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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGGGAATGCAATACAACTTCTTTCCCACAGATTTCTACTATCCTCGTCCGTCGCCGCCATCACCGCCTAATTCCGTTCAAATCTCCGGCAATCCGCCGCCGCCTGCAGTCGTTCCTCCGCCGACCAAAACAGTTGAAGATCAAGACCCCGACCAGTCCCTCCGCAAACCCAAAACGACGTCGTCGTCGTCGATGGCTATTAACAAGAAGGTGGTTAGAGCTTCCGGCTTCCATGGCGTTTCTTCCTCCTCCCTCTTACAGACTCAAGAATTGAAATAA mRNA sequence ATGGCGGGAATGCAATACAACTTCTTTCCCACAGATTTCTACTATCCTCGTCCGTCGCCGCCATCACCGCCTAATTCCGTTCAAATCTCCGGCAATCCGCCGCCGCCTGCAGTCGTTCCTCCGCCGACCAAAACAGTTGAAGATCAAGACCCCGACCAGTCCCTCCGCAAACCCAAAACGACGTCGTCGTCGTCGATGGCTATTAACAAGAAGGTGGTTAGAGCTTCCGGCTTCCATGGCGTTTCTTCCTCCTCCCTCTTACAGACTCAAGAATTGAAATAA Coding sequence (CDS) ATGGCGGGAATGCAATACAACTTCTTTCCCACAGATTTCTACTATCCTCGTCCGTCGCCGCCATCACCGCCTAATTCCGTTCAAATCTCCGGCAATCCGCCGCCGCCTGCAGTCGTTCCTCCGCCGACCAAAACAGTTGAAGATCAAGACCCCGACCAGTCCCTCCGCAAACCCAAAACGACGTCGTCGTCGTCGATGGCTATTAACAAGAAGGTGGTTAGAGCTTCCGGCTTCCATGGCGTTTCTTCCTCCTCCCTCTTACAGACTCAAGAATTGAAATAA Protein sequence MAGMQYNFFPTDFYYPRPSPPSPPNSVQISGNPPPPAVVPPPTKTVEDQDPDQSLRKPKTTSSSSMAINKKVVRASGFHGVSSSSLLQTQELK
Homology
BLAST of Spg029041 vs. NCBI nr
Match: KAG6580888.1 (hypothetical protein SDJN03_20890, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 68.9 bits (167), Expect = 2.6e-08 Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 0
Query: 1 MAGMQYNFFPTDFYYPR--PSPPSPPNSVQISGNPPPPAVVPPPTKTVEDQDPDQSLRKP 60
MAGMQYNFFPTDFYYPR P PP PPNSV++ P +TVED+ +QS+ +P
Sbjct: 1 MAGMQYNFFPTDFYYPRPPPPPPPPPNSVKM-------LTTLPLRRTVEDEKGEQSVDEP 60
Query: 61 KTTSSSSMAINKKVVRAS 77
K S +SMA+NK VV AS
Sbjct: 61 K-ASPASMAMNKTVVGAS 70
BLAST of Spg029041 vs. NCBI nr
Match: WP_217833416.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002]) HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04 Identity = 41/64 (64.06%), Postives = 45/64 (70.31%), Query Frame = 0
Query: 17 RPSPPSPPNSVQISGNPPPPAVVPPPTKTVE-DQDPDQSLRKPKTTS---SSSMAINKKV 76
RP PSPPNSVQIS P P VVPPP KTVE D++ D SL KPK + SSSMAI+ KV
Sbjct: 1 RPPLPSPPNSVQISAEPLPSTVVPPPRKTVEDDREADWSLDKPKASPSLLSSSMAIDTKV 60
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| KAG6580888.1 | 2.6e-08 | 56.41 | hypothetical protein SDJN03_20890, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| WP_217833416.1 | 1.0e-04 | 64.06 | hypothetical protein, partial [Synechococcus sp. PCC 7002] | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 12..68 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 14..42 |
Relationships
The following mRNA feature(s) are a part of this gene:
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