Spg026876 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg026876
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	PMD domain-containing protein
Location	scaffold13: 25974541 .. 25975748 (-)
RNA-Seq Expression	Spg026876
Synteny	Spg026876

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTATTTCACTGAGCATCCTGATCCTGAGAAAAACTGCTTAGTTATCTTGAAGGATAGAGATCAACCTGTTGAAAATGGAGTCATTCTTCATGTAGGAGAGGTGGTGCATGGAAACTTTAAGACATTGCAGCCTTCCTTAGATAGTTCTAGAGTCCTATCTAGATGGTTTGAGGGGAGGCCCTTGAATCAAGAATTATCAATGAAAGTGTGGTTTCTAGAATTTCCAATACATAATAAAGCGTCGAGTCAGAATCCAGAATCAACACTAGGTCGTCAAATTATTGAGGGTAAAGCTCGCTGGAGTTCGTCGTTTAAAATCCATGGAAAATTCGGTTACATTCACAATTATTGGGAATGTTTGGAAATTGTAGTTGCTCGCAATGAGCTGACACTTAAGAAGGCTCGTTTGTTTGATGCTGTGATGGCTTCCTTATACATCTATGATCGTAATACCGATATAATTCGAGCCTTTTTTGAGGCGTGGTGTCCTTCAACAAATACTCTTCATACGTCGTCTAGAGAGTTGTCTATCTCAGTCGCAGCTGCATGCTCTCCCACAGGGTAAGGGCAGCCTGATTATTGTGCTGACGATGTGATTTCCAACTATAGGAAATAGGCTGCCCTTACCCTGTGGGAGAGCATACACCAGAAGATCATACCCACTCCCTTCGACAAAATACCTCGTCTTGAACAAGAGACAGTCAAAATACTTCATGCAATTTCTGAGACTCGTGCACCTGACTTGGATCCTCTTAAAGAAATTGTAAGTGCGTATTTCAATAAGGTAGAGAAGTATAACCAGCTGCAGTCGTCATTTTCTTCTCAATTAACTTTGGAGAGTAAGAATCGCCAATTGGAAGAGACTAAGTTTAGTTTGGAGAAGATACTATACAGTGAAAGTGAACTACTCACAGCAAAAGGTCACTTCAGCAACAACATCTACAAGCATTGCGAGAAGAAGAAGAATTGGAAGCTAGGCTTGTAGCTGTGAAAGCTAAAAGAGGTGAGATTTCTAAGTCAATTGTCGAGAAGGAGGATCTTTTAAAACAACATCAACTCGAGGATTCCAAACTGCGAGGAACTATAAGTAGTATTGAAGATGCCCCTATTCTTACTAATGCTGATGCCAAAACTTTGACGATACTTCGTGGAATGTTGGAAGATGCACAAGAAGAGCTGAAGAACTACAAGTGGATACCGTGA

mRNA sequence

ATGGTGTATTTCACTGAGCATCCTGATCCTGAGAAAAACTGCTTAGTTATCTTGAAGGATAGAGATCAACCTGTTGAAAATGGAGTCATTCTTCATGTAGGAGAGGTGGTGCATGGAAACTTTAAGACATTGCAGCCTTCCTTAGATAGTTCTAGAGTCCTATCTAGATGCATACACCAGAAGATCATACCCACTCCCTTCGACAAAATACCTCGTCTTGAACAAGAGACAGTCAAAATACTTCATGCAATTTCTGAGACTCGTGCACCTGACTTGGATCCTCTTAAAGAAATTGTAAGTGCGTATTTCAATAAGCAACAACATCTACAAGCATTGCGAGAAGAAGAAGAATTGGAAGCTAGGCTTGTAGCTGTGAAAGCTAAAAGAGGTGAGATTTCTAAGTCAATTGTCGAGAAGGAGGATCTTTTAAAACAACATCAACTCGAGGATTCCAAACTGCGAGGAACTATAAGTAGTATTGAAGATGCCCCTATTCTTACTAATGCTGATGCCAAAACTTTGACGATACTTCGTGGAATGTTGGAAGATGCACAAGAAGAGCTGAAGAACTACAAGTGGATACCGTGA

Coding sequence (CDS)

ATGGTGTATTTCACTGAGCATCCTGATCCTGAGAAAAACTGCTTAGTTATCTTGAAGGATAGAGATCAACCTGTTGAAAATGGAGTCATTCTTCATGTAGGAGAGGTGGTGCATGGAAACTTTAAGACATTGCAGCCTTCCTTAGATAGTTCTAGAGTCCTATCTAGATGCATACACCAGAAGATCATACCCACTCCCTTCGACAAAATACCTCGTCTTGAACAAGAGACAGTCAAAATACTTCATGCAATTTCTGAGACTCGTGCACCTGACTTGGATCCTCTTAAAGAAATTGTAAGTGCGTATTTCAATAAGCAACAACATCTACAAGCATTGCGAGAAGAAGAAGAATTGGAAGCTAGGCTTGTAGCTGTGAAAGCTAAAAGAGGTGAGATTTCTAAGTCAATTGTCGAGAAGGAGGATCTTTTAAAACAACATCAACTCGAGGATTCCAAACTGCGAGGAACTATAAGTAGTATTGAAGATGCCCCTATTCTTACTAATGCTGATGCCAAAACTTTGACGATACTTCGTGGAATGTTGGAAGATGCACAAGAAGAGCTGAAGAACTACAAGTGGATACCGTGA

Protein sequence

MVYFTEHPDPEKNCLVILKDRDQPVENGVILHVGEVVHGNFKTLQPSLDSSRVLSRCIHQKIIPTPFDKIPRLEQETVKILHAISETRAPDLDPLKEIVSAYFNKQQHLQALREEEELEARLVAVKAKRGEISKSIVEKEDLLKQHQLEDSKLRGTISSIEDAPILTNADAKTLTILRGMLEDAQEELKNYKWIP

Homology

[Close]

BLAST of Spg026876 vs. NCBI nr
Match: KAA0048242.1 (hypothetical protein E6C27_scaffold63G001580 [Cucumis melo var. makuwa] >TYK08015.1 hypothetical protein E5676_scaffold265G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 3.8e-14
Identity = 51/140 (36.43%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 54  LSRCIHQKIIPTPFDKIPRLEQETVKILHAISETRAPDLDPLKEIVSAYFNKQQHLQALR 113
           L + I  KI+ TPF+ I RL  E    L  I +  A  L PL+E +++Y  +++  Q   
Sbjct: 169 LQKDIQDKIMQTPFEYIVRLRPEIETFLSEIEKIHADGLTPLEEYLNSYLKRERATQLSL 228

Query: 114 EEEELEARLVAVKAKRGEISKSIVEKEDLLKQHQLEDSKLRGTISSIEDAPILTNADAKT 173
           E++ELE RL ++ A+  ++S    EK D + Q +LE  KL+  ++++E  P +T    K 
Sbjct: 229 EKKELERRLYSINAEFEQLSILSCEKVDAIDQKELEVPKLQVEVNTLEITPTITEEAIKA 288

Query: 174 LTILRGMLEDAQEELKNYKW 194
           L  +R  +E AQEE KN+KW
Sbjct: 289 LATVRRSMEVAQEEFKNFKW 308

[Close]

BLAST of Spg026876 vs. NCBI nr
Match: XP_031745312.1 (uncharacterized protein LOC116405439 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-12
Identity = 72/230 (31.30%), Postives = 107/230 (46.52%), Query Frame = 0


Query: 14   CLVILKDRDQPVENGVILHVGEVVHGNFKTLQPSL--DSSRVLSRCIHQKIIPTPFDKIP 73
            C  ++K   Q VE    + V E+ H    +L   L   ++  L   + QKII TPF+++ 
Sbjct: 771  CPPVIKGPPQKVEGTEPITVSEISHFCADSLISDLRRQAAITLWENLRQKIIRTPFERLS 830

Query: 74   RLEQETVKILHAISETRAPDLDPLKEIVSAYF-----NKQQH----LQALRE-------- 133
             LE E  KI  AI+ + + +L  L+E+V+ YF     + Q H    LQ+ ++        
Sbjct: 831  SLEPEMHKIFDAIATSGSDNLIVLRELVNGYFQGVENHNQIHSSFLLQSTKDVQLTEAKG 890

Query: 134  -----------------------------EEELEARLVAVKAKRGEISKSIVEKEDLLKQ 193
                                         E +LEA+L  V+A+  ++S  I + +  LKQ
Sbjct: 891  FVKTLRVDENRILAETNTAKRRLTRLSAKEAKLEAKLKMVRAESAKLSGIIFKNDLELKQ 950

Query: 194  HQLEDSKLRGTISSIEDAPILTNADAKTLTILRGMLEDAQEELKNYKWIP 196
             Q E SK    I  +E API+ + DAK L+ LR  LE   EELKN+KW P
Sbjct: 951  KQHEISKTCEEIDKLECAPIVGDIDAKMLSTLRESLESTLEELKNFKWTP 1000

[Close]

BLAST of Spg026876 vs. NCBI nr
Match: KAA0066958.1 (hypothetical protein E6C27_scaffold550G00980 [Cucumis melo var. makuwa] >TYK14222.1 hypothetical protein E5676_scaffold32590G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-11
Identity = 44/135 (32.59%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 58  IHQKIIPTPFDKIPRLEQETVKILHAISETRAPDLDPLKEIVSAYFNKQQHLQALREEEE 117
           I  KI+ TPF+ IPRL  E   +L  I +  A  L  L+E +++   +++  +   E +E
Sbjct: 77  IQDKIMRTPFEYIPRLRPEIAMVLSGIEKIHADGLTSLEEYLNSCLKRERTAKLSLERKE 136

Query: 118 LEARLVAVKAKRGEISKSIVEKEDLLKQHQLEDSKLRGTISSIEDAPILTNADAKTLTIL 177
           LE RL ++ A+  ++S    EK + + Q +LE +KL+  ++++E  P +T    + L  +
Sbjct: 137 LEKRLRSINAESEQLSILSCEKAEAIDQQELEIAKLQDEVNTLESTPTITEEAIEALATV 196

Query: 178 RGMLEDAQEELKNYK 193
           R  +E A+EE KN+K
Sbjct: 197 RKSMEAAREEFKNFK 211

[Close]

BLAST of Spg026876 vs. NCBI nr
Match: KAA0025724.1 (uncharacterized protein E6C27_scaffold653G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-09
Identity = 59/188 (31.38%), Postives = 86/188 (45.74%), Query Frame = 0


Query: 54  LSRCIHQKIIPTPFDKIPRLEQETVKILHAISETRAPDLDPLKEIVSAYFNKQQHLQALR 113
           LS  + QKII TPF+++  L+ E  KI  AI+ + + +L  LKE+V  YF   ++   +R
Sbjct: 206 LSESLRQKIICTPFERVSSLKPEMRKIFAAIATSDSNNLTFLKELVDGYFQGVENHNQMR 265

Query: 114 ----------------------------------------------EEEELEARLVAVKA 173
                                                         +E +LEA+L  V+ 
Sbjct: 266 SSILLQSTKDAQLMETKGFVKTLRLDENRILKETSTVQRRLARLSAKEAKLEAKLKVVRT 325

Query: 174 KRGEISKSIVEKEDLLKQHQLEDSKLRGTISSIEDAPILTNADAKTLTILRGMLEDAQEE 196
           +  ++S  I + E  LKQ Q E SK    I  ++ A I+ +ADAK L+ LR  LE+  EE
Sbjct: 326 ESTKLSGMISKNEIELKQKQREISKTCEEIDKLKCALIIGDADAKMLSALRESLENTLEE 385

[Close]

BLAST of Spg026876 vs. NCBI nr
Match: TYK06155.1 (uncharacterized protein E5676_scaffold287G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-09
Identity = 59/188 (31.38%), Postives = 85/188 (45.21%), Query Frame = 0


Query: 54  LSRCIHQKIIPTPFDKIPRLEQETVKILHAISETRAPDLDPLKEIVSAYFNKQQHLQALR 113
           LS  + QKII TPF+++  L+ E  KI  AI+ + + +L  LKE+V  YF   ++   +R
Sbjct: 241 LSESLRQKIIRTPFERVSSLKPEMRKIFAAIATSDSNNLTFLKELVDGYFQGVENHNQMR 300

Query: 114 ----------------------------------------------EEEELEARLVAVKA 173
                                                         +E +LEA+L  V+ 
Sbjct: 301 SSILLQSTKDAQLMETKGFVKTLRLDENRILKETSTVQRRLARLSAKEAKLEAKLKVVRT 360

Query: 174 KRGEISKSIVEKEDLLKQHQLEDSKLRGTISSIEDAPILTNADAKTLTILRGMLEDAQEE 196
           +  ++S  I + E  LKQ Q E SK    I  ++ A I+ +ADAK L  LR  LE+  EE
Sbjct: 361 ESTKLSGMISKNEIELKQKQREISKTCEEIDKLKCALIIGDADAKMLLALRESLENTLEE 420

[Close]

BLAST of Spg026876 vs. ExPASy TrEMBL
Match: A0A5D3C961 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001590 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14
Identity = 51/140 (36.43%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 54  LSRCIHQKIIPTPFDKIPRLEQETVKILHAISETRAPDLDPLKEIVSAYFNKQQHLQALR 113
           L + I  KI+ TPF+ I RL  E    L  I +  A  L PL+E +++Y  +++  Q   
Sbjct: 169 LQKDIQDKIMQTPFEYIVRLRPEIETFLSEIEKIHADGLTPLEEYLNSYLKRERATQLSL 228

Query: 114 EEEELEARLVAVKAKRGEISKSIVEKEDLLKQHQLEDSKLRGTISSIEDAPILTNADAKT 173
           E++ELE RL ++ A+  ++S    EK D + Q +LE  KL+  ++++E  P +T    K 
Sbjct: 229 EKKELERRLYSINAEFEQLSILSCEKVDAIDQKELEVPKLQVEVNTLEITPTITEEAIKA 288

Query: 174 LTILRGMLEDAQEELKNYKW 194
           L  +R  +E AQEE KN+KW
Sbjct: 289 LATVRRSMEVAQEEFKNFKW 308

[Close]

BLAST of Spg026876 vs. ExPASy TrEMBL
Match: A0A5D3CS52 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32590G00010 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 44/135 (32.59%), Postives = 77/135 (57.04%), Query Frame = 0


Query: 58  IHQKIIPTPFDKIPRLEQETVKILHAISETRAPDLDPLKEIVSAYFNKQQHLQALREEEE 117
           I  KI+ TPF+ IPRL  E   +L  I +  A  L  L+E +++   +++  +   E +E
Sbjct: 77  IQDKIMRTPFEYIPRLRPEIAMVLSGIEKIHADGLTSLEEYLNSCLKRERTAKLSLERKE 136

Query: 118 LEARLVAVKAKRGEISKSIVEKEDLLKQHQLEDSKLRGTISSIEDAPILTNADAKTLTIL 177
           LE RL ++ A+  ++S    EK + + Q +LE +KL+  ++++E  P +T    + L  +
Sbjct: 137 LEKRLRSINAESEQLSILSCEKAEAIDQQELEIAKLQDEVNTLESTPTITEEAIEALATV 196

Query: 178 RGMLEDAQEELKNYK 193
           R  +E A+EE KN+K
Sbjct: 197 RKSMEAAREEFKNFK 211

[Close]

BLAST of Spg026876 vs. ExPASy TrEMBL
Match: A0A2N9J4K8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59437 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.6e-10
Identity = 54/159 (33.96%), Postives = 79/159 (49.69%), Query Frame = 0


Query: 53   VLSRCIHQKIIPTPFDKIPRLEQETVKILHAISET-----RAPDLDPLKEIVSAYFN--- 112
            +L   + +KII TPFD +  L++E  KI+HAI +T     R  D   L   +  + N   
Sbjct: 1504 MLGEGLIEKIIKTPFDSVASLKEEVRKIIHAIRQTTIVDSRIRDAQMLNVAILLHSNQKL 1563

Query: 113  ---------KQQHLQALREEEELEARLVAVKAKRGEISKSIVEKEDLLKQHQLEDSKLRG 172
                     K +  + L +E EL   L  +  +RG++  SI   E+ L Q Q   S+++ 
Sbjct: 1564 LRLGIVVELKAELSKVLSKETELRKELELLATQRGKLENSISLHEEKLPQLQAAVSRIKE 1623

Query: 173  TISSIEDAPILTNADAKTLTILRGMLEDAQEELKNYKWI 195
             IS IE  P L  +D   L  LR +LE ++EELKN  WI
Sbjct: 1624 EISEIEATPTLETSDHAKLQELRELLETSREELKNLDWI 1662

[Close]

BLAST of Spg026876 vs. ExPASy TrEMBL
Match: A0A2N9GDD1 (Protein DETOXIFICATION OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25387 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.2e-10
Identity = 52/162 (32.10%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 53   VLSRCIHQKIIPTPFDKIPRLEQETVKILHAISETRAPDLDPLK---------------- 112
            +L   + +KII TPFD +  L++E  KI+HAI +T   D+ PL+                
Sbjct: 1236 MLGEGLIEKIIKTPFDSVASLKEEVKKIIHAIRQTAIVDVMPLQDRNQRRADAERCHTLA 1295

Query: 113  ---EIVSAYFN---KQQHLQALREEEELEARLVAVKAKRGEISKSIVEKEDLLKQHQLED 172
               E + A ++   + +  + L  E EL   L  +  +RG++  SI  +E+ L Q Q+  
Sbjct: 1296 LKLEAIEARYSSIAEAELSKVLSRETELRKELELLVTQRGKLENSISLQEEKLPQLQVAI 1355

Query: 173  SKLRGTISSIEDAPILTNADAKTLTILRGMLEDAQEELKNYK 193
            S+++  IS IE  P    +D   L  LR +LE +QEELKN++
Sbjct: 1356 SRIKEEISEIEVTPTFETSDLDKLQELRELLETSQEELKNFR 1397

[Close]

BLAST of Spg026876 vs. ExPASy TrEMBL
Match: A0A2N9GHR5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29928 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.2e-10
Identity = 53/159 (33.33%), Postives = 80/159 (50.31%), Query Frame = 0


Query: 53  VLSRCIHQKIIPTPFDKIPRLEQETVKILHAISET-----RAPDLDPLKEIVSAYFNKQ- 112
           +L   + +KII TPFD +  L++E  KI+HAI +T     R  D   L   +  + N++ 
Sbjct: 614 MLGEGLIEKIIKTPFDSVASLKEEVRKIIHAIRQTTIVDSRIRDAQMLNVAILLHSNQKL 673

Query: 113 -----------QHLQALREEEELEARLVAVKAKRGEISKSIVEKEDLLKQHQLEDSKLRG 172
                      +  + L +E EL   L  +  +RG++  SI   E+ L Q Q   S+++ 
Sbjct: 674 LRLGIVGRAEAELSKVLSKETELRKELELLATQRGKLENSISLHEEKLPQLQAAVSRIKE 733

Query: 173 TISSIEDAPILTNADAKTLTILRGMLEDAQEELKNYKWI 195
            IS IE  P L  +D   L  LR +LE ++EELKN  WI
Sbjct: 734 EISEIEATPTLETSDHAKLQELRELLETSREELKNLDWI 772

The following BLAST results are available for this feature:

BLAST of Spg026876 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048242.1	3.8e-14	36.43	hypothetical protein E6C27_scaffold63G001580 [Cucumis melo var. makuwa] >TYK0801...	[more]
XP_031745312.1	2.1e-12	31.30	uncharacterized protein LOC116405439 [Cucumis sativus]	[more]
KAA0066958.1	3.0e-11	32.59	hypothetical protein E6C27_scaffold550G00980 [Cucumis melo var. makuwa] >TYK1422...	[more]
KAA0025724.1	2.2e-09	31.38	uncharacterized protein E6C27_scaffold653G00030 [Cucumis melo var. makuwa]	[more]
TYK06155.1	2.8e-09	31.38	uncharacterized protein E5676_scaffold287G00030 [Cucumis melo var. makuwa]	[more]

BLAST of Spg026876 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg026876 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C961	1.9e-14	36.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CS52	1.5e-11	32.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2N9J4K8	3.6e-10	33.96	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59437 PE=4 SV=1	[more]
A0A2N9GDD1	6.2e-10	32.10	Protein DETOXIFICATION OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25387 PE=3 SV=1	[more]
A0A2N9GHR5	6.2e-10	33.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29928 PE=4 SV=1	[more]

BLAST of Spg026876 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 108..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg026876.1	Spg026876.1	mRNA