Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCTGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAATGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACGCAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACAAACCTGCGATGTTTTAAGAAAGCTTTTATCGTTGCACGTTTATGTTTAACGTCTTGGTTGAGCTACTTTATACGTTTAAAGTTTTATCACGTGTTCTGATTTCCGAATGTACAGTTTTAAATTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGTAAGGATTGGATAATTTAGTCCTAGAGGTCATGGTTTTATAAACCCCAATTGTATATGTTTTTGGTTGTGATATCTATATCAGGTTATTTTTCCAAACCGAGTTATGTCAGGGCGGCACCTCGTGTATGTTGAAAGGTTTTCAGGGATTCCGCTGTGTTGTGTTCCACATAGAATATCTTATATCTAAGATTAGTATGTTTATCAGGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGAAGGGGGTGTGACAGTTAAAATGATTGATTTTGATATAATGCTGAAGCAAAAGAAATGA
mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGAAGGGGGTGTGACAGTTAAAATGATTGATTTTGATATAATGCTGAAGCAAAAGAAATGA
Coding sequence (CDS)
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGAAGGGGGTGTGACAGTTAAAATGATTGATTTTGATATAATGCTGAAGCAAAAGAAATGA
Protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSVESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVTVKMIDFDIMLKQKK
Homology
BLAST of Spg026883 vs. NCBI nr
Match:
TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 94.7 bits (234), Expect = 4.2e-16
Identity = 56/101 (55.45%), Postives = 63/101 (62.38%), Query Frame = 0
Query: 1 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
MTEILSPRLYGTVCTQ VEIELPVPDTLPTS ESS S+SS+ +
Sbjct: 1 MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60
Query: 61 --------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGGV 75
E W++ + EDDV WLHA+FR K AGGP GGV
Sbjct: 61 LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101
BLAST of Spg026883 vs. NCBI nr
Match:
KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 94.7 bits (234), Expect = 4.2e-16
Identity = 56/101 (55.45%), Postives = 63/101 (62.38%), Query Frame = 0
Query: 1 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
MTEILSPRLYGTVCTQ VEIELPVPDTLPTS ESS S+SS+ +
Sbjct: 1 MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60
Query: 61 --------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGGV 75
E W++ + EDDV WLHA+FR K AGGP GGV
Sbjct: 61 LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101
BLAST of Spg026883 vs. NCBI nr
Match:
TYK14494.1 (uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa])
HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 50/92 (54.35%), Postives = 54/92 (58.70%), Query Frame = 0
Query: 1 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
MTEILS RLYGTVCTQ VEIELPV DTLPTS ESS S+S S
Sbjct: 1 MTEILSLRLYGTVCTQVIFSFSTLSVLHDNDAVVEIELPVADTLPTSAESSESNSRSA-- 60
Query: 61 EGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVT 76
+ DDV WLH++FR K A GP GGVT
Sbjct: 61 ----GIVRRDDVCWLHSVFRAKTASGPGGGVT 86
BLAST of Spg026883 vs. NCBI nr
Match:
TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 81.3 bits (199), Expect = 4.8e-12
Identity = 57/134 (42.54%), Postives = 67/134 (50.00%), Query Frame = 0
Query: 1 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
MTEILS RL GTVCTQ VEIELPVPDTLPTS E S+SS+ +
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345
Query: 61 --------------------------EGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVT-- 90
EG + DDV WLHA+FR K AGGPEGGVT
Sbjct: 1346 LYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVTGS 1405
BLAST of Spg026883 vs. NCBI nr
Match:
TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])
HSP 1 Score: 80.9 bits (198), Expect = 6.2e-12
Identity = 53/104 (50.96%), Postives = 59/104 (56.73%), Query Frame = 0
Query: 1 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSS---S 60
MTEILS RL+GTVCTQ VEIELPVPDTLPTS ESS S+SS +
Sbjct: 1 MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTN 60
Query: 61 TFQEGQW----VSLEE------DDVRWLHAIFRTKLAGGPEGGV 75
G +S+E DDV WLHA+FR K GGP GGV
Sbjct: 61 QVMSGLHLVFNISVESTGIVRGDDVCWLHAVFRAKTTGGPRGGV 104
BLAST of Spg026883 vs. ExPASy TrEMBL
Match:
A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)
HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 56/101 (55.45%), Postives = 63/101 (62.38%), Query Frame = 0
Query: 1 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
MTEILSPRLYGTVCTQ VEIELPVPDTLPTS ESS S+SS+ +
Sbjct: 1 MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60
Query: 61 --------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGGV 75
E W++ + EDDV WLHA+FR K AGGP GGV
Sbjct: 61 LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101
BLAST of Spg026883 vs. ExPASy TrEMBL
Match:
A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)
HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 56/101 (55.45%), Postives = 63/101 (62.38%), Query Frame = 0
Query: 1 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
MTEILSPRLYGTVCTQ VEIELPVPDTLPTS ESS S+SS+ +
Sbjct: 1 MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60
Query: 61 --------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGGV 75
E W++ + EDDV WLHA+FR K AGGP GGV
Sbjct: 61 LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101
BLAST of Spg026883 vs. ExPASy TrEMBL
Match:
A0A5D3CU23 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00050 PE=4 SV=1)
HSP 1 Score: 83.2 bits (204), Expect = 6.1e-13
Identity = 50/92 (54.35%), Postives = 54/92 (58.70%), Query Frame = 0
Query: 1 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
MTEILS RLYGTVCTQ VEIELPV DTLPTS ESS S+S S
Sbjct: 1 MTEILSLRLYGTVCTQVIFSFSTLSVLHDNDAVVEIELPVADTLPTSAESSESNSRSA-- 60
Query: 61 EGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVT 76
+ DDV WLH++FR K A GP GGVT
Sbjct: 61 ----GIVRRDDVCWLHSVFRAKTASGPGGGVT 86
BLAST of Spg026883 vs. ExPASy TrEMBL
Match:
A0A5D3CCC7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00430 PE=4 SV=1)
HSP 1 Score: 81.3 bits (199), Expect = 2.3e-12
Identity = 57/134 (42.54%), Postives = 67/134 (50.00%), Query Frame = 0
Query: 1 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
MTEILS RL GTVCTQ VEIELPVPDTLPTS E S+SS+ +
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345
Query: 61 --------------------------EGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVT-- 90
EG + DDV WLHA+FR K AGGPEGGVT
Sbjct: 1346 LYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVTGS 1405
BLAST of Spg026883 vs. ExPASy TrEMBL
Match:
A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 3.0e-12
Identity = 53/104 (50.96%), Postives = 59/104 (56.73%), Query Frame = 0
Query: 1 MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSS---S 60
MTEILS RL+GTVCTQ VEIELPVPDTLPTS ESS S+SS +
Sbjct: 1 MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTN 60
Query: 61 TFQEGQW----VSLEE------DDVRWLHAIFRTKLAGGPEGGV 75
G +S+E DDV WLHA+FR K GGP GGV
Sbjct: 61 QVMSGLHLVFNISVESTGIVRGDDVCWLHAVFRAKTTGGPRGGV 104
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK27998.1 | 4.2e-16 | 55.45 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
KAA0066851.1 | 4.2e-16 | 55.45 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
TYK14494.1 | 1.3e-12 | 54.35 | uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa] | [more] |
TYK08952.1 | 4.8e-12 | 42.54 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
TYK01041.1 | 6.2e-12 | 50.96 | uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DX39 | 2.0e-16 | 55.45 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... | [more] |
A0A5A7VMG9 | 2.0e-16 | 55.45 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... | [more] |
A0A5D3CU23 | 6.1e-13 | 54.35 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5D3CCC7 | 2.3e-12 | 42.54 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A5D3BMJ4 | 3.0e-12 | 50.96 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
Match Name | E-value | Identity | Description | |