Spg026883 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg026883
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold13: 26398340 .. 26399271 (-)
RNA-Seq Expression	Spg026883
Synteny	Spg026883

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCTGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAATGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACGCAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACAAACCTGCGATGTTTTAAGAAAGCTTTTATCGTTGCACGTTTATGTTTAACGTCTTGGTTGAGCTACTTTATACGTTTAAAGTTTTATCACGTGTTCTGATTTCCGAATGTACAGTTTTAAATTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGTAAGGATTGGATAATTTAGTCCTAGAGGTCATGGTTTTATAAACCCCAATTGTATATGTTTTTGGTTGTGATATCTATATCAGGTTATTTTTCCAAACCGAGTTATGTCAGGGCGGCACCTCGTGTATGTTGAAAGGTTTTCAGGGATTCCGCTGTGTTGTGTTCCACATAGAATATCTTATATCTAAGATTAGTATGTTTATCAGGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGAAGGGGGTGTGACAGTTAAAATGATTGATTTTGATATAATGCTGAAGCAAAAGAAATGA

mRNA sequence

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGAAGGGGGTGTGACAGTTAAAATGATTGATTTTGATATAATGCTGAAGCAAAAGAAATGA

Coding sequence (CDS)

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGAAGGGGGTGTGACAGTTAAAATGATTGATTTTGATATAATGCTGAAGCAAAAGAAATGA

Protein sequence

MTEILSPRLYGTVCTQVEIELPVPDTLPTSVESSRSSSSSTFQEGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVTVKMIDFDIMLKQKK

Homology

[Close]

BLAST of Spg026883 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 4.2e-16
Identity = 56/101 (55.45%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS S+SS+  +
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  --------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGGV 75
                   E  W++  + EDDV WLHA+FR K AGGP GGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg026883 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 4.2e-16
Identity = 56/101 (55.45%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS S+SS+  +
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  --------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGGV 75
                   E  W++  + EDDV WLHA+FR K AGGP GGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg026883 vs. NCBI nr
Match: TYK14494.1 (uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 50/92 (54.35%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
          MTEILS RLYGTVCTQ                 VEIELPV DTLPTS ESS S+S S   
Sbjct: 1  MTEILSLRLYGTVCTQVIFSFSTLSVLHDNDAVVEIELPVADTLPTSAESSESNSRSA-- 60

Query: 61 EGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVT 76
                +  DDV WLH++FR K A GP GGVT
Sbjct: 61 ----GIVRRDDVCWLHSVFRAKTASGPGGGVT 86

[Close]

BLAST of Spg026883 vs. NCBI nr
Match: TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 4.8e-12
Identity = 57/134 (42.54%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 1    MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
            MTEILS RL GTVCTQ                 VEIELPVPDTLPTS E   S+SS+  +
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345

Query: 61   --------------------------EGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVT-- 90
                                      EG    +  DDV WLHA+FR K AGGPEGGVT  
Sbjct: 1346 LYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVTGS 1405

[Close]

BLAST of Spg026883 vs. NCBI nr
Match: TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 6.2e-12
Identity = 53/104 (50.96%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSS---S 60
           MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS   +
Sbjct: 1   MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTN 60

Query: 61  TFQEGQW----VSLEE------DDVRWLHAIFRTKLAGGPEGGV 75
               G      +S+E       DDV WLHA+FR K  GGP GGV
Sbjct: 61  QVMSGLHLVFNISVESTGIVRGDDVCWLHAVFRAKTTGGPRGGV 104

[Close]

BLAST of Spg026883 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 56/101 (55.45%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS S+SS+  +
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  --------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGGV 75
                   E  W++  + EDDV WLHA+FR K AGGP GGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg026883 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-16
Identity = 56/101 (55.45%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS S+SS+  +
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  --------EGQWVS--LEEDDVRWLHAIFRTKLAGGPEGGV 75
                   E  W++  + EDDV WLHA+FR K AGGP GGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg026883 vs. ExPASy TrEMBL
Match: A0A5D3CU23 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00050 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.1e-13
Identity = 50/92 (54.35%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
          MTEILS RLYGTVCTQ                 VEIELPV DTLPTS ESS S+S S   
Sbjct: 1  MTEILSLRLYGTVCTQVIFSFSTLSVLHDNDAVVEIELPVADTLPTSAESSESNSRSA-- 60

Query: 61 EGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVT 76
                +  DDV WLH++FR K A GP GGVT
Sbjct: 61 ----GIVRRDDVCWLHSVFRAKTASGPGGGVT 86

[Close]

BLAST of Spg026883 vs. ExPASy TrEMBL
Match: A0A5D3CCC7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00430 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.3e-12
Identity = 57/134 (42.54%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 1    MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSSSTFQ 60
            MTEILS RL GTVCTQ                 VEIELPVPDTLPTS E   S+SS+  +
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345

Query: 61   --------------------------EGQWVSLEEDDVRWLHAIFRTKLAGGPEGGVT-- 90
                                      EG    +  DDV WLHA+FR K AGGPEGGVT  
Sbjct: 1346 LYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVTGS 1405

[Close]

BLAST of Spg026883 vs. ExPASy TrEMBL
Match: A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.0e-12
Identity = 53/104 (50.96%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSRSSSS---S 60
           MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS   +
Sbjct: 1   MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTN 60

Query: 61  TFQEGQW----VSLEE------DDVRWLHAIFRTKLAGGPEGGV 75
               G      +S+E       DDV WLHA+FR K  GGP GGV
Sbjct: 61  QVMSGLHLVFNISVESTGIVRGDDVCWLHAVFRAKTTGGPRGGV 104

The following BLAST results are available for this feature:

BLAST of Spg026883 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27998.1	4.2e-16	55.45	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066851.1	4.2e-16	55.45	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK14494.1	1.3e-12	54.35	uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]	[more]
TYK08952.1	4.8e-12	42.54	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK01041.1	6.2e-12	50.96	uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]	[more]

BLAST of Spg026883 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg026883 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DX39	2.0e-16	55.45	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VMG9	2.0e-16	55.45	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3CU23	6.1e-13	54.35	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CCC7	2.3e-12	42.54	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BMJ4	3.0e-12	50.96	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Spg026883 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg026883.1	Spg026883.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016740	transferase activity