Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGGGAACCGAAGCCGAGGAGAAGAGGTTGACGCCAAAGTTACTGCCCTAGAGGATAAGGTGAGTGGAATGGTTTGAAGTTTGTCTAGGATACTTCGTATCTTGGATAAACCTGGTCCTAGCACCAAAATCCATGGGGAAGAATTGATTAGAGATCCAAGGAAGGGGAATGAGCCAATCGAATACGTTGAAGAGTCGGAGACAAGATTGAAGGGAAAGAAGACCAACAGCGCGACCAGCAAGGTCGGGGGGCTGAAACCTACGGAACGCACGATTTTGAGGAGCCCAGAACCAAGTATCAGTCGTAGAACAGACTTGAGGAACTTGATTGAGGAAAAGCACAGAATGGCCAAAGTTGCTGAGGTCGAGGCTAAGGCTGTCGAGGCCTAGGCTAGAGCTGCCAAGGCCTAGGTTAGGGCAGTCGAGGCCGAGGCTAGAGTGGCCGAGGCCGAGGCCAAGAGGGACAATCTCCCTTGGAAGACCGAGCTTCTAAACACCCTAAAGGAGCTCGGAAGTTCCCAAGGGGACCTGCAGAAATCAAAGGATTCTGGAGAACAAAACTTAGAAGAACTAATCGACCAGGTTGACCCATCCTTCACTGATGAAGTCATGAAAGCCGAGGTGTCCCAGAAGTTCAAGGTACCTACATTTAAACCGTATGATGGCAAGAAGGACCCCGTACAACACCTAGACGCCTACAGAAACTGGATGGACTTCCATGACGTTTCAGATGCAATCAGGTGTCGTGCTTTCTCTTTCACTCTAACAAGACCAGCCAAGCAATGTTTCAGACGTTGAAAAGAAGATCCATAAGCTCTTTCAAAGAATTAGCACGAGCATTCCTCTCGTAGTTCATGGGAGCCAGAGAACAATGCAAGCCTCACATCAACCTACTAATGTCAAACAACAGCCATGTGAGAGTTTGTGTGATTATATAACACGTTTTAACGAAGAAGCACTACAGGTTGAGGGGTACAGTGAATGAATAGCCCTAGTAGCCATAACAACAGGACTGGAAGACGAGAGATTGCTTAATTCAATATGTAAGAGCCAACCTCGAACTTATGTTGAATTTGTTTCCAGAGCCCAGAAGTACATGAGTGCAAAGGAGTTGCTTAGATCGAAGAGGTTAGAACACAAGAGGTATTCTTCATTCGACAGAGGACAGACGAGGTTGGTCGCGTCCGAGCCGACCAGACCGAAGAGACTACACAAGAAAGTTTGAAAAGTACACCCTTACCTCACTCCCACAGGAGAAAATCTTAATGGAAATTCGGAATACGAACCTCTTTAATGTACCAAGAAAGCTGAAGTCAAATCTTGACAAAAGAGACAAAGGTCAGTATTGTCTCTTCCATCGAGATCATGGGCATTCAACTAGGAACTGCAATCAACTGAAGGACGAAATTGAAGCACTAATTCGGAACAGGTACCTGAAGAAGTTCACCACTAAGGCCAAGGCGGTCAGAAATGGTCAAGGCAAAGATGATGATAGACCCCTTCTGGAAATCCGTTGA
mRNA sequence
ATGCCAGGGAACCGAAGCCGAGGAGAAGAGGTTGACGCCAAAGTTACTGCCCTAGAGGATAAGGTTAGGGCAGTCGAGGCCGAGGCTAGAGTGGCCGAGGCCGAGGCCAAGAGGGACAATCTCCCTTGGAAGACCGAGCTTCTAAACACCCTAAAGGAGCTCGGAAGTTCCCAAGGGGACCTGCAGAAATCAAAGGATTCTGGAGAACAAAACTTAGAAGAACTAATCGACCAGGTTGACCCATCCTTCACTGATGAAGTCATGAAAGCCGAGGTGTCCCAGAAGTTCAAGGTACCTACATTTAAACCGTATGATGGCAAGAAGGACCCCGTACAACACCTAGACGCCTACAGAAACTGGATGGACTTCCATGACGTTTCAGATGCAATCAGGTGTCAGGACAGACGAGGTTGGTCGCGTCCGAGCCGACCAGACCGAAGAGACTACACAAGAAAGTTTGAAAAGTACACCCTTACCTCACTCCCACAGGAGAAAATCTTAATGGAAATTCGGAATACGAACCTCTTTAATGTACCAAGAAAGCTGAAGTCAAATCTTGACAAAAGAGACAAAGGTCAGTATTGTCTCTTCCATCGAGATCATGGGCATTCAACTAGGAACTGCAATCAACTGAAGGACGAAATTGAAGCACTAATTCGGAACAGGTACCTGAAGAAGTTCACCACTAAGGCCAAGGCGGTCAGAAATGGTCAAGGCAAAGATGATGATAGACCCCTTCTGGAAATCCGTTGA
Coding sequence (CDS)
ATGCCAGGGAACCGAAGCCGAGGAGAAGAGGTTGACGCCAAAGTTACTGCCCTAGAGGATAAGGTTAGGGCAGTCGAGGCCGAGGCTAGAGTGGCCGAGGCCGAGGCCAAGAGGGACAATCTCCCTTGGAAGACCGAGCTTCTAAACACCCTAAAGGAGCTCGGAAGTTCCCAAGGGGACCTGCAGAAATCAAAGGATTCTGGAGAACAAAACTTAGAAGAACTAATCGACCAGGTTGACCCATCCTTCACTGATGAAGTCATGAAAGCCGAGGTGTCCCAGAAGTTCAAGGTACCTACATTTAAACCGTATGATGGCAAGAAGGACCCCGTACAACACCTAGACGCCTACAGAAACTGGATGGACTTCCATGACGTTTCAGATGCAATCAGGTGTCAGGACAGACGAGGTTGGTCGCGTCCGAGCCGACCAGACCGAAGAGACTACACAAGAAAGTTTGAAAAGTACACCCTTACCTCACTCCCACAGGAGAAAATCTTAATGGAAATTCGGAATACGAACCTCTTTAATGTACCAAGAAAGCTGAAGTCAAATCTTGACAAAAGAGACAAAGGTCAGTATTGTCTCTTCCATCGAGATCATGGGCATTCAACTAGGAACTGCAATCAACTGAAGGACGAAATTGAAGCACTAATTCGGAACAGGTACCTGAAGAAGTTCACCACTAAGGCCAAGGCGGTCAGAAATGGTCAAGGCAAAGATGATGATAGACCCCTTCTGGAAATCCGTTGA
Protein sequence
MPGNRSRGEEVDAKVTALEDKVRAVEAEARVAEAEAKRDNLPWKTELLNTLKELGSSQGDLQKSKDSGEQNLEELIDQVDPSFTDEVMKAEVSQKFKVPTFKPYDGKKDPVQHLDAYRNWMDFHDVSDAIRCQDRRGWSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNGQGKDDDRPLLEIR
Homology
BLAST of Spg025524 vs. NCBI nr
Match:
XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])
HSP 1 Score: 136.7 bits (343), Expect = 2.7e-28
Identity = 94/326 (28.83%), Postives = 130/326 (39.88%), Query Frame = 0
Query: 71 NLEELIDQVDPSFTDEVMKAEVSQKFKVPTFKPYDGKKDPVQHLDAYRNWMDFHDVSDAI 130
+LEEL+DQ D FT+E+M+ +V KFK+PT K +D DPV HLDAYR WMD + VS+A+
Sbjct: 168 DLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAV 227
Query: 131 RC----------------QDRRG------------------------------------- 190
RC Q +RG
Sbjct: 228 RCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTT 287
Query: 191 ------------------------------------------------------------ 250
Sbjct: 288 ESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRY 347
BLAST of Spg025524 vs. NCBI nr
Match:
XP_022142767.1 (uncharacterized protein LOC111012805 [Momordica charantia])
HSP 1 Score: 110.2 bits (274), Expect = 2.7e-20
Identity = 52/113 (46.02%), Postives = 76/113 (67.26%), Query Frame = 0
Query: 138 WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLF 197
W + R ++D +KFEKYT T++P E++LMEI+N L P ++ ++ KR KG+YCLF
Sbjct: 206 WEKRDRSCQKDPPQKFEKYTSTTVPLEQVLMEIKNQRLLKWPERMNASSTKRSKGRYCLF 265
Query: 198 HRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNGQGKDDDRPLLEIR 251
H DHGH+T++C LK+E+E LI YLK++ + KA +NG+ D P EIR
Sbjct: 266 HWDHGHATQDCFDLKEEVEGLILRGYLKEYVEEPKATQNGE--SDKSPAREIR 316
BLAST of Spg025524 vs. NCBI nr
Match:
XP_022159368.1 (uncharacterized protein LOC111025785 [Momordica charantia])
HSP 1 Score: 106.3 bits (264), Expect = 3.9e-19
Identity = 51/113 (45.13%), Postives = 75/113 (66.37%), Query Frame = 0
Query: 138 WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLF 197
W + R ++D RKFEKYT T++P E++LMEI++ L P ++K KR KG+YCLF
Sbjct: 165 WEKRDRSSQKDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKVPSTKRSKGRYCLF 224
Query: 198 HRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNGQGKDDDRPLLEIR 251
HRDH H+T++ LK+E+E LIR YL+++ + KA +NG+ + P EIR
Sbjct: 225 HRDHNHATQDYFDLKEEVEGLIRRGYLQEYVEEPKATQNGE--SEKSPAREIR 275
BLAST of Spg025524 vs. NCBI nr
Match:
XP_022159192.1 (uncharacterized protein LOC111025612 [Momordica charantia])
HSP 1 Score: 106.3 bits (264), Expect = 3.9e-19
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 0
Query: 138 WSRPSR-PDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCL 197
W + R ++D RKFEKYT T++P E++LMEI++ L P +K+ +KR KG+YCL
Sbjct: 65 WEKQDRVVGQKDLPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPETMKAPPNKRSKGRYCL 124
Query: 198 FHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNGQGKDDDRPLLEIR 251
FHRDHGH+T +C LK+E+E LIR YLK++ KA N + D+ P EIR
Sbjct: 125 FHRDHGHATLDCFDLKEEVEGLIRKGYLKEYVDDLKATPNRE-NDNKSPTREIR 177
BLAST of Spg025524 vs. NCBI nr
Match:
GFS37364.1 (hypothetical protein Acr_00g0051530 [Actinidia rufa])
HSP 1 Score: 99.4 bits (246), Expect = 4.8e-17
Identity = 83/293 (28.33%), Postives = 132/293 (45.05%), Query Frame = 0
Query: 2 PGNRSRGEEVDAKVTALEDKVRAVEAEARVAEAEAKRDNLPWKTELLNTLKELGSSQGDL 61
P R R ++ T + V AEA + E K + +++L ++ D
Sbjct: 62 PSIRERSSSSESSQTRSRVRRGEVPAEAIIPRRETKSTS--------QRIRDL-DARLDA 121
Query: 62 QKSKDSGEQNLEELIDQVDPSFTDEVMKAEVSQKFKVPT-FKPYDGKKDPVQHLDAYRNW 121
+ + ++ L+ Q DP FT V+ A +S KFK+PT Y+GK DP+ HLD+Y +
Sbjct: 122 INTGTNAPVTVDTLVRQTDPLFTKRVLVARISSKFKLPTQLGIYEGKTDPMDHLDSYNSL 181
Query: 122 MDFHDVSDAIRCQ------------------------------------DRRGWSRPSRP 181
M SD + C+ D R +R RP
Sbjct: 182 MSLQGCSDEVMCKAFSATLKGPARGVSRGQTKRREKDDHKRKEPDTGRNDYREETRYKRP 241
Query: 182 DR---RDYTR------KFEKYTLTSL--PQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQ 241
DR R R + ++TL L P ++L EI++ P K+K++ KR++ +
Sbjct: 242 DRDTKRSNNRRPRTPPRRPEFTLPPLNAPVAQVLSEIKHEEFVKWPGKIKTDPQKRNRNK 301
Query: 242 YCLFHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNGQGK-DDDRP 246
YC FHRDHGH+T +C QLK++I LI+ YL+K+ + + + D+RP
Sbjct: 302 YCEFHRDHGHNTEDCFQLKEQIADLIKRGYLRKYVAARPPPNSPERRYGDNRP 345
BLAST of Spg025524 vs. ExPASy TrEMBL
Match:
A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 1.3e-28
Identity = 94/326 (28.83%), Postives = 130/326 (39.88%), Query Frame = 0
Query: 71 NLEELIDQVDPSFTDEVMKAEVSQKFKVPTFKPYDGKKDPVQHLDAYRNWMDFHDVSDAI 130
+LEEL+DQ D FT+E+M+ +V KFK+PT K +D DPV HLDAYR WMD + VS+A+
Sbjct: 168 DLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAV 227
Query: 131 RC----------------QDRRG------------------------------------- 190
RC Q +RG
Sbjct: 228 RCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTT 287
Query: 191 ------------------------------------------------------------ 250
Sbjct: 288 ESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRY 347
BLAST of Spg025524 vs. ExPASy TrEMBL
Match:
A0A6J1CNT2 (uncharacterized protein LOC111012805 OS=Momordica charantia OX=3673 GN=LOC111012805 PE=4 SV=1)
HSP 1 Score: 110.2 bits (274), Expect = 1.3e-20
Identity = 52/113 (46.02%), Postives = 76/113 (67.26%), Query Frame = 0
Query: 138 WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLF 197
W + R ++D +KFEKYT T++P E++LMEI+N L P ++ ++ KR KG+YCLF
Sbjct: 206 WEKRDRSCQKDPPQKFEKYTSTTVPLEQVLMEIKNQRLLKWPERMNASSTKRSKGRYCLF 265
Query: 198 HRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNGQGKDDDRPLLEIR 251
H DHGH+T++C LK+E+E LI YLK++ + KA +NG+ D P EIR
Sbjct: 266 HWDHGHATQDCFDLKEEVEGLILRGYLKEYVEEPKATQNGE--SDKSPAREIR 316
BLAST of Spg025524 vs. ExPASy TrEMBL
Match:
A0A6J1DZ52 (uncharacterized protein LOC111025612 OS=Momordica charantia OX=3673 GN=LOC111025612 PE=4 SV=1)
HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 0
Query: 138 WSRPSR-PDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCL 197
W + R ++D RKFEKYT T++P E++LMEI++ L P +K+ +KR KG+YCL
Sbjct: 65 WEKQDRVVGQKDLPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPETMKAPPNKRSKGRYCL 124
Query: 198 FHRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNGQGKDDDRPLLEIR 251
FHRDHGH+T +C LK+E+E LIR YLK++ KA N + D+ P EIR
Sbjct: 125 FHRDHGHATLDCFDLKEEVEGLIRKGYLKEYVDDLKATPNRE-NDNKSPTREIR 177
BLAST of Spg025524 vs. ExPASy TrEMBL
Match:
A0A6J1DYL6 (uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025785 PE=4 SV=1)
HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 51/113 (45.13%), Postives = 75/113 (66.37%), Query Frame = 0
Query: 138 WSRPSRPDRRDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSNLDKRDKGQYCLF 197
W + R ++D RKFEKYT T++P E++LMEI++ L P ++K KR KG+YCLF
Sbjct: 165 WEKRDRSSQKDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKVPSTKRSKGRYCLF 224
Query: 198 HRDHGHSTRNCNQLKDEIEALIRNRYLKKFTTKAKAVRNGQGKDDDRPLLEIR 251
HRDH H+T++ LK+E+E LIR YL+++ + KA +NG+ + P EIR
Sbjct: 225 HRDHNHATQDYFDLKEEVEGLIRRGYLQEYVEEPKATQNGE--SEKSPAREIR 275
BLAST of Spg025524 vs. ExPASy TrEMBL
Match:
A0A2N9J520 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60449 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 3.2e-19
Identity = 74/294 (25.17%), Postives = 131/294 (44.56%), Query Frame = 0
Query: 4 NRSRGEEVDAKVTALEDKVRAVEAEARVAEAEAKRDN---------LPWKTELLNTLKEL 63
N+ RG + +++ +++ + + + + E E + +N W+ E+ ++
Sbjct: 163 NKERG-DAESRQERQQEQQQEQQEQRQEQEGETRGENTRITVEQPSAKWEEEIKAMRAQM 222
Query: 64 GSSQGDLQKSKDSGEQNLEELIDQVDPSFTDEVMKAEVSQKFKVPTFKPYDGKKDPVQHL 123
G + + K +N+++L+ D FT++V+ + KF++P+ + +DG KDP+ HL
Sbjct: 223 GEMKDEF---KGRATKNIDDLVQGTDSPFTEKVISFPLPSKFRMPSLEIFDGSKDPLDHL 282
Query: 124 DAYRNWMDFHDVSDAIRCQ--------DRRGW-----------------------SRPSR 183
++++ M V D I C+ R W RP+
Sbjct: 283 ESFKTVMCLQGVPDEIMCRAFPTTLKGPARIWFKKLMPGSLVIRPTGKKRKGEHADRPAE 342
Query: 184 PDR------------------RDYTRKFEKYTLTSLPQEKILMEIRNTNLFNVPRKLKSN 240
P R + +F ++T + P + I M+IRN P KL ++
Sbjct: 343 PQETRPKAQRNRNGRQEERSGRGFNERFNRFTPLNAPVDHIFMQIRNDPALKWPGKLLTD 402
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022158830.1 | 2.7e-28 | 28.83 | uncharacterized protein LOC111025293 [Momordica charantia] | [more] |
XP_022142767.1 | 2.7e-20 | 46.02 | uncharacterized protein LOC111012805 [Momordica charantia] | [more] |
XP_022159368.1 | 3.9e-19 | 45.13 | uncharacterized protein LOC111025785 [Momordica charantia] | [more] |
XP_022159192.1 | 3.9e-19 | 47.37 | uncharacterized protein LOC111025612 [Momordica charantia] | [more] |
GFS37364.1 | 4.8e-17 | 28.33 | hypothetical protein Acr_00g0051530 [Actinidia rufa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DWY0 | 1.3e-28 | 28.83 | uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A6J1CNT2 | 1.3e-20 | 46.02 | uncharacterized protein LOC111012805 OS=Momordica charantia OX=3673 GN=LOC111012... | [more] |
A0A6J1DZ52 | 1.9e-19 | 47.37 | uncharacterized protein LOC111025612 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A6J1DYL6 | 1.9e-19 | 45.13 | uncharacterized protein LOC111025785 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A2N9J520 | 3.2e-19 | 25.17 | Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60449 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |