Spg029041 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg029041
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold5: 16325015 .. 16325296 (-)
RNA-Seq Expression	Spg029041
Synteny	Spg029041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGAATGCAATACAACTTCTTTCCCACAGATTTCTACTATCCTCGTCCGTCGCCGCCATCACCGCCTAATTCCGTTCAAATCTCCGGCAATCCGCCGCCGCCTGCAGTCGTTCCTCCGCCGACCAAAACAGTTGAAGATCAAGACCCCGACCAGTCCCTCCGCAAACCCAAAACGACGTCGTCGTCGTCGATGGCTATTAACAAGAAGGTGGTTAGAGCTTCCGGCTTCCATGGCGTTTCTTCCTCCTCCCTCTTACAGACTCAAGAATTGAAATAA

mRNA sequence

ATGGCGGGAATGCAATACAACTTCTTTCCCACAGATTTCTACTATCCTCGTCCGTCGCCGCCATCACCGCCTAATTCCGTTCAAATCTCCGGCAATCCGCCGCCGCCTGCAGTCGTTCCTCCGCCGACCAAAACAGTTGAAGATCAAGACCCCGACCAGTCCCTCCGCAAACCCAAAACGACGTCGTCGTCGTCGATGGCTATTAACAAGAAGGTGGTTAGAGCTTCCGGCTTCCATGGCGTTTCTTCCTCCTCCCTCTTACAGACTCAAGAATTGAAATAA

Coding sequence (CDS)

ATGGCGGGAATGCAATACAACTTCTTTCCCACAGATTTCTACTATCCTCGTCCGTCGCCGCCATCACCGCCTAATTCCGTTCAAATCTCCGGCAATCCGCCGCCGCCTGCAGTCGTTCCTCCGCCGACCAAAACAGTTGAAGATCAAGACCCCGACCAGTCCCTCCGCAAACCCAAAACGACGTCGTCGTCGTCGATGGCTATTAACAAGAAGGTGGTTAGAGCTTCCGGCTTCCATGGCGTTTCTTCCTCCTCCCTCTTACAGACTCAAGAATTGAAATAA

Protein sequence

MAGMQYNFFPTDFYYPRPSPPSPPNSVQISGNPPPPAVVPPPTKTVEDQDPDQSLRKPKTTSSSSMAINKKVVRASGFHGVSSSSLLQTQELK

Homology

[Close]

BLAST of Spg029041 vs. NCBI nr
Match: KAG6580888.1 (hypothetical protein SDJN03_20890, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 2.6e-08
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 1  MAGMQYNFFPTDFYYPR--PSPPSPPNSVQISGNPPPPAVVPPPTKTVEDQDPDQSLRKP 60
          MAGMQYNFFPTDFYYPR  P PP PPNSV++           P  +TVED+  +QS+ +P
Sbjct: 1  MAGMQYNFFPTDFYYPRPPPPPPPPPNSVKM-------LTTLPLRRTVEDEKGEQSVDEP 60

Query: 61 KTTSSSSMAINKKVVRAS 77
          K  S +SMA+NK VV AS
Sbjct: 61 K-ASPASMAMNKTVVGAS 70

[Close]

BLAST of Spg029041 vs. NCBI nr
Match: WP_217833416.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 41/64 (64.06%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 17 RPSPPSPPNSVQISGNPPPPAVVPPPTKTVE-DQDPDQSLRKPKTTS---SSSMAINKKV 76
          RP  PSPPNSVQIS  P P  VVPPP KTVE D++ D SL KPK +    SSSMAI+ KV
Sbjct: 1  RPPLPSPPNSVQISAEPLPSTVVPPPRKTVEDDREADWSLDKPKASPSLLSSSMAIDTKV 60

The following BLAST results are available for this feature:

BLAST of Spg029041 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580888.1	2.6e-08	56.41	hypothetical protein SDJN03_20890, partial [Cucurbita argyrosperma subsp. sorori...	[more]
WP_217833416.1	1.0e-04	64.06	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]

BLAST of Spg029041 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg029041 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg029041 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg029041.1	Spg029041.1	mRNA