 RLTTTPIKEESTCHALTTTRPSAFERLGVSKKKNVQAPRAP 1197

[Close]

BLAST of Spg029464 vs. ExPASy TrEMBL
Match: A0A5A7TJZ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003220 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.7e-30
Identity = 80/153 (52.29%), Postives = 103/153 (67.32%), Query Frame = 0


Query: 336 KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTS 395
           KKLL++G+++P +RKGLGYKSPEP+RIT +GK KV D NHITV+EVD  KEKE   QRTS
Sbjct: 847 KKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMKEKEGDGQRTS 906

Query: 396 VFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVT 455
            F RI P VAR  VF+RLS+ E E +  Q T +  R S F+RL+M S++E+        T
Sbjct: 907 AFDRISPHVARTPVFERLSMTEVERKDHQSTSNLDRRSAFQRLTMTSKKEKGICQAWMTT 966

Query: 456 RPSAFQRLNVPMRKEESTFSAPEVARPSVFQRL 489
           RPSAF+RL++  +K   T       RP +F RL
Sbjct: 967 RPSAFERLSMAKKKNVQT------PRPPIFNRL 993

[Close]

BLAST of Spg029464 vs. ExPASy TrEMBL
Match: A0A5A7TJZ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003220 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-09
Identity = 46/113 (40.71%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 172 EKLIQFGTLDPIVVRFQKEATMKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLF 231
           E L+QFGT +P+VV+F +E   + S+EK  SIE+++EGW +V RRKK+K +  +KESR +
Sbjct: 387 ESLVQFGTFEPVVVQFHQEVAPEDSREKERSIEEDDEGWIVVTRRKKRKSTSIQKESRFY 446

Query: 232 RDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQ 285
           R+ +R  K++K K KKK+++ K   E      C     T  E  P R L++ +
Sbjct: 447 RNYRRGNKAEKNKKKKKTQKLK-FDENLGVVACHAINATEEESIPLRSLEEEE 498

HSP 2 Score: 140.6 bits (353), Expect = 1.8e-29
Identity = 80/165 (48.48%), Postives = 109/165 (66.06%), Query Frame = 0


Query: 317 DLSSFSIKDLLSLPQEAKSKKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHI 376
           D  S  I +   L   +  KKLL++G+ +P +RKGLGYKSPEP+RIT +GK KV D+NHI
Sbjct: 251 DFKSLKIHEQPKL--SSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHI 310

Query: 377 TVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFR 436
           TV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ E E +  Q T +  + S F+
Sbjct: 311 TVKEVDSMEEKEGDNQRTSTFDRISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQ 370

Query: 437 RLSMPSEEEESTFSTPNVTRPSAFQRLNVPMRKEESTFSAPEVAR 482
           RL++  +EE+    T   T+PSAF+RL++  +K   T  AP + R
Sbjct: 371 RLTITFKEEKGICQTSMTTKPSAFERLSITKKKNAQTPRAPIINR 413

[Close]

BLAST of Spg029464 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-29
Identity = 76/146 (52.05%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 336 KKLLKKGYSLPTTRKGLGYKSPEPVRITGRGKAKVADTNHITVEEVDDSKEKESVDQRTS 395
           KKLL++G+ +P +RKGLGYKSPEP+RIT +GK KV D NHITV+EVD  +EKE  +QRTS
Sbjct: 294 KKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTS 353

Query: 396 VFRRIRPPVARALVFQRLSVNETEEESTQPTDSSTRPSVFRRLSMPSEEEESTFSTPNVT 455
            F RI P VARA VF+RLS+ E + +  Q T +  R S F+RL++  +EE+    T   T
Sbjct: 354 TFDRISPHVARAPVFERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFKEEKGICQTSMTT 413

Query: 456 RPSAFQRLNVPMRKEESTFSAPEVAR 482
           +PSAF+RL++  +K   T  AP + R
Sbjct: 414 KPSAFERLSITKKKNAQTPRAPIINR 439

[Close]

BLAST of Spg029464 vs. ExPASy TrEMBL
Match: A0A5D3BSG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00710 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.1e-29
Identity = 157/680 (23.09%), Postives = 228/680 (33.53%), Query Frame = 0


Query: 135 ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQAPEKLIQFGTLDPIVVRFQKEATMK 194
           E+K+ L ++ V + +   A + ++  +       +  E L+QFGT +P+VVRF +E   +
Sbjct: 57  EKKIELDLEEVAQTNHAAAMIMSEALSPRLIFEQR--ESLLQFGTFEPVVVRFHQEVAPE 116

Query: 195 GSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLFRDNKRKAKSQKKKGKKKSRRSKP 254
            SQEK   IE+++EGWT+V RRKK+K +  +KE R +R+ ++  K+QK K KKK+R+ K 
Sbjct: 117 DSQEKERLIEEDDEGWTIVTRRKKRKSTLIQKEHRFYRNYRKGNKAQKNKKKKKTRKLKL 176

Query: 255 VMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETVTCHIVDVVEDDDVPTSSSGTVAV 314
           + EE +DF  + + +TLA++FP RFL D Q E    V CH ++ +E++++P  S     V
Sbjct: 177 MHEEDKDFPQTQRLVTLADFFPTRFLGDHQDENPRVVECHAINAIEEENIPLRSLEEEGV 236

Query: 315 PGDLSSFSIKDLLSLPQEAK---------------------------------------- 374
             DLS F++ DLLSLPQE K                                        
Sbjct: 237 SKDLSRFNVNDLLSLPQETKIILINALLNSTASSSSAPTATYESTPYCMSIDFSYEDLLL 296

Query: 375 ------------------------------------------------------------ 434
                                                                       
Sbjct: 297 GSKLHNRPLYVSGYVREQRVDRILVDNGSAVNIMPKSTMRQLGILMEELSNSKLIIQGFN 356

Query: 435 ------------------------------------------------------------ 482
                                                                       
Sbjct: 357 QGSQRVIGMICLELIIGDLKTSALFHVIDSRITYKLLLGRSWIHGNGVVTSTLHQCFKFY 416

[Close]

BLAST of Spg029464 vs. ExPASy TrEMBL
Match: A0A5D3BE72 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00360 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.2e-29
Identity = 76/164 (46.34%), Postives = 109/164 (66.46%), Query Frame = 0


Query: 172 EKLIQFGTLDPIVVRFQKEATMKGSQEKYVSIEDENEGWTLVVRRKKQKQSYARKESRLF 231
           E L+QFGT +P+VV+F +E   +  QEK  SIE ++EGWT+V RRKK+K +  +KE R +
Sbjct: 68  ESLVQFGTFEPVVVQFHQEVAPEDPQEKERSIEKDDEGWTIVTRRKKRKSTLIQKEPRFY 127

Query: 232 RDNKRKAKSQKKKGKKKSRRSKPVMEESEDFFCSPQPITLAEYFPRRFLDDSQGEALETV 291
           R+ +R  K+QK K KKK+++ K + EE +DF  + + +TLA +FP RFL D Q E  E V
Sbjct: 128 RNYRRGNKTQKNKKKKKTQKLKLINEEDKDFPRTQRLVTLANFFPTRFLCDHQDENPEVV 187

Query: 292 TCHIVDVVEDDDVPTSSSGTVAVPGDLSSFSIKDLLSLPQEAKS 336
            CH +D +E++ +P  S     V  DL  F++ DLLSLPQE K+
Sbjct: 188 ACHAIDAIEEESIPLRSLEEEGVSKDLLRFNVDDLLSLPQETKT 231

The following BLAST results are available for this feature:

BLAST of Spg029464 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031735972.1	9.8e-30	52.17	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031735972.1	8.3e-21	37.44	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
KAA0042067.1	9.8e-30	52.29	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotranspos...	[more]
KAA0042067.1	5.6e-09	40.71	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK18009.1 retrotranspos...	[more]
XP_031737045.1	6.4e-05	43.24	uncharacterized protein LOC116402134 [Cucumis sativus]	[more]

Pages

BLAST of Spg029464 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg029464 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJZ7	4.7e-30	52.29	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TJZ7	2.7e-09	40.71	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UMY2	1.8e-29	52.05	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3BSG5	3.1e-29	23.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BE72	5.2e-29	46.34	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Spg029464 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 444..460
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 416..480
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..260
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 416..436

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg029464.1	Spg029464.1	mRNA