Spg026245 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg026245
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionAnkyrin repeat protein
Locationscaffold13: 14282411 .. 14285098 (-)
RNA-Seq ExpressionSpg026245
SyntenySpg026245
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAAGTCAAAAAACGGAAGAGGAGAGCAAGAGAGTAAGAGGAGAGAGTCCAGAGTTCGGGTCTCCTTCTTCAGTGGCGAAGAGGGGTATAAATATCTGCTCATGCTCCTAGGGTTTTTAGGAATTCAGAGGTGTTTCGGGACAAACAAGGCAGAATCGGGGTGGCTAGAGGCTACAGGGACCGAACGGAGTCGGAGGGACTCGGCCCGCGCAAGCGAGTCGACCATGGGCCTTGGCCTCGGCACAAGGCCGAGGCTGAGCATGGGGTCGGGCCAAAAACCCGACCCCTTCGGTCTTAGGTCGTCCCACTTGTCGGTTTCGCCTCTGGGGTCCATCGCCCAGTCTTATTTCTGCCTAGTTGTTCCCGTCAGCTCCTTGTACATCGGAGTGGTCTGAAATTACCCATAACATTAGCTTCCCGGCAACAGCTCTAAATCAGCTTCATTCCTTTTTTCTCCTACATGTGAACTCACTCAATCGGCCATGGAAGTCCAGAAGTAAGTTCCCTTTTGGATTTGTTGTTGTTCTGTTCATGTTGGATTTGAAGAGACATTTTTCTTCTTCCTCTTGCACAATTGTGATTGTGGAGTTGGGGGTATAATTTGGGTGTCAATTAGTGAAGGAACTACTGAAACATTTTTTTGAAGTATAAAGGAACTGAACCCACTTGTCATGTTCACTCAATTTGAGTTAGTACTCTAACATGAGTCAGCTATGGTCATTTTCAAGGGTTTAATAGCATTTGGGGAGTTGAGAAGGAGCCAAAAAGGAAAGGCAGGACTGACTTTTCTTTCTCTCTGCTTTAGTGCCTTCTTAATTTTTTTAGATATAGTCATTGCAGTTGCAACTGTTGTTGTCGCCCAATCACCGGTGATTTGTCCTATTTTTGGCAATTTCCAGAAAAGTGAAGCTTTGTGGAATGAAATGAAAGGGCTGCTCTAACGTTAACACTCACGCAACGGATACAAACGACAATATTTCATTTGAAATTTGAAAATATTACGAAAAAGGTTTCCCCCCTGGGCTCGTTCCAGCTGGTTTCGAAGGGGGGAACCCCCTTTTTTTTAACAGGGGAATGGTTGACCGGCGACAGAGAAGAAAAGGGAGAGAAAGAGGGAGAGAAAGAGTGAGAGAAGGAAAAAAAAAAAAGAAAAAGTCACTGTCGGCGAGTGGTGGTCACCGGCCGTCAGCTGCCGGCCATGGAGGGAAGGTCTTGTTGAAGAAGAAGAGAGAGTAGAAGGAGGAGGAGGATGAAGAAGGTGGGAGAGAGAAGAATAAAAATAAATAAAATAAATTTAAAATAATAATATTTTTATTATTTTAATATATTTTTATTTTAAAAAATTAAAAGTTAATTTCTTAATTAAAATAATAATGCCACGTCAGTAGCCGGTTAGATTTATCGGCAAAATGGATGGCAGGGACCAAATTGCTCCTTATCTCAAACCTTAGGGACTAAATTGTTGAGTTTGAAAACTCAAGGACCAAATTGAAACCTAACCCAAACCTCAGGGACTAAAAGTGTATTTTTTCCAATTTCGTATTATTAATATTAGGTACACATTAGTGACGTTTTTGTTATATTTCGCCAATTTTTCTATGATATAATGGAACTGTCGAAATTCAAAAGAAAAAAAATAGAACTGTTGATGTTGAACTGACAAACATGTTGAAATGTCGATGCAAATATCAACGTGTCGATGAACTCACTCTCCATGACCCAAATTTGGACCATTTTATAGATGTTAGGGCTTAAAATGTAGTTTTGATTTAAATCTTAATTTGCTACATAAATTTATTATATTCATTTCATTATCGTCTCAAAGTTTTCAAGCATTCGTTTTTACTCCCTTAACTTTCAACCAAATACCATTTTGATCCTTGAGGTTAACCTTTTTATAATTTATCTAATTGAAACCTAATAGTTAGCTTTGTTGATGTGTAAGGTTTGAGAAATAATAGGTATAACATTATGTGTCAAGAAAAGAAAAAACAAACAAACAAGAAGAAAAAAAATAGTTATAAAGGAATTAGAAAATTTCCCTGTTTTTTGTTCCAAAGCAAACTCATAAGAAAAAAGTATAGCACCCTTTATTGGAAAAAAAAAACTATCAACCATAATATAGTTGTCCAACTAATAACAAAGAGTTTTGGGATCCAACGATTTGTTAGAGTTTTCAAAATATAATTTTCCTATCAAACAAGTATTTATATAGGGCTTTGATCATTCAAAATTTCAAAACACCAGCACTTTCATTCTTGCTACTAATCATCCTCCGTGAAGCAAAGCTAGTGCCTACAACTTTAACACACTCGACCGCGACAATTACAAGAGGTTTTGAACTCTTTCAAATTATTTTCTTAGTGTTGGCTTGGCAGTATTGTGTGACGGTGAGTGCCACTTTCAACGATGTCACTGGTGTTCACGATCTTGGCCTCAATAAAAAAATTTCCTTTCGGGCATTTGGATCACATGGTTTAAAGATCCCGAATGTAGACATGCAGAGTCCCATAGAAGCACTGAGGATTGCACCAGTTGGACTTGAAACTCCAATGAGTTATAAAGGCCATAAAGCTTTGTCTTTTGGTCTCGAAATTCCGCAGAGCAGCAGATACCTTGATCTCAAAATTCCAAAAAGCAAGGGTGGCATTTCTACTTTTCCCACGGTGGAAAAATTAGCTTGA

mRNA sequence

ATGCTTAAGTCAAAAAACGGAAGAGGAGAGCAAGAGAGTAAGAGGAGAGAGTCCAGAGTTCGGGTCTCCTTCTTCAGTGGCGAAGAGGGGTATAAATATCTGCTCATGCTCCTAGGGTTTTTAGGAATTCAGAGGTGTTTCGGGACAAACAAGGCAGAATCGGGGTGGCTAGAGGCTACAGGGACCGAACGGAGTCGGAGGGACTCGGCCCGCGCAAGCGAGTCGACCATGGGCCTTGGCCTCGGCACAAGGCCGAGGCTGAGCATGGGGTCGGGCCAAAAACCCGACCCCTTCGGTCTTAGGTCGTCCCACTTGTCGGTTTCGCCTCTGGGGTCCATCGCCCAGTCTTATTTCTGCCTAGTTGTTCCCGTCAGCTCCTTGTACATCGGACTAGTGCCTACAACTTTAACACACTCGACCGCGACAATTACAAGAGGTTTTGAACTCTTTCAAATTATTTTCTTAGTGTTGGCTTGGCAGTATTGTGTGACGGTGAGTGCCACTTTCAACGATGTCACTGGTGTTCACGATCTTGGCCTCAATAAAAAAATTTCCTTTCGGGCATTTGGATCACATGGTTTAAAGATCCCGAATGTAGACATGCAGAGTCCCATAGAAGCACTGAGGATTGCACCAGTTGGACTTGAAACTCCAATGAGTTATAAAGGCCATAAAGCTTTGTCTTTTGGTCTCGAAATTCCGCAGAGCAGCAGATACCTTGATCTCAAAATTCCAAAAAGCAAGGGTGGCATTTCTACTTTTCCCACGGTGGAAAAATTAGCTTGA

Coding sequence (CDS)

ATGCTTAAGTCAAAAAACGGAAGAGGAGAGCAAGAGAGTAAGAGGAGAGAGTCCAGAGTTCGGGTCTCCTTCTTCAGTGGCGAAGAGGGGTATAAATATCTGCTCATGCTCCTAGGGTTTTTAGGAATTCAGAGGTGTTTCGGGACAAACAAGGCAGAATCGGGGTGGCTAGAGGCTACAGGGACCGAACGGAGTCGGAGGGACTCGGCCCGCGCAAGCGAGTCGACCATGGGCCTTGGCCTCGGCACAAGGCCGAGGCTGAGCATGGGGTCGGGCCAAAAACCCGACCCCTTCGGTCTTAGGTCGTCCCACTTGTCGGTTTCGCCTCTGGGGTCCATCGCCCAGTCTTATTTCTGCCTAGTTGTTCCCGTCAGCTCCTTGTACATCGGACTAGTGCCTACAACTTTAACACACTCGACCGCGACAATTACAAGAGGTTTTGAACTCTTTCAAATTATTTTCTTAGTGTTGGCTTGGCAGTATTGTGTGACGGTGAGTGCCACTTTCAACGATGTCACTGGTGTTCACGATCTTGGCCTCAATAAAAAAATTTCCTTTCGGGCATTTGGATCACATGGTTTAAAGATCCCGAATGTAGACATGCAGAGTCCCATAGAAGCACTGAGGATTGCACCAGTTGGACTTGAAACTCCAATGAGTTATAAAGGCCATAAAGCTTTGTCTTTTGGTCTCGAAATTCCGCAGAGCAGCAGATACCTTGATCTCAAAATTCCAAAAAGCAAGGGTGGCATTTCTACTTTTCCCACGGTGGAAAAATTAGCTTGA

Protein sequence

MLKSKNGRGEQESKRRESRVRVSFFSGEEGYKYLLMLLGFLGIQRCFGTNKAESGWLEATGTERSRRDSARASESTMGLGLGTRPRLSMGSGQKPDPFGLRSSHLSVSPLGSIAQSYFCLVVPVSSLYIGLVPTTLTHSTATITRGFELFQIIFLVLAWQYCVTVSATFNDVTGVHDLGLNKKISFRAFGSHGLKIPNVDMQSPIEALRIAPVGLETPMSYKGHKALSFGLEIPQSSRYLDLKIPKSKGGISTFPTVEKLA
Homology
[Close]
BLAST of Spg026245 vs. NCBI nr
Match: KAA0048674.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18172.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 9.1e-11
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 143 ITRGFELFQIIFLVLAWQY-CVTVSATFNDVTGVHDLGLNKKISFRAFGSHGLKIPNVD- 202
           +TRGF+LFQ + LV AW+Y C  V ATF D TGV + GLN + SFRAFG   +  PNVD 
Sbjct: 3   MTRGFKLFQTLCLVFAWKYCCAQVGATFTDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDG 62

Query: 203 -----MQSPIEA---LRIAPVGLETPMSYKGHKALSFGLEI 234
                ++  I A     IAPVGL+T ++ K  KA S+ L+I
Sbjct: 63  TITSTVKKQIRAEAPAGIAPVGLQTLIN-KEKKAQSYDLDI 102

[Close]
BLAST of Spg026245 vs. NCBI nr
Match: KAE8646352.1 (hypothetical protein Csa_015951, partial [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-10
Identity = 49/101 (48.51%), Postives = 60/101 (59.41%), Query Frame = 0 

Query: 143 ITRGFELFQIIFLVLAWQY-CVTVSATFNDVTGVHDLGLNKKISFRAFGSHGLKIPNVD- 202
           + RGF LFQ + LV AW+Y C  V ATF+D TGV + GLN + SFRAFG   +  PNVD 
Sbjct: 3   MARGFTLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPNVDG 62

Query: 203 -MQSPIE-------ALRIAPVGLETPMSYKGHKALSFGLEI 234
            + S +E          IAPVGLET M  K  K  S+ L+I
Sbjct: 63  SITSTVEKQIRAEAPAGIAPVGLET-MINKEDKVQSYDLDI 102

[Close]
BLAST of Spg026245 vs. NCBI nr
Match: XP_022146267.1 (uncharacterized protein LOC111015518 [Momordica charantia])

HSP 1 Score: 75.5 bits (184), Expect = 7.7e-10
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 0 

Query: 145 RGFELFQIIFLVLAWQYCVTVSATFNDVTGVHDLGLNKKISFRAFGSHG---LKIPNVDM 204
           RG + F  +FLV  WQ+C  V ATFND+TGV   GL++  SFRAFG HG          M
Sbjct: 5   RGSKFFHTLFLVFVWQFCGEVGATFNDITGVAKTGLHEPFSFRAFGPHGGDSQSPTEAPM 64

Query: 205 QSPIEALRIAP 213
           QSPIE  +IAP
Sbjct: 65  QSPIEKFKIAP 75

[Close]
BLAST of Spg026245 vs. NCBI nr
Match: KAA0048677.1 (Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18175.1 Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-09
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 0 

Query: 147 FELFQIIFLVLAWQY-CVTVSATFNDVTGVHDLGLNKKISFRAFGSHGLKIPNVD----- 206
           F+LFQ + LV AW+Y C  V ATF+D TGV + GLN + SFRAFG   +  PNVD     
Sbjct: 8   FKLFQTLCLVFAWKYCCAQVGATFSDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGSIIS 67

Query: 207 -MQSPIEA---LRIAPVGLETPMSYK 223
            ++  I A   + IAPVGLETP++ K
Sbjct: 68  TVKKQIRAEAPVGIAPVGLETPINKK 93

[Close]
BLAST of Spg026245 vs. NCBI nr
Match: TYK18187.1 (Ankyrin repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 3.8e-09
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 0 

Query: 144 TRGFELFQIIFLVLAWQYCVTVSATFNDVTGVHDLGLNKKISFRAFGSHGLKIPN----- 203
           T+GF+LF  +FL+ +WQ CV V ATF+DVTG+  LG+N + SF AFGS G+ + +     
Sbjct: 4   TQGFKLFHTLFLLFSWQCCVKVGATFHDVTGILGLGINHRYSFHAFGSSGVGMFSNTVGS 63

Query: 204 -----VDMQSPIEA--LRIAPVGLETPMSYK 223
                VD++SP +A    I P G E  ++ K
Sbjct: 64  RASSVVDIESPAQAPTSEIVPAGPEIDLATK 94

[Close]
BLAST of Spg026245 vs. ExPASy TrEMBL
Match: A0A0A0K5J0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.7e-16
Identity = 53/98 (54.08%), Postives = 65/98 (66.33%), Query Frame = 0 

Query: 143 ITRGFELFQIIFLVLAWQYCVTVSATFNDVTGVHDLGLNKKISFRAFGSHGLKIPNVD-- 202
           + RGF+LFQ +FLV AWQ+CV V ATFNDVTGV +L LN   SFR FG   +  PN D  
Sbjct: 1   MARGFKLFQTLFLVFAWQHCVKVDATFNDVTGVVNLDLNHHFSFRGFGWPRIGTPNTDGS 60

Query: 203 ----MQSPIEA-LRIAPVGLETPMSYKGHKALSFGLEI 234
               + +  EA   IAPVGL+TP++ KG K  +FGLEI
Sbjct: 61  LASTVNNHAEAPTGIAPVGLDTPIN-KGDKVSTFGLEI 97

[Close]
BLAST of Spg026245 vs. ExPASy TrEMBL
Match: A0A5A7U057 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001040 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.4e-11
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 143 ITRGFELFQIIFLVLAWQY-CVTVSATFNDVTGVHDLGLNKKISFRAFGSHGLKIPNVD- 202
           +TRGF+LFQ + LV AW+Y C  V ATF D TGV + GLN + SFRAFG   +  PNVD 
Sbjct: 3   MTRGFKLFQTLCLVFAWKYCCAQVGATFTDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDG 62

Query: 203 -----MQSPIEA---LRIAPVGLETPMSYKGHKALSFGLEI 234
                ++  I A     IAPVGL+T ++ K  KA S+ L+I
Sbjct: 63  TITSTVKKQIRAEAPAGIAPVGLQTLIN-KEKKAQSYDLDI 102

[Close]
BLAST of Spg026245 vs. ExPASy TrEMBL
Match: A0A0A0K7W7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.7e-10
Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 0 

Query: 143 ITRGFELFQIIFLVLAWQY-CVTVSATFNDVTGVHDLGLNKKISFRAFGSHGLKIPNVD- 202
           + RGF+LFQ + LV AW+Y C  V ATF+D TGV + GLN + SFRAFG   +  P+VD 
Sbjct: 3   MARGFKLFQTLCLVFAWKYCCAQVGATFSDATGVVNAGLNHQFSFRAFGWPHIGTPDVDG 62

Query: 203 -----MQSPIEA---LRIAPVGLETPMSYKGHKALSFGLEI 234
                ++  I A     IAPVGLET M  K  K  S+ L+I
Sbjct: 63  SITSTVKKQIHAEAPAGIAPVGLET-MINKEDKVQSYDLDI 102

[Close]
BLAST of Spg026245 vs. ExPASy TrEMBL
Match: A0A6J1CZ48 (uncharacterized protein LOC111015518 OS=Momordica charantia OX=3673 GN=LOC111015518 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.7e-10
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 0 

Query: 145 RGFELFQIIFLVLAWQYCVTVSATFNDVTGVHDLGLNKKISFRAFGSHG---LKIPNVDM 204
           RG + F  +FLV  WQ+C  V ATFND+TGV   GL++  SFRAFG HG          M
Sbjct: 5   RGSKFFHTLFLVFVWQFCGEVGATFNDITGVAKTGLHEPFSFRAFGPHGGDSQSPTEAPM 64

Query: 205 QSPIEALRIAP 213
           QSPIE  +IAP
Sbjct: 65  QSPIEKFKIAP 75

[Close]
BLAST of Spg026245 vs. ExPASy TrEMBL
Match: A0A5A7U318 (Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001070 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-09
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 0 

Query: 147 FELFQIIFLVLAWQY-CVTVSATFNDVTGVHDLGLNKKISFRAFGSHGLKIPNVD----- 206
           F+LFQ + LV AW+Y C  V ATF+D TGV + GLN + SFRAFG   +  PNVD     
Sbjct: 8   FKLFQTLCLVFAWKYCCAQVGATFSDTTGVVNAGLNHQFSFRAFGWPHIGTPNVDGSIIS 67

Query: 207 -MQSPIEA---LRIAPVGLETPMSYK 223
            ++  I A   + IAPVGLETP++ K
Sbjct: 68  TVKKQIRAEAPVGIAPVGLETPINKK 93

The following BLAST results are available for this feature:
BLAST of Spg026245 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048674.19.1e-1148.51Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18172.1 Ankyrin repeat pro... [more]
KAE8646352.12.6e-1048.51hypothetical protein Csa_015951, partial [Cucumis sativus][more]
XP_022146267.17.7e-1052.11uncharacterized protein LOC111015518 [Momordica charantia][more]
KAA0048677.12.9e-0950.00Ankyrin repeat protein [Cucumis melo var. makuwa] >TYK18175.1 Ankyrin repeat pro... [more]
TYK18187.13.8e-0942.86Ankyrin repeat protein [Cucumis melo var. makuwa][more]
BLAST of Spg026245 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg026245 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5J07.7e-1654.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398750 PE=4 SV=1[more]
A0A5A7U0574.4e-1148.51Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4... [more]
A0A0A0K7W73.7e-1047.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G399280 PE=4 SV=1[more]
A0A6J1CZ483.7e-1052.11uncharacterized protein LOC111015518 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A5A7U3181.4e-0950.00Ankyrin repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4... [more]
BLAST of Spg026245 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg026245.1Spg026245.1mRNA